Molecular expression of opsin gene in growing juvenile mackerel (<Emphasis Type="Italic">Scomber japonicus</Emphasis> Houttuyn)

Fish have developed color vision that is closely adapted to their photic environments, where both spectral sensitivity and the number of visual opsins are influenced. The mackerel used in this study is one of the most important fishery stocks in Korea. The opsin gene of the mackerel juveniles after 20 days in hatching was isolated and characterized based on the molecular study of visual photoreceptor. The full-length mackerel opsin gene was obtained by PCR amplification of genomic DNA, as well as cDNA synthesis. Sequence analysis of the opsin gene showed that it contained a 1,080 bp open reading frame encoding 360 amino acids. Based on Schiff’s base formation (S114, K119), glycosylation (E3, F37) and palmitoylation (S281, 282), the deduced amino acid sequence had a typical rod opsin. The mackerel and Gempylus serpens showed 73.7% DNA homology on opsin gene, which was higher than any other of investigated species. In the analysis of phylogenetic relationship, the genetic placement of the mackerel is closer to that of Scombroidei than Labroidei, with supporting somewhat strong bootstrap value. In the analysis of Northern and RT-PCR, the probed products were observed only in rapidly growing juveniles. These findings indicate that in mackerel opsin mRNA expression can be detected in day-20 hatching larvae. It may play an important role in stimulating growth hormone.     

Rare earth elements in bottom sediments of major rivers around the Yellow Sea: implications for sediment provenance

Rare earth elements (REEs) of 91 fine-grained bottom sediment samples from five major rivers in Korea (the Han, Keum, and Yeongsan) and China (the Changjiang and Huanghe) were studied to investigate their potential as source indicator for Yellow Sea shelf sediments, this being the first synthetic report on REE trends for bottom sediments of these rivers. The results show distinct differences in REE contents and their upper continental crust (UCC)-normalized patterns: compared to heavy rare earth elements (HREEs), light rare earth elements (LREEs) are highly enriched in Korean river sediments, in contrast to Chinese river sediments that have a characteristic positive Eu anomaly. This phenomenon is observed also in primary source rocks within the river catchments. This suggests that source rock composition is the primary control on the REE signatures of these river sediments, due largely to variations in the levels of chlorite and monazite, which are more abundant in Korean bottom river sediments. Systematic variations in ΣLREE/ΣHREE ratios, and in (La/Yb)–(Gd/Yb)_UCC but also (La/Lu)–(La/Y)_UCC and (La/Y)–(Gd/Lu)_UCC relations have the greatest discriminatory power. These findings are consistent with, but considerably expand on the limited datasets available to date for suspended sediments. Evidently, the REE fingerprints of these river sediments can serve as a useful diagnostic tool for tracing the provenance of sediments in the Yellow Sea, and for reconstructing their dispersal patterns and the circulation system of the modern shelf, as well as the paleoenvironmental record of this and adjoining marginal seas.     

Variations in turbulent energy dissipation and water column stratification at the entrance of a tidally energetic strait

We observed tidal currents, turbulent energy dissipation and water column stratification at the entrance of a narrow strait (Neko Seto) in the Seto Inland Sea, Japan, using a free-falling turbulent microstructure profiler (TurboMAP) and acoustic Doppler current profiler (ADCP). The variation in turbulent energy dissipation at the entrance of the strait was not at quarter-diurnal frequency but at semi-diurnal frequency; turbulent energy dissipation was enhanced during the ebb tide, although it was moderate during the flood tide. This result is consistent with the results of Takasugi (1993), which showed the asymmetry of tidal energy loss during a semidiurnal tidal cycle using control volume analysis. It is suggested that significant turbulent energy dissipation is generated in the strait, which influences the properties of water outside the strait when tidal currents flow out from the strait.     

Vertical double silicate maxima in the sea-ice reduction region of the western Arctic Ocean: Implications for an enhanced biological pump due to sea-ice reduction

The R/V Mirai conducted hydrographic surveys in the western Arctic Ocean during summer 2004 (Mirai04) over wide east-west ranges from Alaska to eastern Siberia, where sea-ice cover has been greatly reduced in recent summers. The obtained data reveal differences in silicate profiles between shelf slope areas east and west of the Chukchi Plateau, the ridge that divides the Canada Basin into the Alaskan and east Siberian sides. East of the plateau, a single silicate maximum was found in a layer of Pacific-origin winter water, as examined in many previous studies. In contrast, west of the plateau, we found vertical double silicate maxima, which are reported for the first time in this study. The shallower silicate maximum corresponded to an N** minimum, signaling denitrification at the shelf bottom. This suggests that the shallower silicate maximum was caused by the spreading of shelf water. In contrast, the deeper silicate maximum corresponded to an oxygen minimum and a maximum silicate/phosphate ratio (Si/P), suggesting that this deeper maximum resulted from the decomposition of opal-shelled organisms. We also compared a silicate profile from Mirai04 to aprofile from the Arctic Ocean Section 94 (AOS94) expedition of 1994, a heavy ice year. The results suggest that sea-ice loss has enhanced biological activities, likely resulting in the appearance of the deeper silicate maximum.     

