Enzymatic microbial Mn(II) oxidation and Mn biooxide production in the Guaymas Basin deep-sea hydrothermal plume

Microorganisms play important roles in mediating biogeochemical reactions in deep-sea hydrothermal plumes, but little is known regarding the mechanisms that underpin these transformations. At Guaymas Basin (GB) in the Gulf of California, hydrothermal vents inject fluids laden with dissolved Mn(II) (dMn) into the deep waters of the basin where it is oxidized and precipitated as particulate Mn(III/IV) oxides, forming turbid hydrothermal “clouds”. Previous studies have predicted extremely short residence times for dMn at GB and suggested they are the result of microbially-mediated Mn(II) oxidation and precipitation. Here we present biogeochemical results that support a central role for microorganisms in driving Mn(II) oxidation in the GB hydrothermal plume, with enzymes being the primary catalytic agent. dMn removal rates at GB are remarkably fast for a deep-sea hydrothermal plume (up to 2 nM/h). These rapid rates were only observed within the plume, not in background deep-sea water above the GB plume or at GB plume depths (∼1750-2000 m) in the neighboring Carmen Basin, where there is no known venting. dMn removal is dramatically inhibited under anoxic conditions and by the presence of the biological poison, sodium azide. A conspicuous temperature optimum of dMn removal rates (∼40 °C) and a saturation-like (i.e. Michaelis-Menten) response to O₂ concentration were observed, indicating an enzymatic mechanism. dMn removal was resistant to heat treatment used to select for spore-forming organisms, but very sensitive to low concentrations of added Cu, a cofactor required by the putative Mn(II)-oxidizing enzyme. Extended X-ray absorption fine structure spectroscopy (EXAFS) and synchrotron radiation-based X-ray diffraction (SR-XRD) revealed the Mn oxides to have a hexagonal birnessite or δ-MnO₂-like mineral structure, indicating that these freshly formed deep-sea Mn oxides are strikingly similar to primary biogenic Mn oxides produced by laboratory cultures of bacteria. Overall, these results reveal a vigorous Mn biogeochemical cycle in the GB hydrothermal plume, where a distinct microbial community enzymatically catalyzes rapid Mn(II) oxidation and the production of Mn biooxides.     

Fractures, convection and underpressure: hydrogeology on the southern margin of the Piceance basin, west-central Colorado, USA

Grand Mesa is an erosional remnant on the southern margin of the Piceance basin (Colorado, USA) that appears to host topographically driven groundwater flow in low permeability strata via a pervasive network of vertical extensional fractures. The vertical fractures cut more than 1 km of clay-rich lithology ranging in age from Upper Cretaceous through Eocene, and likely formed from horizontal dilation, cooling, and erosional unloading associated with 2.8 km of regional uplift and 1.5 km of incision by the Gunnison and Colorado rivers. The vertical fractures create anisotropy in which vertical permeability exceeds horizontal permeability. This enhances vertical flow and depth of penetration of groundwater, favors local flow regimes over regional flow, and results in groundwater temperatures that are elevated by up to 10°C over mean surface temperatures at the location of springs. The uplift and cooling that formed the fractures may also have produced domains of abnormally underpressured pore fluids and natural gas within blocks of low permeability bedrock bounded by the fractures. Pore pressures inside these blocks may be in disequilibrium with the groundwater flow system due to ongoing stress release, and the long time scales required for pressure equilibration in the low permeability strata.     

Hybrid Gaussian-cubic radial basis functions for scattered data interpolation

Scattered data interpolation schemes using kriging and radial basis functions (RBFs) have the advantage of being meshless and dimensional independent; however, for the datasets having insufficient observations, RBFs have the advantage over geostatistical methods as the latter requires variogram study and statistical expertise. Moreover, RBFs can be used for scattered data interpolation with very good convergence, which makes them desirable for shape function interpolation in meshless methods for numerical solution of partial differential equations. For interpolation of large datasets, however, RBFs in their usual form, lead to solving an ill-conditioned system of equations, for which, a small error in the data can cause a significantly large error in the interpolated solution. In order to reduce this limitation, we propose a hybrid kernel by using the conventional Gaussian and a shape parameter independent cubic kernel. Global particle swarm optimization method has been used to analyze the optimal values of the shape parameter as well as the weight coefficients controlling the Gaussian and the cubic part in the hybridization. Through a series of numerical tests, we demonstrate that such hybridization stabilizes the interpolation scheme by yielding a far superior implementation compared to those obtained by using only the Gaussian or cubic kernels. The proposed kernel maintains the accuracy and stability at small shape parameter as well as relatively large degrees of freedom, which exhibit its potential for scattered data interpolation and intrigues its application in global as well as local meshless methods for numerical solution of PDEs.     

