Gas hydrate saturation at Site C0002, IODP Expeditions 314 and 315, in the Kumano Basin,Nankai trough

The degree of gas hydrate saturation at Integrated Ocean Drilling Program (IODP) Site C0002 in the Kumano Basin, Nankai Trough, was estimated from logging‐while‐drilling logs and core samples obtained during IODP Expeditions 314 and 315. Sediment porosity data necessary for the calculation of saturation were obtained from both core samples and density logs. Two forms of the Archie equation (‘quick‐look’ and ‘standard’) were used to calculate gas hydrate saturation from two types of electrical resistivity log data (ring resistivity and bit resistivity), and a three‐phase Biot‐type equation was used to calculate gas hydrate saturation from P‐wave velocity log data. The gas hydrate saturation baseline calculated from both resistivity logs ranges from 0% to 35%, and that calculated from the P‐wave velocity log ranges from 0% to 30%. High levels of gas hydrate saturation (>60%) are present as spikes in the ring resistivity log and correspond to the presence of gas hydrate concentrations within sandy layers. At several depths, saturation values obtained from P‐wave velocity data are lower than those obtained from bit resistivity data; this discrepancy is related to the presence of free gas at these depths. Previous research has suggested that gas from deep levels in the Kumano Basin has migrated up‐dip towards the southern and seaward edge of the basin near Site C0002. The high saturation values and presence of free gas at site C0002 suggest that a large gas flux is flowing to the southern and seaward edge of the basin from a deeper and/or more landward part of the Kumano Basin, with the southern edge of the Kumano Basin (the location of site C0002) being the main area of fluid accumulation.     

Preferred orientation of the trace fossil Entradichnus meniscus in eolian dune strata (Djadokhta Formation) at Tugrikiin Shiree,southern Mongolia and its paleoecological implications

Eolian sand dune deposits of the Upper Cretaceous Djadokhta Formation at Tugrikiin Shiree, southern Mongolia, yield not only dinosaur skeletal remains but also numerous trace fossils produced by invertebrates. This paper describes the trace fossil Entradichnus meniscus, a long unlined and unbranched trail that is filled with meniscate laminae and occurs characteristically in positive epirelief. The trail is straight to gently meandering, parallel to the foreset laminae of the eolian dunes, and exhibits a significant preferred orientation parallel to the depositional dip of the cross‐stratification laminae. In addition, almost all the crescentic internal laminae of the trail show concave down‐dips. These features indicate that the trails were produced beneath the slipface of eolian dunes by the downward burrowing of the trace‐makers. This occurrence mode of E. meniscus of the Mongolian Cretaceous is very similar to that described from the Jurassic eolian dune deposits in North America. Hence, the downward burrowing of the E. meniscus animal might be a common feature in arid eolian dune deposits at least during the Jurassic and Cretaceous, and possibly reflecting a behavioral response to the morphology of large sand dunes under an arid climate.     

Characteristics of turbulent boundary layers over a rough bed under saw-tooth waves and its application to sediment transport

A large number of studies have been done dealing with sinusoidal wave boundary layers in the past. However, ocean waves often have a strong asymmetric shape especially in shallow water, and net of sediment movement occurs. It is envisaged that bottom shear stress and sediment transport behaviors influenced by the effect of asymmetry are different from those in sinusoidal waves. Characteristics of the turbulent boundary layer under breaking waves (saw-tooth) are investigated and described through both laboratory and numerical experiments. A new calculation method for bottom shear stress based on velocity and acceleration terms, theoretical phase difference, φ and the acceleration coefficient, a_c expressing the wave skew-ness effect for saw-tooth waves is proposed. The acceleration coefficient was determined empirically from both experimental and baseline k–ω model results. The new calculation has shown better agreement with the experimental data along a wave cycle for all saw-tooth wave cases compared by other existing methods. It was further applied into sediment transport rate calculation induced by skew waves. Sediment transport rate was formulated by using the existing sheet flow sediment transport rate data under skew waves by Watanabe and Sato [Watanabe, A. and Sato, S., 2004. A sheet-flow transport rate formula for asymmetric, forward-leaning waves and currents. Proc. of 29th ICCE, ASCE, pp. 1703–1714.]. Moreover, the characteristics of the net sediment transport were also examined and a good agreement between the proposed method and experimental data has been found.     

