Micro-FTIR spectroscopic signatures of Bacterial lipids in Proterozoic microfossils

Precambrian microbial fossils show carbonaceous cellular structure, which often resemble in shape and size cyanobacteria and other prokaryotes. Morphological taxonomy of these minute, simple, and more or less degraded fossils is, however, often not enough to determine their precise phylogenetic positions. Here we report the results of micro-FTIR spectroscopic analyses of well-preserved microfossils in 850 Ma and 1900 Ma stromatolites, together with those of 8 species of extant prokaryotes and 5 of eukaryotes for comparison. These Proterozoic fossils have low CH₃/CH₂ absorbance ratios (R_3/2 < 0.5) of aliphatic CH moieties, suggesting selective preservation of long, straight, aliphatic carbon chains probably derived from bacterial membrane lipids. All the observed R_3/2 values of coccoids, filaments and amorphous organic matter resemble lipid fractions of extant Bacteria including cyanobacteria, but not Archaea. The results indicate that Proterozoic microfossils belong to Bacteria, which is consistent with the cyanobacterial origin inferred from morphology. Moreover, the R_3/2 value of fossilized cell would reflect chemical composition of its precursor membrane lipid, thus could be a useful new tracer for distinguishing Archaea, Bacteria and possibly Eucarya for fossilized and extant microorganisms.     

The Kuroshio Current System as a jet and twin “relative” recirculation gyres embedded in the Sverdrup circulation

By analyzing the results of a realistic ocean general circulation model (OGCM) and conducting a series of idealized OGCM experiments, the dynamics of the Kuroshio Current System is examined. In the realistic configuration, the Kuroshio Current System is successfully simulated when the horizontal resolution of OGCMs is increased from 1/2° to 1/10°. The difference between the two experiments shows a jet, the model’s Kuroshio Extension, and a pair of cyclonic and anticyclonic, “relative,” recirculation gyres (RRGs) on the northern and southern flanks of the jet. We call them recirculation gyres because they share some features with ordinary recirculation gyres in previous studies, and we add the adjective “relative” to emphasize that they may not be apparent in the total field. Similar zonal jet and RRGs are obtained also in the idealized model with a rectangular basin and a flat bottom with a horizontal resolution of 1/6°. The northern RRG is generated by the injection of high potential vorticity (PV) created in the viscous sublayer of the western boundary current, indicating the importance of a no-slip boundary condition. Since there is no streamline with such high PV in the Sverdrup interior, the eastward current in the northern RRG region has to lose its PV anomaly by viscosity before connecting to the interior. In the setup stage this injection of high PV is carried out by many eddies generated from the instability of the western boundary current. This high PV generates the northern RRG, which induces the separation of the western boundary current and the formation of the zonal jet. In the equilibrium state, the anomalous high PV values created in the viscous sublayer are carried eastward in the northern flank of the zonal jet. The southern RRG is due to the classical Rhines–Young mechanism, where low PV values are advected northward within the western boundary inertial sublayer, and closed, PV-conserving streamlines form to the south of the Kuroshio Extension, allowing slow homogenization of the low PV anomalies. The westward-flowing southern branch of this southern RRG stabilizes the inertial western boundary current and prevents its separation in the northern half of the Sverdrup subtropical gyre, where the western boundary current is unstable without the stabilizing effect of the southern RRG. Therefore, in the equilibrium state, the southern RRG should be located just to the north of the center of the Sverdrup subtropical gyre, which is defined as the latitude of the Sverdrup streamfunction maximum. The zonal jet (the Kuroshio Extension) and the northern RRG gyre are formed to the north of the southern RRG. This is our central result. This hypothesis is confirmed by a series of sensitivity experiments where the location of the center of the Sverdrup subtropical gyre is changed without changing the boundaries of the subtropical gyre. The locations of the zonal jets in the observed Kuroshio Current System and Gulf Stream are consistent as well. Sensitivities of the model Kuroshio Current System are also discussed with regard to the horizontal viscosity, strength of the wind stress, and coastline.     