Uncertainty in dam safety risk analysis

The character and importance of uncertainty in dam safety risk analysis drives how risk assessments are used in practice. The current interpretation of uncertainty is that, in addition to the aleatory risk which arises from presumed uncertainty in the world, it comprises the epistemic aspects of irresolution in a model or forecast, specifically model and parameter uncertainty. This is true in part but it is not all there is to uncertainty in risk analysis. The physics of hazards and of failure may be poorly understood, which goes beyond uncertainty in its conventional sense. There may be alternative scenarios of future conditions, for example non-stationarity in the environment, which cannot easily be forecast. There may also be deep uncertainties of the type associated with climate change. These are situations in which analysts do not know or do not agree on the system characterisation relating actions to consequences or on the probability distributions for key parameters. All of these facets are part of the uncertainty in risk analysis with which we must deal.     

Eruptive history of the Barombi Mbo Maar, Cameroon Volcanic Line, Central Africa: Constraints from volcanic facies analysis

his study presents the first and detail field investigations of exposed deposits at proximal sections of the Barombi Mbo Maar (BMM), NE Mt Cameroon, with the aim of documenting its past activity, providing insight on the stratigraphic distribution, depositional process, and evolution of the eruptive sequences during its formation. Field evidence reveals that the BMM deposit is about 126m thick, of which about 20m is buried lowermost under the lake level and covered by vegetation. Based on variation in pyroclastic facies within the deposit, it can be divided into three main stratigraphic units: U₁, U₂ and U₃. Interpretation of these features indicates that U₁ consists of alternating lapilli-ash-lapilli beds series, in which fallout derived individual lapilli-rich beds are demarcated by surges deposits made up of thin, fine-grained and consolidated ash-beds that are well-defined, well-sorted and laterally continuous in outcrop scale. U₂, a pyroclastic fall-derived unit, shows crudely lenticular stratified scoriaceous layers, in which many fluidal and spindle bombs-rich lapilli-beds are separated by very thin, coarse-vesiculatedash-beds, overlain by a mantle xenolith- and accidental lithic-rich explosive breccia, and massive lapilli tuff and lapillistone. U3 displays a series of surges and pyroclastic fall layers. Emplacement processes were largely controlled by fallout deposition and turbulent diluted pyroclastic density currents under “dry” and “wet” conditions. The eruptive activity evolved in a series of initial phreatic eruptions, which gradually became phreatomagmatic, followed by a phreato-Strombolian and a violent phreatomagmatic fragmentation. A relatively long-time break, demonstrated by a paleosol between U₂ and U₃, would have permitted the feeding of the root zone or the prominent crater by the water that sustained the next eruptive episode, dominated by subsequent phreatomagmatic eruptions. These preliminary results require complementary studies, such as geochemistry, for a better understanding of the changes in the eruptive styles, and to develop more constraints on the maar’s polygenetic origin.     

Avalanche and landslide simulation using the material point method: flow dynamics and force interaction with structures

In this paper, the material point method (MPM) is presented as a tool for simulating large deformation, gravity-driven landslides. The primary goal is to assess the interaction of these flow-like events with the built environment. This includes an evaluation of earthen mounds when energy dissipating devices are placed in the path of a snow avalanche. The effectiveness of the embankments is characterized using displacement, velocity, mass, and energy measures. A second example quantifies the force interaction between a landslide and a square rigid column. Multiple slide approach angles are considered, and various aspects of the impact force are discussed.     

Phosphorus Sorption Dynamics of Hawaii’s Coastal Wetlands

While phosphorus (P) sorption has been studied in Hawaii’s terrestrial soils, P sorption dynamics have yet to be investigated in coastal wetlands. In other coastal zones, wetlands have been shown to sorb P and act as P sinks at the land–sea interface. Thus, the objectives of this study were to examine variance in the P sorption index (PSI) within wetlands along hydrologic gradients and among wetlands of different types and to identify soil properties that best explain variability in the PSI. Forty wetlands on five islands were sampled and P sorption and related properties were measured. Phosphorus sorption index values ranged from −16.4–1,732.5. Hydrologic zone (within sites) and surface water salinity (among sites) accounted for significant proportions of the variance in the PSI. While texture, pH, and carbon content were found to be important predictors of PSI, the highest correlations were found for oxalate-extractable iron.     

