Early diagenesis in sediments from the eastern equatorial Pacific,I. Pore water nutrient and carbonate results

Interstitial waters were extracted from cores at three locations in the eastern equatorial Pacific and analyzed for nutrients, dissolved carbonate species, Mn and Fe. From the depth variation in pore water chemistry, we infer that organic matter oxidation reactions occur with depth in the following sequence: O₂ reduction, NO₃^? and MnO₂ reduction, and then ferric iron reduction. From NO₃^? results we infer that O₂ is largely or totally consumed within the top few centimeters of sediment. NO₃^? is completely reduced at a sediment depth of 20 cm at a site near the crest of the East Pacific Rise, but is preserved at levels of 20–30 μmol/kg at 40 cm depth at a Guatemala Basin site.We have calculated the alkalinity for pore water samples assuming ions diffuse according to relative ionic diffusion coefficients, that the stoichiometry of organic matter oxidation reactions is that of “Redfield” organic matter, and that the pore waters are saturated throughout with respect to CaCO₃. The measured alkalinity increase is only about half of the predicted value. The difference is probably a result of either enhanced mixing of the pore water in the top few centimeters of sediments by biological or physical processes, or the occurrence of an inorganic reaction which consumes alkalinity.At depths of oxygen and nitrate reduction in the sediments, the ion concentration product of CaCO₃ is the same, within the analytical error, as the solubility product of Ingle et al. [34] at 1 atm and 4°C. This result indicates CaCO₃ resaturation on pressure change during coring. Where pore water Mn concentrations become measurable, the ion concentration product increases, indicating either supersaturation with respect to calcite or that another phase is controlling the carbonate solubility.     

Numerical Simulation of Fault Zone Guided Waves: Accuracy and 3-D Effects

-- Fault zones are thought to consist of regions with reduced seismic velocity. When sources are located in or close to these low-velocity zones, guided seismic head and trapped waves are generated which may be indicative of the structure of fault zones at depth. Observations above several fault zones suggest that they are common features of near fault radiation, yet their interpretation may be highly ambiguous. Analytical methods have been developed to calculate synthetic seismograms for sources in fault zones as well as at the material discontinuities. These solutions can be used for accurate modeling of wave propagation in plane-parallel layered fault zone structures. However, at present it is not clear how modest deviations from such simplified geometries affect the generation efficiency and observations of trapped wave motion. As more complicated models cannot be solved by analytical means, numerical methods must be employed. In this paper we discuss 3-D finite-difference calculations of waves in modestly irregular fault zone structures. We investigate the accuracy of the numerical solutions for sources at material interfaces and discuss some dominant effects of 3-D structures. We also show that simple mathematical operations on 2-D solutions generated with line sources allow accurate modeling of 3-D wave propagation produced by point sources. The discussed simulations indicate that structural discontinuities of the fault zone (e.g., fault offsets) larger than the fault zone width affect significantly the trapping efficiency, while vertical properly gradients, fault zone narrowing with depth, small-scale structures, and moderate geometrical variations do not. The results also show that sources located with appropriate orientations outside and below a shallow fault zone layer can produce considerable guided wave energy in the overlying fault zone layer.     

Hydraulic fracturing in unconventional gas reservoirs: risks in the geological system, part 2

Hydraulic fracturing is a method used for the production of unconventional gas resources. Huge amounts of so-called fracturing fluid (10,000–20,000 m³) are injected into a gas reservoir to create fractures in solid rock formations, upon which mobilised methane fills the pore space and the fracturing fluid is withdrawn. Hydraulic fracturing may pose a threat to groundwater resources if fracturing fluid or brine can migrate through fault zones into shallow aquifers. Diffuse methane emissions from the gas reservoir may not only contaminate shallow groundwater aquifers, but also escape into the atmosphere where methane acts as a greenhouse gas. The working group “Risks in the Geological System” as part of ExxonMobil’s hydrofracking dialogue and information dissemination processes was tasked with the assessment of possible hazards posed by migrating fluids as a result of hydraulic fracturing activities. In this work, several flow paths for fracturing fluid, brine and methane are identified and scenarios are set up to qualitatively estimate under what circumstances these fluids would leak into shallower layers. The parametrisation for potential hydraulic fracturing sites in North Rhine-Westphalia and Lower Saxony (both in Germany) is derived from literature using upper and lower bounds of hydraulic parameters. The results show that a significant fluid migration is only possible if a combination of several conservative assumptions is met by a scenario.     

Early diagenesis of organic matter in Peru continental margin sediments: Phosphorite precipitation

Pore water chemistry (total dissolved CO₂, NH₄, NO₃, NO₂, PO₄, Si(OH)₄, Ca, Mg, Fe, Mn, SO₄, H₂S and F, and titration alkalinity), solid phase chemistry (C_org, P_org, C_TOT, N_TOT, F, Si_OPAL and S_II), and sediment characteristics (porosity, dry bulk density and formation factors) were determined on a centimeter-scale spacing in the upper 20–40 cm of sediments under intense upwelling areas on the Peru continental shelf. These data demonstrate that carbonate fluorapatite (CFA) is precipitating from pore waters in the upper few centimeters of a gelatinous mud with high organic carbon content (up to 20% C_org), very high porosity ( > 0.96 ml cm⁻³) and very low dry bulk density (< 0.1 g cm⁻³). Dissolved phosphate concentrations at the sediment-water interface range from 20 to 100 μM, orders of magnitude higher than bottom-water concentrations, and much higher than predicted from regeneration of organic matter. The mechanism of this interfacial phosphate release is unclear, but is apparently uncoupled from carbon and nitrogen metabolism and thus may be linked either to dissolution of fish debris or to the presence of a microbial mat in surficial sediments. Fluoride is incorporated into CFA by diffusion from the overlying seawater, and carbonate ions are provided from pore-water alkalinity. Magnesium concentrations in this reaction zone are not significantly different from those of seawater, suggesting that magnesium depletion is not a necessary prerequisite for CFA precipitation.