Coral Sr/Ca and Mg/Ca records in Con Dao Island off the Mekong Delta: Assessment of their potential for monitoring ENSO and East Asian monsoon

The climate of the South China Sea (SCS) is dominated by the East Asian monsoon (EAM) and can be related to the El Niño-Southern Oscillation (ENSO) owing to the interaction between ENSO and the EAM. An annually-banded coral (Porites sp.) collected from Con Dao Island in the southern SCS was measured for Sr/Ca and Mg/Ca ratios at near-monthly resolution through the annual bands of AD 1948–1999. This island is only ~ 90 km from the Mekong Delta coast and thus significantly influenced by riverine discharge, suggesting relatively severe environmental stress on corals. The Sr/Ca time series shows a clear annual cyclicity chiefly modulated by sea-surface temperature (SST), whereas the Mg/Ca time series exhibits an indistinct annual cyclicity, indicating that the previously-proposed coral Mg/Ca thermometry is greatly disturbed. An instrumental SST record in Con Dao Island (since 1980) has been compared with the Sr/Ca time series to calibrate a Sr/Ca thermometer. The Sr/Ca vs. SST comparison shows that the Sr/Ca thermometer is sometimes disturbed by some factor and that almost all of the disturbances occur around the annual-maximum SST in the warm/wet season. The Sr/Ca data around the annual-minimum SST in the cool/dry season is almost free from the disturbance and thus useful as a SST proxy. The disturbances of the Sr/Ca and Mg/Ca thermometers may be ascribed to the Mekong River discharge and its accompanying phenomena (i.e., large freshwater input, suspended-sediment loads, intense phytoplankton blooms, etc.), which are likely to disturb coral physiological processes. Applying the Sr/Ca thermometer to the whole Sr/Ca time series provides a SST reconstruction from 1948 through 1999. Reconstructed annual-minimum SSTs show a clear quasi-biennial oscillation significantly correlated with ENSO, indicating that the annual-minimum SST in the southern SCS tends to be higher (lower) in El Niño (La Niña) phases. This is compatible with previous observations that the East Asian winter monsoon is weakened (strengthened) in El Niño (La Niña) phases. The reconstructed SST record suggests a warming of 1.0 °C for the latter half of the 20th century. The Sr/Ca and Mg/Ca time series exhibit similar decadal-to-bidecadal variations, which do not seem to be primarily due to SST variability but rather due to some other factor possibly related to disturbance or fluctuation of coral physiological processes. Although both of our Sr/Ca and Mg/Ca data are affected, to a greater or lesser extent, by some non-temperature factor, a part of the Sr/Ca data provides a useful SST proxy and suggests that coral-based SST reconstruction in the southern SCS may be an effective means for monitoring the EAM and ENSO.     

Late Holocene Asian monsoon variations recorded in Lake Rara sediment,western Nepal

The Himalayas are a key location for understanding centennial‐ to millennial‐scale variations in the Asian monsoon, yet few studies of the late Holocene have been conducted in this sensitive area. Direct evidence for shifts in monsoonal wind strength is often limited to marine proxy records, while terrestrial reconstructions (e.g. lake levels and spleothems) focus on precipitation. Here, we present the first evidence of terrestrial summer monsoon wind strength changes from Lake Rara, western Nepal, based on Mn/Ti ratios, a proxy for lake stratification. These data indicate a link between the Arabian Sea and the Himalayas, suggesting that centennial‐ to millennial‐scale changes in wind strength occurred synchronously. Distinct similarity is also observed between Lake Rara and the southern part of China, which may support previous suggestions that the southern part of China is influenced by Indian summer monsoon. Copyright © 2012 John Wiley & Sons, Ltd.     

Alkalinization and acidification of stream water with changes in atmospheric deposition in a tropical dry evergreen forest of northeastern Thailand

Field surveys on atmospheric deposition and stream water chemistry were conducted in an evergreen forest in northeastern Thailand characterized by a tropical savanna climate with distinct dry and wet seasons. Atmospheric deposition of ion constituents by throughfall and stemflow was shown to increase in the beginning and end of the wet season, reflecting the precipitation pattern. The pH and electrical conductivity of stream water increased with alkalinity and base cation concentrations due to mineralization of organic matter by the first rain and retention of anions in soil during the start of the wet season. After initial alkalinization, the pH and alkalinity declined rapidly with the highest SO₄^2? concentration displayed in the middle towards the end of the wet season. The magnitude of peaks in SO₄^2? concentration (13.5–60.6 μmol_c/L) reflects deposition during the first 2 months of the wet season (March and April) in respective years (60.8–170 mol_c/ha). Release of SO₄^2? with H⁺, which is retained in soil during the early wet season, may cause acidification later in the season. The deposition and concentration of SO₄^2? declined over 6 years. However, the pH of stream water declined with increasing concentrations of SO₄^2? and other major ions. The release of materials accumulated in the ecosystem was facilitated by the decrease in SO₄^2? concentration/deposition and increased precipitation in the middle–late wet season. The retention‐release cycle of SO₄^2? largely contributed to both seasonal and interannual variations in stream water chemistry in the tropical savanna climate studied.     

