Preconditioned Optimizing Utility for Large-dimensional analyses (POpULar)

I present the derivation of the Preconditioned Optimizing Utility for Large-dimensional analyses (POpULar), which is developed for adopting a non-diagonal background error covariance matrix in nonlinear variational analyses (i.e., analyses employing a non-quadratic cost function). POpULar is based on the idea of a linear preconditioned conjugate gradient method widely adopted in ocean data assimilation systems. POpULar uses the background error covariance matrix as a preconditioner without any decomposition of the matrix. This preconditioning accelerates the convergence. Moreover, the inverse of the matrix is not required. POpULar therefore allows us easily to handle the correlations among deviations of control variables (i.e., the variables which will be analyzed) from their background in nonlinear problems. In order to demonstrate the usefulness of POpULar, we illustrate two effects which are often neglected in studies of ocean data assimilation before. One is the effect of correlations among the deviations of control variables in an adjoint analysis. The other is the nonlinear effect of sea surface dynamic height calculation required when sea surface height observation is employed in a three-dimensional ocean analysis. As the results, these effects are not so small to neglect.     

Environmental change and oyster colonization within the Hudson River estuary linked to Holocene climate

Geophysical mapping and sampling data provide a record of changing environmental and faunal conditions within the Hudson River estuary during the mid- to late Holocene. On the shallow, broad marginal flats of the mesohaline Hudson, fossil oyster beds (Crassostrea virginica) are found exposed on the river bottom and buried by sediment. The shallowest beds are well imaged in chirp sub-bottom and side-scan sonar data and form discrete flow-perpendicular bands, 0.6–1.0 km wide and up to 3 km long, which cover 30% of the river bottom. Radiocarbon-dated sediment cores indicate oysters thrived within two time periods from ~500–2,400 and ~5,600–6,100 cal. years b.p. Sediment and physical property data indicate a changing depositional regime consistent with the oyster chronology. Similar changes in oyster presence are found in local shell midden sites of the Lower Hudson Valley as well as elsewhere along the Atlantic coast, and may reflect climatic controls associated with warm–cool cycles during the Holocene. Oysters flourished during the mid-Holocene warm period, disappeared with the onset of cooler climate at 4,000–5,000 cal. years b.p., and returned during warmer conditions of the late Holocene. The most recent demise of oysters within the Hudson at 500–900 cal. years b.p. may have accompanied the Little Ice Age.     

Total oxyradical scavenging capacity of the deep-sea amphipod Eurythenes gryllus

Environmental concern for the deep-sea ecosystem is increasing as contaminants, originating from anthropogenic activities, have been detected in deep-sea biota. However, little is known on the xenobiotics metabolising capability of deep-sea fauna. In this study, the deep-sea amphipod Eurythenes gryllus was selected as sentinel species to measure the total oxyradical scavenging capacity (TOSC). Individuals of E. gryllus were sampled at 2000 m depth in the Arctic Ocean. The TOSC assay was measured on the cytosolic fraction and the soluble fraction (3 kDa) of the digestive gland and on the cell-free haemolymph toward peroxyl, hydroxyl and peroxynitrite radicals according to the method of Winston et al. [Free Radical Biology and Medicine 24 (3) (1998) 480] and Regoli and Winston [Toxicology and Applied Pharmacology 156 (1999) 96]. These results provide the first baseline data set for total antioxidant capacity in a deep-sea amphipod.     

Pressure prediction in the Bullwinkle Basin through petrophysics and flow modeling (Green Canyon 65, Gulf of Mexico)

Reservoir pressures within the Bullwinkle minibasin (Green Canyon 65, Gulf of Mexico continental slope) increase at a hydrostatic gradient whereas pressures predicted from porosity within mudstones bounding these reservoirs increase at a lithostatic gradient: they are equal at a depth 1/3 of the way down from the crest of the structure. Two- and three-dimensional steady-state flow models demonstrate that bowl-shaped structures will have lower pressures than equivalent two-dimensional structures and that if a low permeability salt layer underlies the basin, the pressure is reduced. We conclude that at Bullwinkle, pressure is reduced due to an underlying salt body and the bowl-shape of the basin. A geometric approach to predict sandstone pressure is to assume that the reservoir pressure equals the area-weighted average of the mudstone pressure. When the mudstone pressure gradient is constant, as at Bullwinkle, the reservoir pressure equals the mudstone pressure at the average depth (centroid) of the reservoir.     

