Shock wave phenomena in collisions between a current loop and a plasmoid

We present the results of 3-D MHD simulations of collisions between an equilibrium current and a plasmoid. Three typical equilibrium configurations were analyzed. Our simulation results show that when a plasmoid approaches a current loop, an active region is created in front of the plasmoid bounded on the front side by a bow shock wave and on the back side by a reverse shock wave. The collision process modifies the current system and a strong electric field is also induced in the active region. An additional magnetic field generated by the induced current upsets the initial equilibrium condition. As a result, the whole loop is compressed and heated. We found that when the plasmoid approaches the loop, before reaching it the induced electric field amounts to its maximum value. The current loop is curved under the collision. The core of the plasmoid can not drive into the loop, it is sprung back by a magnetic counterpressure. This collision process between a plasmoid and a current loop may be responsible for the triggering of a solar flare observed by Yohkoh.     

Climate states and variability of Arctic ice and water dynamics during 1946–1997

Recently observed changes in the Arctic have highlighted the need for a better understanding of Arctic dynamics. This research addresses that need and is also motivated by the recent finding of two regimes of Arctic ice - ocean wind-driven circulation. In this paper, we demonstrate that during 1946-1997 the Arctic environmental parameters have oscillated with a period of 10-15 years. Our results reveal significant differences among atmosphere, ice, and ocean processes during the anticyclonic and cyclonic regimes in the Arctic Ocean and its marginal seas. The oscillating behaviour of the Arctic Ocean we call the Arctic Ocean Oscillation (AOO). Based on existing data and results of numerical experiments, we conclude that during the anticyclonic circulation regime the prevailing processes lead to increases in atmospheric pressure, in ice concentration and ice thickness, river runoff, and surface water salinity - as well as to decreases in air temperature, wind speed, number of storms, precipitation, permafrost temperatures, coastal sea level, and surface water temperature. During the cyclonic circulation regime the prevailing processes lead to increased air and water temperatures, wind speed, number of storms,open water periods, and to decreases in ice thickness and ice concentration, river runoff, atmospheric pressure, and water salinity. The two-climate regime theory may help answer questions related to observed decadal variability of the Arctic Ocean and to reconcile the different conclusions among scientists who have analysed Arctic data obtained during different climate states.     

Modelling the wave phenomena in acoustic and elastic media with sharp variations of physical properties using the grid‐characteristic method

This paper introduces a novel method of modelling acoustic and elastic wave propagation in inhomogeneous media with sharp variations of physical properties based on the recently developed grid‐characteristic method which considers different types of waves generated in inhomogeneous linear‐elastic media (e.g., longitudinal, transverse, Stoneley, Rayleigh, scattered PP‐, SS‐waves, and converted PS‐ and SP‐waves). In the framework of this method, the problem of solving acoustic or elastic wave equations is reduced to the interpolation of the solutions, determined at earlier time, thus avoiding a direct solution of the large systems of linear equations required by the FD or FE methods. We apply the grid‐characteristic method to compare wave phenomena computed using the acoustic and elastic wave equations in geological medium containing a hydrocarbon reservoir or a fracture zone. The results of this study demonstrate that the developed algorithm can be used as an effective technique for modelling wave phenomena in the models containing hydrocarbon reservoir and/or the fracture zones, which are important targets of seismic exploration.     

Allogenic and autogenic effects on mangrove dynamics from the Ceará Mirim River,north‐eastern Brazil,during the middle and late Holocene

It is possible that climate changes and sea level fluctuations (allogenic processes) are and will cause major changes in mangrove dynamics. However, other driving forces may be significantly affecting this system. Distinguishing allogenic and autogenic influence on mangroves is a challenging question, because mechanisms related to the natural dynamics of depositional environments (autogenic processes) have strong influences on the establishment and degradation of mangroves. Thus, impacts on mangroves caused by autogenic processes may be erroneously attributed to allogenic mechanisms. Therefore, it is imperative to identify the ‘fingerprint’ of global changes in modern mangrove dynamics. In order to characterize the influence of these forces on mangroves, this work has used geomorphology and vegetation maps integrated with sedimentological and palynological data, radiocarbon dating, as well as δ¹³C, δ¹⁵N and C/N from sedimentary organic matter. The inter‐proxy analyses reveal an estuarine influence with mangrove development along the Ceará Mirim River, north‐eastern Brazil, since ~6920 cal yr bp , after the post‐glacial sea level rise. Relative sea level (RSL) has been stable during the middle and late Holocene. Mangrove establishment along this fluvial valley begins at about 6920 cal yr bp , caused by the sea‐level stabilization, an allogenic influence. However, after its establishment, wetland dynamics were mainly controlled by autogenic factors, related to channel migrations, instead of allogenic process. Some influence of sea‐level and climate changes on mangrove dynamics in this estuarine channel have been weakened by more intense tidal channels activities. Therefore, the expansion and contraction of mangrove areas along the estuary of the Ceará Mirim River since 6920 cal yr bp has been mainly influenced by channel dynamics that regulate the accretion and erosion of mangrove substrates. Copyright © 2018 John Wiley & Sons, Ltd.     