Modification of the damping function in the k–ε model to analyse oscillatory boundary layers

A simple relationship has been developed between the wall coordinate y⁺ and Kolmogorov's length scale using direct numerical simulation (DNS) data for a steady boundary layer. This relationship is then utilized to modify two popular versions of low Reynolds number k–ε model. The modified models are used to analyse a transitional oscillatory boundary layer. A detailed comparison has been made by virtue of velocity profile, turbulent kinetic energy, Reynolds stress and wall shear stress with the available DNS data. It is observed that the low Reynolds number models used in the present study can predict the boundary layer properties in an excellent manner.     

Decomposition of Phytoplankton in Seawater. Part I: Kinetic Analysis of the Effect of Organic Matter Concentration

Decomposition experiments were conducted on cultured phytoplankton (Skeletonema costatum) in seawater containing decomposer and consumer of size less than 500 μm. We determined the decomposition rates of bulk particulate organic matter (POM), the ratio of labile to semi-refractory fractions in the POM, and the POM carbon/ nitrogen (C/N) ratio during decomposition. To identify the kinetic mechanisms involved in the reactions of different order (e.g., first- and second-order), we studied the sensitivity of reaction rates to the initial concentration of POM, ranging from 2.4 to 71 mg-C L⁻¹. The results showed that decomposition consists of two first-order reactions: decomposition of labile and of semi-refractory particulate organic carbon (POC). The decomposition rate constants found for labile (0.13 day⁻¹ at 20°C), and semi-refractory POC (0.008 day⁻¹ at 20°C), and the carbon weight ratio of semi-refractory POC (13% at 20°C), were insensitive to the initial organic matter concentration. The time-dependence of the C/N ratio was also independent of this initial concentration. The decomposition rate constants and the content of semi-refractory POC did not change, regardless of the absence or presence of 25–500 μm organisms in natural seawater. This revised version was published online in July 2006 with corrections to the Cover Date.     

Importance of feeding on regenerable parts of prey for juvenile stone flounder Platichthys bicoloratus in estuarine habitats

Prey availability is one of the most important factors affecting the quality of nursery grounds. Estuaries play an important role as nursery grounds for juvenile stone flounder, but the mechanism behind the consistently high availability of prey has never been examined. This study investigates which prey is mainly selected by juvenile stone flounder (15–55 mm standard length) in the estuary of the Natori River, northern Japan. In a cage experiment, juveniles showed positive selection for the palps of the spionid polychaete Pseudopolydora kempi in March, and for the siphons of the bivalve Nuttallia olivacea in April, May and June in both sandy and muddy-sand habitats. This selective predation showed that sublethal predation on regenerable parts of invertebrates is important for stone flounder. Nuttallia olivacea, the dominant bivalve in the estuary, was more abundant and in better somatic condition in the sandy area in spite of the stronger siphon-cropping pressure by juvenile stone flounder. These results confirm that sublethal predation on highly abundant benthos plays an important role in forming estuarine habitats into areas of high prey availability for juvenile stone flounder, which leads to their high growth rate.     

Mesoscale eddy effects on temporal variability of surface chlorophyll a in the Kuroshio Extension

We investigated the relationship between chlorophyll a (Chl-a) concentrations estimated from satellite observations and the activity of eddies in the Kuroshio Extension region. High (low) area-averaged Chl-a concentrations were frequently observed in the core of cyclonic (anticyclonic) eddies. Such relationships between Chl-a concentrations and eddy cores were not frequently observed in the southern part of the recirculation gyre, and advection of background meridional gradient of Chl-a by eddy-edge currents accounted for Chl-a spatial variability. Decadal-scale changes of Chl-a concentrations around the Kuroshio Extension were strongly affected by eddy activity and transport but not by large-scale near-surface isopycnal heaving. We also found that decadal changes of nutrient concentrations near the main stream could affect Chl-a concentrations in the southern part of the recirculation gyre via southward transport of eddies and mean flow.