Differential model of the hydrophysical fields' vertical structure in a stratified tidal flow over a shelf

This paper studies the influence of shelf tidal flows on the structure of surface and near-bottom turbulent boundary layers.Translated by Vladimir A. Puchkin.     

Cloning of the major 3-MC inducible phase I and phase II detoxification enzymes of plaice liver

cDNA's coding for cytochrome P4501A1 (CYP1A1), phenol UDP-glucuronosyltransferase (UDPGT) and glutathione S-transferase (GST-A) were cloned and sequenced from an expression library prepared from the liver of a 3-methylcholanthrene (3-MC) induced plaice. Plaice CYP1A1 and Phenol UDPGT display a high degree of structural conservation with homologous mammalian isoforms and their mRNAs were shown to be highly induced in liver after 3-MC treatment of fish. Expression of plaice GST-A, which displays closer homology to GSTs from plants and invertebrates than those of mammals, is repressed after 3-MC treatment.     

Preferential concentration of marine particles in isotropic turbulence

The effect of small-scale turbulence on marine and aquatic particle transport has traditionally been to act as a means for creating homogeneous distributions. However, previous numerical simulations of heavy particle transport in turbulent flows have shown that particles are preferentially concentrated by turbulence and that effects of preferential concentration are most pronounced for particle parameters comparable to the Kolmogorov scales. Therefore, the focus of the present work is examination of the preferential concentration of marine particles. Application of Kolmogorov scaling indicates that effects of preferential concentration may be important for marine particles with diameters of order 1 mm in the upper mixed layer. Numerical simulations of unstratified isotropic turbulence are then used to support the notion that preferential concentration of particles possessing material characteristics representative of those encountered in marine environments can occur. In the simulations, particles of order 1 mm diameter are idealized as rigid spheres with a density ratio of 1.005. Simulation results demonstrate preferential concentration with peak particle number densities ranging from 10 to 60 times the global mean value. Implications of preferential concentration are also discussed, together with the limitations of the approach employed in the present study.     

Calibration of a chalcogenide glass membrane ion-selective electrode for the determination of free Fe in seawater: I. Measurements in UV photooxidised seawater

Calibration of a chalcogenide glass membrane, Fe(III)ISE [Fe_2.5(Ge₂₈Sb₁₂Se₆₀)_97.5], in buffered saline media has been undertaken in order to assess the suitability of this ISE for seawater analyses. The electrode slopes in saline citrate and salicylate buffers were 26.3 and 28.2 mV/decade, respectively, for Fe³⁺ concentrations ranging from 10⁻¹⁰ M to less than 10⁻²⁵ M Fe³⁺. The calibration lines in the citrate and salicylate buffers were essentially collinear with the response in unbuffered chloride-free standards containing >10⁻⁵ M Fe³⁺, demonstrating that the response of the FeISE is unaffected by chloride ions. A mechanism involving a combination of charge transfer and ion-exchange of Fe(III), at the electrode diffusion layer, can be used to explain the ≈30 mV/decade slope of the FeISE. The response of the FeISE in UV photooxidised seawater containing 8 nM total Fe was measured as the pH was changed from 8.27 to 3.51. The slope of the response was 24.2 mV/decade [Fe³⁺] calculated as a function of pH using Fe(III) hydrolysis constants for seawater. Moreover, the response was essentially collinear with that in citrate buffers and in unbuffered solutions containing >10⁻⁵ M Fe³⁺ and the slope for the combined data was 26.2 mV/decade. This study was restricted to organic-free seawater because the certainty in Fe(III)–ligand stability constants is insufficient to warrant the selection of an ideal calibration buffer system, and there is evidence that powerful chelating ligands (e.g., EDTA along with humic and fulvic acids) may alter the response of the Fe(III)ISE. The Fe dissolution rate of the FeISE in UV photooxidised seawater was found to be 1.6×10⁻² nmol Fe/min, as measured by cathodic stripping voltammetry (CSV). This would contaminate a 100-ml sample by 0.8–1.6 nM Fe over a typical measurement period of 5–10 min obtained using a stability criterion of 0.5 mV/min. Various methods are proposed for reducing the level of contamination in open ocean samples that contain sub-nanomolar concentrations of iron. The FeISE has the potential to detect free Fe³⁺ at concentrations typically found in natural seawater.     

Holocene reef growth in Torres Strait

The platform and fringing reefs of Torres Strait are morphologically similar to reefs of the northern Great Barrier Reef to the south, except that several are elongated in the direction of the strong tidal currents between the Coral Sea and the Gulf of Carpentaria. Surface and subsurface investigations and radiocarbon dating on Yam, Warraber and Hammond Islands reveal that the initiation and mode of Holocene reef growth reflect antecedent topography and sea-level history. On the granitic Yam Island, fringing reefs have established in some places over a Pleistocene limestone at about 6 m depth around 7000 years BP. Emergent Holocene microatolls of Porites sp. indicate that the reefs have prograded seawards while sea level has fallen gradually from at least 0.8 m above present about 5800 years BP. On the Warraber Island reef platform drilling near the centre indicated a Pleistocene limestone foundation at a depth of about 6 m over which reefs established around 6700 years BP. Reef growth lagged behind that on Yam Island. Microatolls on the mature reef flat indicate that the reef reached sea level around 5300 years BP when the sea was around 0.8–1.0 m above present. On the reef flat on the western side of Hammond Island bedrock was encountered at 7–8 m depth, overlain by terrigenous mud. A progradational reef sequence of only 1–2 m thickness has built seaward over these muds, as sea level has fallen over the past 5800 years. Reef-flat progradation on these reefs is interpreted to have occurred by a series of stepwise buildouts marked by lines of microatolls parallel to the reef crest, marking individual coalescing coral heads. Detrital infill has occurred between these. This pattern of reef progradation is consistent with the radiocarbon dating results from these reefs, and with seismic investigations on the Torres Reefs.     

The requirements for stable metallothionein clusters examined using synthetic lobster domains.

Metallothioneins (MTs) are small, cysteine-rich proteins which detoxify xenobiotic metals such as cadmium (Cd) and mercury (Hg). In crustaceans and mammals they consist of two independent domains which are folded around metal-thiolate clusters. MT clusters of different origins, exhibiting distinct, highly conserved cysteine positions on their sequences, show differences in metal-cysteine coordination and reactivity. Lobster-MT, containing two Cd3 beta domains, is an important model for structure-function relationships among the clusters. The influence of (1) the position of the cysteine residues and (2) steric and electrostatic effects of neighboring amino acids on the folding and stability of MT cluster were investigated. Thus, the native lobster beta C and beta N domains (each having nine cysteines and binding three M2+ ions) and a modified domain Cd3 beta C-->N, in which the cysteines of the C-terminal domain were relocated to match the positions of those in the N-terminal domain, were chemically prepared and characterized. The synthetic native domains (Cd3 beta C and Cd3 beta N) were found to exhibit spectroscopic properties, metal-binding affinities and kinetic reactivity similar to the holo-protein. However, the modified Cd3 beta C-->N domain was unusually reactive and in the presence of Chelex, metal chelation resin, aggregated to a Cd5(beta C-->N)2 dimer, which exhibited unusual structure as observed by its 113Cd-nuclear magnetic resonance. These differences in structure and reactivity demonstrated that the requirements for formation of a stable Cd3S9 beta-cluster are more stringent than simply the sequential positions of the cysteines along the peptide chain and must include interactions involving neighboring, noncysteine amino acids.