Photochemical models of the atmosphere and their application in ozonosphere and climate studies: A review

This review is devoted to problems in the photochemical modeling of atmospheric processes. The physicochemical and mathematical foundations underlying the construction of photochemical models are described, a classification of the atmospheric reactions is presented, and the features of photochemical modeling are considered under various irradiance conditions for various atmospheric layers and geographical regions. Atmospheric processes that are important to photochemical models are discussed. Applications involving photochemical models are outlined. Some results are presented to illustrate the capabilities of photochemical models. Special attention is given to relatively recent directions in photochemical modeling, such as data assimilation and inverse problems. The review can be used by experts in areas related to atmospheric chemistry as a basic source of knowledge on the subject and for the development of photochemical modules for atmospheric models.     

Seasonal evolution of the transverse thermohaline asymmetry in the Ria de Pontevedra (northwestern Spain)

A quasi-permanent transverse asymmetry in the thermohaline properties of the Ria de Pontevedra (northwestern Spain) was measured from October 1997 to October 1998 during 23 cruises. On average, the density increased form north to south. This asymmetry was maintained by salinity during the wet season, and by salinity and temperature during the dry season. The density difference between coasts (Δσ_t = σ_tsouth − σ_tnorth) and the river discharge were positively correlated (correlation coefficient, approximately 0.6) throughout the year. The density difference was negatively correlated with the upwelling index during the wet season (correlation coefficient, approximately −0.45) and positively correlated during the dry season (correlation coefficient, approximately 0.55).     

Imaging of Buried Archaeological Materials: The Reflection Properties of Archaeological Wood

Effective marine archaeological site management demands detailed information on not only the spatial distribution of artefacts but also the degradation state of the materials present. Although sonar methods have frequently been used in an attempt to detect buried wooden shipwrecks they are currently unable to indicate their degradation state. To assess the sensitivity of acoustic measurements to changes in the degradation state of such material, and hence the potential for sonars to quantify degradation, laboratory measurements of compressional wave velocity, as well as bulk density for oak and pine samples, in varying states of decay, were undertaken. These data enabled the calculation of theoretical reflection coefficients for such materials buried in various marine sediments. As wood degrades, the reflection coefficients become more negative, resulting in the hypothesis that the more degraded wood becomes, the easier it should be to detect. Typical reflection coefficients of the order of −0.43 and −0.52 for the most degraded oak and pine samples in sand are predicted. Conversely, for wood exposed to seawater the predicted reflection coefficients are large and positive for undegraded material (0.35 for oak, 0.18 for pine) and decrease to zero or slightly below for the most degraded samples. This indicates that exposed timbers, when heavily degraded, can be acoustically transparent and so undetectable by acoustic methods. Corroboration of these experimental results was provided through comparison with high resolution seismic reflection data that has been acquired over two shipwrecks.     

Management of a shallow temperate estuary to control eutrophication: The effect of hydrodynamics on the system’s nutrient loading

The Mondego estuary, a shallow warm-temperate intertidal system located on the west coast of Portugal, has for some decades been under severe ecological stress, mainly caused by eutrophication. Water circulation in this system was, until 1998, mainly dependent on tides and on the freshwater input of a small tributary artificially controlled by a sluice. After 1998, the sluice opening was effectively minimised to reduce the nutrient loading, and the system hydrodynamics improved due to engineering work in the upstream areas. The objective of the present study was to evaluate the effect of the mitigation measures implemented in 1998. Changes to the hydrodynamics of the system were assessed using precipitation and salinity data in relation to the concentrations of dissolved inorganic nutrients, as well as the linkage between dissolved N:P ratios and the biological parameters (phytoplankton chlorophyll a concentrations, green macroalgal biomass and seagrass biomass). Two distinctive periods were compared, over a ten year period: from January 1993 to January 1997 and from January 1999 until January 2003. The effective reduction in the dissolved N:P atomic ratio from 37.7 to 13.2 after 1998 is a result of lowered ammonia, but not the oxidised forms of nitrogen (nitrate plus nitrite), or increased concentrations of dissolved inorganic phosphorus. Results suggest that the phytoplankton is not nutrient limited, yet maximum and mean biomass of green macroalgae was reduced by one order of magnitude after the mitigation measures. This suggests that besides lowering the water residence time of the system, macroalgal growth became nitrogen limited. In parallel to these changes the seagrass-covered area and biomass of Zostera noltii showed signs of recovery.     

Glucuronidation in the polar bear (Ursus maritimus)

Polar bears bioaccumulate lipophilic pollutants, including polychlorinated biphenyls (PCBs), into their bodies from their exclusive diet of marine organisms. Hydroxylated PCB metabolites (OH-PCBs) have been found in plasma, presumably due to CYP-dependent biotransformation of PCBs in liver. Little is known about the phase 2 metabolism of hydroxylated xenobiotics in polar bears. The objective of this study was to examine UDP-glucuronosyltransferase (UGT) activity with OH-PCBs and a hydroxylated polycyclic aromatic hydrocarbon, 3-hydroxy-benzo(a)pyrene (3-OH-BaP), in polar bear liver. Samples of frozen polar bear liver were used to prepare microsomes. UGT activity with 3-OH-BaP in Brij-treated microsomes, measured by a fluorescence assay, was readily measurable with protein concentrations in assay tubes of up to 10 g/ml, but dropped off very sharply at higher protein concentrations. The apparent Km for 3-OH-BaP was 1.71 +/- 0.04 microM, and Vmax 1.26 +/- 0.16 nmol/min/mg protein (mean +/- SD, n=3). UGT activities with a model tetrachloro-OH-PCB (4'-OH-CB72) and a model hexachloro-OH-PCB (4'-OH-CB159) were assayed with [14-C]-UDPGA and separation of the [14-C]-glucuronide by ion-pair extraction and thin-layer chromatography. [14-C]-glucuronide conjugates were readily formed by polar bear liver microsomes in the absence of added substrate, apparently from contaminants present in liver. This phenomenon was not observed using hepatic microsomes from laboratory-held catfish. Glucuronidation efficiency was much higher with 4'-OH-CB72 (Km 7.3 microM; Vmax 1.55 nmol/min/mg) than 4'-OH-CB159 (Km 16.1 microM; Vmax 0.46 nmol/min/mg). The identities of the aglycones present in polar bear liver are not known, but could include OH-PCBs or hydroxylated metabolites of other persistent organic pollutants. This study demonstrates that UGT with high activity for 3-OH-BaP and other substrates is present in polar bear liver.     