Carbohydrate sources in a coastal marine environment

Individual neutral sugars in sediments, sediment trap materials and major biological sources of a coastal marine environment (Dabob Bay, Washington State) were analyzed by capillary gas chromatography of equilibrated isomeric mixtures. Plankton, bacteria, and vascular plant tissues of different types yielded reproducible and biochemically consistent compositional patterns. These patterns, when expressed in simple parameters, allowed distinctions between marine and terrestrial carbohydrate sources as well as among the major different types of vascular plant tissues. Plankton and bacteria, due to their compositional diversity, were not further distinguishable by carbohydrate compositions alone. Carbohydrate compositions of Dabob Bay sediments and sediment trap materials, interpreted using source-indicator parameters, indicate a predominantly marine origin with increased relative input of terrestrially-derived carbohydrates in winter periods of low phytoplankton productivity. Both plankton and grasses are indicated as major carbohydrate sources during spring. Glucose yield enhancement factors, determined by comparative acid pretreatments, confirm the general predominance of α-cellulose-poor marine polysaccharides and increased levels of α-cellulose-rich vascular plant remains in winter sediment trap samples.     

燕山地区褶皱冲断带和盆地中的晚侏罗世土城子组/后城组形成分析(英文)

土城子组/后城组为广泛分布在中国北方的燕山褶皱冲断带和盆地中晚侏罗世的典型碎屑岩沉积。本文主要是针对目前在燕山地区的通行的有关土城子组/后城组、及其之下的髫髻山组/蓝旗组,和上覆的张家口组/东岭台组火山岩的相关对比方法提出质疑。其他同行近期发表相关的氩-氩法和铀-铅法同位素测年数据指出髫髻山组/蓝旗组年龄为175~147Ma、土城子组/后城组年龄为156~139Ma、张家口组/东岭台组年龄为147~127Ma,显而易见,上述地层组的年龄是相互重叠的。这些测年数据说明以往的地层对比是有问题的,燕山造山带在中、晚侏罗世所发育的火山岩和沉积岩地层是穿时的。因此,传统上用(165±5)Ma和(135±5)Ma之间的区域不整合来作为划分髫髻山组和后城组的层序界限是值得商榷的。尽管一些髫髻山组的火山岩和土城子组/后城组的沉积岩是与向南或向北的冲断作用相伴生的,但在髫髻山组和土城子组/后城组沉积之间的30~35Ma的时间间隔内却是相对的构造平静期。这一结论是基于以往的髫髻山组和土城子组之间为假整合或平行不整合的观点所得出的。新近基于对承德盆地土城子组地层形成研究分析认为承德冲断层的实际位移距离应小于Davis等2001年所提出的位移距离,笔者接受这一观点。但笔者并不同意在承德地区土城子组的沉积主要是受控于承德北部的向南冲断作用。现今承德向形盆地主要是由于向北冲断的承德县冲断层下盘变形的结果,主要是(1)它向北发生倒转;(2)盆地南部的粗碎屑沉积的物源主要是来源于承德县的异地体。土城子组/后城组的沉积没有必要完全受控于构造作用。土城子组/后城组的沉积是紧随着在燕山部分地区发生的,持续了20~25Ma的髫髻山组/蓝旗组火山及岩浆活动。在中、晚侏罗世期间,燕山地区的岩浆活动必定导致地形的起伏,这就为快速剥蚀及粗碎屑的沉积提供了有利条件。最后需要指出的是,从前所提及的有关燕山带的土城子组/后城组和阴山带的大青山组的地层对比的依据并不存在。     

Contemporary Deposition and Long-Term Accumulation of Sediment and Nutrients by Tidal Freshwater Forested Wetlands Impacted by Sea Level Rise

Contemporary deposition (artificial marker horizon, 3.5 years) and long-term accumulation rates (²¹⁰Pb profiles, ~150 years) of sediment and associated carbon (C), nitrogen (N), and phosphorus (P) were measured in wetlands along the tidal Savannah and Waccamaw rivers in the southeastern USA. Four sites along each river spanned an upstream-to-downstream salinification gradient, from upriver tidal freshwater forested wetland (TFFW), through moderately and highly salt-impacted forested wetlands, to oligohaline marsh downriver. Contemporary deposition rates (sediment, C, N, and P) were greatest in oligohaline marsh and lowest in TFFW along both rivers. Greater rates of deposition in oligohaline and salt-stressed forested wetlands were associated with a shift to greater clay and metal content that is likely associated with a change from low availability of watershed-derived sediment to TFFW and to greater availability of a coastal sediment source to oligohaline wetlands. Long-term accumulation rates along the Waccamaw River had the opposite spatial pattern compared to contemporary deposition, with greater rates in TFFW that declined to oligohaline marsh. Long-term sediment and elemental mass accumulation rates also were 3–9× lower than contemporary deposition rates. In comparison to other studies, sediment and associated nutrient accumulation in TFFW are lower than downriver/estuarine freshwater, oligohaline, and salt marshes, suggesting a reduced capacity for surface sedimentation (short-term) as well as shallow soil processes (long-term sedimentation) to offset sea level rise in TFFW. Nonetheless, their potentially large spatial extent suggests that TFFW have a large impact on the transport and fate of sediment and nutrients in tidal rivers and estuaries.