Disks and outflows in the S255IR area of high mass star formation from ALMA observations

We describe the general structure of the well known S255 IR high mass star forming region,as revealed by our recent ALMA observations. The data indicate a physical relation exists between the major clumps SMA1 and SMA2. The driving source of the extended high velocity, well collimated bipolar outflow, is not the most pronounced disk-like SMA1 clump harboring a 20 M_⊙young star(S255 NIRS3), as was assumed earlier. Apparently, it is the less evolved SMA2 clump, which drives the outflow and contains a compact rotating structure(probably a disk). At the same time, the SMA1 clump drives another outflow, with a larger opening angle. The molecular line data do not show an outflow from the SMA3 clump(NIRS1), which was suggested by IR studies of this region.     

Fronts in Large Marine Ecosystems

Oceanic fronts shape marine ecosystems; therefore front mapping and characterization are among the most important aspects of physical oceanography. Here we report on the first global remote sensing survey of fronts in the Large Marine Ecosystems (LME). This survey is based on a unique frontal data archive assembled at the University of Rhode Island. Thermal fronts were automatically derived with the edge detection algorithm of (Cayula and Cornillon, 1992), (Cayula and Cornillon, 1995) and (Cayula and Cornillon, 1996) from 12 years of twice-daily, global, 9-km resolution satellite sea surface temperature (SST) fields to produce synoptic (nearly instantaneous) frontal maps, and to compute the long-term mean frequency of occurrence of SST fronts and their gradients. These synoptic and long-term maps were used to identify major quasi-stationary fronts and to derive provisional frontal distribution maps for all LMEs. Since SST fronts are typically collocated with fronts in other water properties such as salinity, density and chlorophyll, digital frontal paths from SST frontal maps can be used in studies of physical–biological correlations at fronts. Frontal patterns in several exemplary LMEs are described and compared, including those for: the East and West Bering Sea LMEs, Sea of Okhotsk LME, East China Sea LME, Yellow Sea LME, North Sea LME, East and West Greenland Shelf LMEs, Newfoundland–Labrador Shelf LME, Northeast and Southeast US Continental Shelf LMEs, Gulf of Mexico LME, and Patagonian Shelf LME. Seasonal evolution of frontal patterns in major upwelling zones reveals an order-of-magnitude growth of frontal scales from summer to winter. A classification of LMEs with regard to the origin and physics of their respective dominant fronts is presented. The proposed classification lends itself to comparative studies of frontal ecosystems.     

Cloning a new cytochrome P450 isoform (CYP356A1) from oyster Crassostrea gigas

We have cloned the full-length cDNA of the first member of a new cytochrome P450 (CYP) family from the Pacific oyster Crassostrea gigas. This new CYP gene was obtained based on an initial 331bp fragment previously identified among the list of the differentially expressed genes in oysters exposed to untreated domestic sewage. The full-length CYP has an open reading frame of 1500bp and based on its deduced amino acid sequence was classified as a member of a new subfamily, CYP356A1. A phylogenetic analysis showed that CYP356A1 is closely related to members of the CYP17 and CYP1 subfamilies. Semi-quantitative RT-PCR was performed to analyze the CYP356A1 expression in different tissues of the oyster (digestive gland, gill, mantle and adductor muscle). Results showed slightly higher CYP356A1 expression in digestive gland and mantle, than the other tissues, indicating a possible role of the CYP356A1 in xenobiotic biotransformation and/or steroid metabolism.     

Differential gene expression in oyster exposed to sewage

In order to investigate the influence of domestic sewage on the gene expression of Pacific oysters Crassostrea gigas, suppression subtractive hybridization (SSH) method was employed. Oysters were sampled at a farming area and, after 10 days of acclimation in the laboratory, were exposed to untreated domestic sewage diluted 33% for 48 h. Gills of male oysters were excised for total RNA extraction. mRNA was purified and the differential gene expression was analyzed by SSH. We obtained 61 cDNA sequences but only 15 were identified, which includes fatty acid binding protein, multidrug resistance protein, omega glutathione S-transferase, cytochrome P450 isoform CYP356A1, among others. The identified genes are associated with different metabolic functions like biotransformation, membrane transport, aerobic metabolism and translational machinery, evidencing the potential toxic effects elicited by these effluents.     

Comparison of the antioxidant defense system in Crassostrea rhizophorae and Crassostrea gigas exposed to domestic sewage discharges

Oysters Crassostrea rhizophorae and Crassostrea gigas were kept for fourteen days at four sites in S?o José, SC, Brazil, chosen according to a sewage discharge contamination gradient. Enzymatic activities of CAT, GST, G6PDH and GR were evaluated in gills and digestive glands. Higher CAT activity was observed in tissues of C. rhizophorae in response to sewage contamination possibly indicating peroxisome proliferation induction. C. gigas showed elevated G6PDH activity in digestive gland, and GR in gills, after domestic sewage exposure. In conclusion, C. rhizophorae and C. gigas showed different biochemical responses after in situ exposure to domestic sewage. However, C. rhizophorae showed more significant changes in CAT suggesting that this organism could be a better monitor to this kind of effluent.