Large-scale laboratory experiment on erosion of sand beds by moving circular vertical jets

This study investigates the topographic deformation due to the erosion of a sand bed impinged by a moving submerged turbulent round jet in a large-scale laboratory. The test conditions represent the case of discharges beneath a vessel while operating in water with a limited clearance such as a shallow navigation channel. The jet moves horizontally and discharges water vertically downward towards the bed. The distance between the jet nozzle and the bed equals six times the jet diameter so the jet flow is in the potential core region. The speed of the jet horizontal motion was varied to examine its effect on the scour profile. The characteristic lengths of the scour profile in the asymptotic state were determined by modifying the empirical formulas in Aderibigbe and Rajaratnam [1996. Erosion of loose beds by submerged circular impinging vertical turbulent jets. Journal of Hydraulic Research 34(1), 19–33]. The maximum scour depth, the scour hole radius, and the ridge height were found to be a function of the ratio of the jet exit to jet translation velocities and were modeled using a hyperbolic function. Empirical equations describing the scour profile were developed and the scour profile was found to be self-similar when normalized by appropriate length scales.     

Influence of Environmental Factors on Spawning of the American Horseshoe Crab (<Emphasis Type="Italic">Limulus polyphemus</Emphasis>) in the Great Bay Estuary,New Hampshire,USA

The Great Bay Estuary, New Hampshire, USA is near the northern distribution limit of the American horseshoe crab (Limulus polyphemus). This estuary has few ideal beaches for spawning, yet it supports a modest population of horseshoe crabs. There is no organized monitoring program in the Great Bay Estuary, so it is unclear when and where spawning occurs. In this 2-year study (May through June, 2012 and 2013), >5,000 adult horseshoe crabs were counted at four sites in the estuary. The greatest densities of horseshoe crabs were observed at Great Bay sites in the upper, warmer reaches of the estuary. Peaks of spawning activity were not strongly correlated with the times of the new or full moons, and similar numbers of horseshoe crabs were observed mating during daytime and nighttime high tides. While many environmental factors are likely to influence the temporal and spatial patterns of spawning in this estuary, temperature appears to have the most profound impact.     

Extended Finite Element Method for the Analysis of Discontinuities in Rock Masses

The strength and deformability of rock mass primarily depend on the condition of joints and their spacing and partially on the engineering properties of rock matrix. Till today, numerical analysis of discontinuities e.g. joint, fault, shear plane and others is conducted placing an interface element in between two adjacent rock matrix elements. However, the applicability of interface elements is limited in rock mechanics problems having multiple discontinuities due to its inherent numerical difficulties often leading to non-convergent solution. Recent developments in extended finite element method (XFEM) having strong discontinuity imbedded within a regular element provide an opportunity to analyze discrete discontinuities in rock masses without any numerical difficulties. This concept is based on partition of unity principle and can be used for cohesive rock joints. This paper summarizes the mathematical frameworks for the implementation of strong discontinuities in 3 and 6 nodded triangular elements and also provides numerical examples of the application of XFEM in one and two dimensional problems with single and multiple discontinuities.     

Structural changes in macrozoobenthic communities due to summer hypoxia in Gamak Bay,Korea

The purpose of this study was to examine the structural changes that macrozoobenthic communities underwent as a result of the annual summer hypoxia at the northern part of Gamak Bay, Korea. During this study period, summer hypoxia occurred at the northern part of Gamak Bay in July. Under hypoxic conditions, both the number of species and population density decreased rapidly. Species diversity also manifested lower values during this hypoxic period. Faunal composition changed seasonally with Capitella capitata dominant at the hypoxic sites in spring but disappearing in summer. The health condition of the benthic faunal community assessed by the composition of functional groups within community also changed due to the summer hypoxia from a slightly polluted condition to a highly polluted condition. From these results it has been shown that the recent macrozoobenthic community structure in Gamak Bay has returned to a state similar to what it was before dredging works commenced.