Simulating present climate of the global ocean–ice system using the Meteorological Research Institute Community Ocean Model (MRI.COM): simulation characteristics and variability in the Pacific sector

A long-term spin-up and a subsequent interannual simulation are conducted for the ocean–ice component of the climate model intercomparison project (CMIP)-class earth system model of the Japan Meteorological Agency/Meteorological Research Institute. This experiment has three purposes: first is to assess the ability of our model with the Coordinated Ocean–ice Reference Experiments (COREs) forcing in reproducing the present ocean-climate; second is to understand the ocean-climate variability for the past 60 years; third is to present an example of evaluating an ocean–ice interannual variability simulation. The Pacific Ocean is focused on for the last two purposes. After integrating for about 1500 years with repeated use of a detrended CORE interannual forcing, the model reaches a quasi-steady state where the present climate is reproduced satisfactorily. Then, the interannual variability simulation is conducted with the retrieved forcing trend and the result is analyzed. The simulation is successful at reproducing the long-term variability in the Pacific and surrounding oceans. Brief analyses of the tropical and mid-latitude upper layer, deep circulation, and the Arctic sea ice are presented. A caveat in treating other parts of the globe is due to the recent intense convection in the Southern Ocean caused by a remarkably increasing trend of the Southern Hemisphere westerly. Overall, the current simulation with our CMIP-class ocean–ice model is shown to be useful for studying the present ocean-climate variability, specifically in the Pacific sector. It could also be used as a benchmark control experiment that facilitates further research, model development, and intercomparison.     

Effects of large-scale wind on the Kuroshio path south of Japan in a 60-year historical OGCM simulation

The effects of large-scale wind forcing on the bimodality of the Kuroshio path south of Japan, the large meander (LM) and non-large meander (NLM), were studied by using a historical simulation (1948–2007) with a high-resolution Ocean general circulation models (OGCM). The Kuroshio in this simulation spent much time in the NLM state, and reproduced several aspects of its long-term path variability for the first time in historical OGCM simulation, presumably because the eddy kinetic energy was kept at a moderate level. By using the simulated fields, the relationships between wind forcing (or Kuroshio transport) and path variation proposed by past studies were tested, and specific roles of eddies in those variations were investigated. The long-term variation of the simulated net Kuroshio transport south of Japan was largely explained by the linear baroclinic Rossby wave adjustment to wind forcing. In the simulated LM events, a triggering meander originated from the interaction of a wind-induced positive sea surface height (SSH) anomaly with the upstream Kuroshio and was enlarged by cyclonic eddies from the recirculation gyre. The cyclonic eddy of the trigger meander was followed by a sizable anticyclonic eddy on the upstream side. Subsequently, a weak (strong) Kuroshio favored the LM (NLM). The LM tended to be maintained when the Kuroshio transport off southern Japan was small, and increasing Kuroshio transport promoted decay of an existing LM. The supply of disturbances from upstream, which is related to the wind-induced SSH variability at low latitudes, contributed to the maintenance of an existing LM.     

Monte-Carlo simulations of atmospheric muon production: Implication of the past martian environment

In order to evaluate the obliquity-driven atmospheric-density path length effect on nuclide production rate on Mars, we performed a Monte-Carlo simulation to produce the number of secondary particles such as muons, neutrons and protons in the martian atmosphere and to simulate that production of ¹⁰Be and ³⁶Cl in the martian regolith by muons and neutrons depends on how much atmosphere had been present for the past 10 million years. The vertical profile of the present martian atmosphere to generate secondary particles has been determined based on the data provided by the Viking missions. For other thickness profiles, we scaled Linsley's atmospheric model. Atmospheric shower has been generated with the SIBYLL 2.1 for high-energy hadronic interactions and EHSA for low energy photonuclear interactions. With increasing atmospheric thickness, more primary interactions occur in the atmosphere. Consequently the proton flux is reduced and the secondary cosmic ray flux, such as muons or energetic neutrons increases at surface. The result indicates that the muon production is more sensitive to obliquity-driven atmospheric variations than proton reduction. A thicker atmosphere would result in enhanced nuclide production at a place deeper than 5 m below the surface and the nuclides present in detectable concentrations. Application to the polar deposit is described.