The environment of precipitation is interface-linked rather than driven by organic diagenesis of phosphorus deeper in the sediment. Most of the cores display a wide range of diagenetic characteristics below the immediate interfacial region, but almost all show the precipitation signature near the interface. This interface-linked early diagenetic porewater environment for the precipitation of CFA explains many of the geochemical characteristics of phosphorites and provides a “testable” model to compare the modern phosphogenic analog with ancient phosphorite deposits. Two of the cores display very high solid phase phosphorus and fluoride contents reflecting the presence of apparently modern pelletal apatites.     

Submarine groundwater discharge of nutrients to the ocean along a coastal lagoon barrier, Southern Brazil

The Patos–Mirim Lagoon system along the southern coast of Brazil is linked to the coastal ocean by a narrow mouth and by groundwater transport through a Holocene barrier. Although other groundwater systems are apparently active in this region, the hydraulic head of the lagoon, the largest in South America, drives groundwater transport to the coast. Water levels in wells placed in the barrier respond to changing water level in the lagoon. The wells also provide a measure of the nutrient concentrations of groundwater flowing toward the ocean. Additionally, temporary well points were used to obtain nutrient samples in groundwater on the beach face of the barrier. These samples revealed a subterranean freshwater–seawater mixing zone over a ca. 240 km shoreline. Previously published results of radium isotopic analyses of groundwater and of surface water from cross-shelf transects were used to estimate a water flux of submarine groundwater discharge (SGD) to nearshore surface waters of 8.5 × 10⁷ m³/day. Using this SGD and the nutrient concentrations in different compartments, nutrient fluxes between groundwater and surface water were estimated. Fluxes were computed using both average and median reservoir (i.e. groundwater and surface water) nutrient concentrations. The SGD total dissolved inorganic nitrogen, phosphate and silicate fluxes (2.42, 0.52, 5.92 × 10⁶ mol day^− 1, respectively) may represent as much as 55% (total N) to 10% (Si) of the nutrient fluxes to the adjacent shelf environment. Assuming nitrogen limitation, SGD may be capable of supporting a production rate of ca. 3000 g C m² year^− 1in the nearshore surf zone in this region.     

Decoupling the host and nuclear spectra of type I AGNs using integral field spectroscopy: A test on 3C 120

We have developed a new technique to decouple the spectra of the host and the nucleus of type I AGNs using integral field spectroscopy data. The technique is a simple extension of methods widely tested in 2D imaging. We present here the results from applying the technique to data taken with INTEGRAL at the 4.2 m William Herschel Telescope on the Seyfert 1 radio-galaxy 3C 120. We obtained, for the first time, a clean spectrum of the host galaxy, without contamination from the nuclear source.     

Carbon isotopic fractionation in lipids from methanotrophic bacteria II: the effects of physiology and environmental parameters on the biosynthesis and isotopic signatures of biomarkers

Controls on the carbon isotopic signatures of methanotroph biomarkers have been further explored using cultured organisms. Growth under conditions which select for the membrane-bound particulate form of the methane monooxygenase enzyme (pMMO) leads to a significantly higher isotopic fractionation than does growth based on the soluble isozyme in both RuMP and serine pathway methanotrophs; in an RuMP type the delta delta 13Cbiomass equaled -23.9% for pMMO and -12.6% for sMMO. The distribution of biomarker lipids does not appear to be significantly affected by the dominance of one or the other MMO type and their isotopic compositions generally track those of the parent biomass. The 13C fractionation behaviour of serine pathway methanotrophs is very complex, reflecting the assimilation of both methane and carbon dioxide and concomitant dissimilation of methane-derived carbon. A limitation in CH4 availability leads to the production of biomass which is 13C-enriched with respect to both carbon substrates and this occurs irrespective of MMO type. This startling result indicates that there must be an additional fractionation step downstream from the MMO reaction which leads to incorporation of 13C-enriched carbon at the expense of dissimilation of 13C-depleted CO2. In these organisms, polyisoprenoid lipids are 13C-enriched compared to polymethylenic lipid which is the reverse of that found in the RuMP types. Serine cycle hopanoids, for example, can vary anywhere from 12% depleted to 10% enriched with respect to the CH4 substrate depending on its concentration. Decrease in growth temperature caused an overall increase in isotopic fractionation. In the total biomass, this effect tended to be masked by physiological factors associated with the type of organism and variation in the bulk composition. The effect was, however, clearly evident when monitoring the 13C signature of total lipid and individual biomarkers. Our results demonstrate that extreme carbon isotopic depletion in field samples and fossil biomarker lipids can be indicative of methanotrophy but the converse is not always true. For example, the hopanoids of a serine cycle methanotroph may be isotopically enriched by more than 10% compared to the substrate methane when the latter is limiting. In other words, hopanoids from some methanotrophs such as M. trichosporium would be indistinguishable from those of cyanobacteria or heterotrophic bacteria on the basis of either chemical structure or carbon isotopic signature.