A case study of a modified gravity type cage and mooring system using numerical and physical models

A modified gravity-type cage, developed by SADCO Shelf Ltd., was examined using numerical and physical models to determine if the cage and mooring system is suitable for an exposed site south of the Isles of Shoals, NH. The 3000-m/sup 3/ SADCO Shelf Submersible Fish Cage has angled stays between the upper framework and the ballasted bottom rim (in addition to net) to resist the horizontal shear deformation. The mooring system consists of three legs-each made up of a taut vertical chain and an angled rope, both leading to deadweight anchors. Normalized response amplitudes (response amplitude operators) were found for motion response in heave, surge and pitch, and load response in the anchor and bridle lines, in regular (single frequency) waves. In addition, a stochastic approach was taken to determine the motion and load transfer functions in random waves using a spectrum representative of seas at the selected site. In general, the system motion had a highly damped response, with no resonant peaks within the wave excitation range of 0.05 to 0.45 Hz. The anchor line force response was at all frequencies below 5 kN per meter of wave amplitude. The physical model tests showed consistently more conservative (larger) results compared to those for the numerical model.     

Experimental investigation of forces and geometry of a net cage in uniform flow

A scale model of a flexible circular net with different weights attached to the bottom was tested in a flume tank. Global forces and net deformation were measured for different steady current velocities. Three different sizes of bottom weights were used in the tests. The results from these tests are presented and discussed with the emphasis on the dependency between the forces and the geometry. Comparison is also made to empirical based formulas for calculation of drag and lift forces on net structures. Findings show that i) the forces on, and deformation of a flexible net structure are mutually highly dependent on each other; ii) estimates of global forces on a flexible net structure calculated using simple drag formulas derived from stiff net panel experiments give large errors when compared to experimental measurements; iii) numerical models taking into account the dependency between force and deformation should be used to obtain accurate estimates of forces on flexible net structures; and iv) the forces on a flexible net structure are dependent on Reynolds number, and their dependency are similar to that of a regular cylinder.     

Surface circulation of the Levantine Basin: Comparison of model results with observations

The eastern Mediterranean (Levantine Basin) hydrography and circulation are investigated by comparing the results of a high-resolution primitive equation model with observations. After a 10-year integration, the model is able to reproduce the major water masses and the circulation patterns of the eastern Mediterranean. Comparisons with the POEM hydrographical observations show good agreement. The vertical distribution of the water masses matches that of the observations quite well in terms of monthly mean. The model surface circulation is in agreement with circulation schemes derived from recent observations. Some well-known mesoscale features of the upper thermocline circulation are also realistically reproduced. In agreement with satellite observations, the model shows that high-energy mesoscale eddies dominate the upper thermocline circulation in the southern and the central parts of the Levantine Basin. Most of the Atlantic Water follows the north African coast and forms a strong coastal jet near the Libyan coast rather than forming the Mid-Mediterranean Jet described by several authors. The sub-basin circulation shows a strong seasonal signal. A strong and stable current flows along the isobaths in winter, becoming weaker and with more meanders in summer. The mesoscale eddies throughout the whole basin are more energetic in summer than in winter.     

Radiation-Geochemical Stability of Bottom Sediments in the Ob and Yenisei Estuaries and Adjacent Shoal Area of the Kara Sea

Oceanology - This paper reports the results of investigations on the radioecological state of bottom sediments of the Ob–Yenisei shoal area and Ob and Yenisei estuaries. Materials were...