Functional responses for zooplankton feeding on multiple resources: a review of assumptions and biological dynamics

Modelers often need to quantify the rates at which zooplankton consume a variety of species, size classes and trophic types. Implicit in the equations used to describe the multiple resource functional response (i.e. how nutritional intake varies with resource densities) are assumptions that are not often stated, let alone tested. This is problematic because models are sensitive to the details of these formulations. Here, we enable modelers to make more informed decisions by providing them with a new framework for considering zooplankton feeding on multiple resources. We define a new classification of multiple resource responses that is based on preference, selection and switching, and we develop a set of mathematical diagnostics that elucidate model assumptions. We use these tools to evaluate the assumptions and biological dynamics inherent in published multiple resource responses. These models are shown to simulate different resource preferences, implied single resource responses, changes in intake with changing resource densities, nutritional benefits of generalism, and nutritional costs of selection. Certain formulations are further shown to exhibit anomalous dynamics such as negative switching and sub-optimal feeding. Such varied responses can have vastly different ecological consequences for both zooplankton and their resources; inappropriate choices may incorrectly quantify biologically-mediated fluxes and predict spurious dynamics. We discuss how our classes and diagnostics can help constrain parameters, interpret behaviors, and identify limitations to a formulation's applicability for both regional (e.g. High-Nitrate-Low-Chlorophyll regions comprising large areas of the Pacific) and large-scale applications (e.g. global biogeochemical or climate change models). Strategies for assessing uncertainty and for using the mathematics to guide future experimental investigations are also discussed.     

Retention and fate of experimentally added mercury in a Massachusetts salt marsh treated with sewage sludge

A simple, rapid, precise and reproducible procedure is described for sample preparation, extraction and measurement of total mercury in peaty sediments, plants and animal tissues. Various amounts of a heavy metal containing dried sewage sludge were applied to experimental plots in a New England salt marsh. This treatment resulted in elevation of mercury levels in the surface 5 cm of the soil. Discrepancies in the bulk density of marsh sediments corresponded with interparticle spaces and detritus/mineral ratios in the peat matrix. Mass balance calculations showed that wetlands covered with tall Spartina alterniflora lost mercury considerable faster than higher marsh locations which retained virtually all mercury added. The shortest halflife of mercury calculated was four years. Grain size analyses of peat and sewage sludge suggested that mercury in the higher intertidal range remained associated with sludge components. Biochemical and physical processes affecting the dissipation of mercury from creek side sediments are discussed.     

Bottom foraminiferal assemblages in the Deryugin Basin (Sea of Okhotsk) during the past 26000 years

Benthic foraminifers from a core of bottom sediments obtained in the Deryugin Basin at a depth of 1750 m were examined. Three distinct benthic foraminiferal assemblages that replaced one another throughout the last 26000 years were recognized. The assemblage dominated by Alabaminella weddellensis, Uvigerina auberiana, and Cassidulina translucens dwelled here from 26 to 24 ky B.P. The sediments of the glacial period between 26 and 12.18 ky B.P. contain no benthic foraminifers. The composition of the sediments suggests the existence of active bottom vents of gas-bearing fluids during that time. The dominance of Brizalina spissa, Uvigerina peregrina, and Cassidulina laevigata is characteristic of the period from 12.18 to 7 ky B.P., when the productivity of the surface waters in the region was high, and warm, poorly oxygenated waters spread over the bottom of the basin. During the past 7 000 years, the bottom conditions in the sea were similar to the present-day conditions and an assemblage with the dominance of Gyroidina orbicularis, Uvigerina auberiana, and Cassidulina teretis developed in the region.     

Influence of Current Width Variation on the Annual Mean Transport of the East Sakhalin Current: A Simple Model

Recent observations suggest that the annual mean southward transport of the East Sakhalin Current (ESC) is significantly larger than the annual mean Sverdrup transport. Motivated by this observational result, transport of a western boundary current has been investigated using a simple numerical model with a western slope. This transport is defined as the instantaneous barotropic transport integrated from the western boundary to the offshore point where the barotropic velocity vanishes. The model, forced by seasonally varying wind stress, exhibits an annual mean of the western boundary current transport that is larger than that of the Sverdrup transport, as observed. The southward transport from October to March in the model nearly equals the instantaneous Sverdrup transport, while the southward transport from April to September decreases slowly. Although the Sverdrup transport in July vanishes, the southward transport in summer nearly maintains the annual mean Sverdrup transport, because the barotropic Rossby wave cannot intrude on the western slope. This summer transport causes the larger annual mean. Although there are some uncertainties in the estimation of the Sverdrup transport in the Sea of Okhotsk, the seasonal variation of the southward transport in the model is qualitatively similar to the observations.