Digital mapping of coastal boulders – high-resolution data acquisition to infer past and recent transport dynamics

Coastal boulder fields provide clues to long-term frequency-magnitude patterns of coastal flooding events and have the potential to play an important role in coastal hazard assessment. Mapping boulders in the field is time and labour-intensive, and work on intertidal reef platforms, as in the present study, is physically challenging. By addressing coastal scientists who are not specialists in remote sensing, this contribution reports on the possibilities and limitations of digital applications in boulder mapping in Eastern Samar, Philippines, where recent supertyphoons Haiyan and Hagupit induced high waves, coastal flooding and boulder transport. It is demonstrated how satellite imagery of sub-metre resolution (from Pléiades and WorldView-3 imagery) enables efficient analysis of transport vectors and distances of larger boulders, reflecting variation in latitudes of both typhoon tracks and approaching angles of typhoon-generated waves. During the investigated events, boulders with a-axes of up to 8 m were clearly identified to have been shifted for up to 32 m, mostly along the seaward margin of the boulder field. It is, however, hard to keep track of smaller boulders, and the length of a-axes and b-axes including their orientation is often impossible to map with sufficient accuracy. Orthophotographs and digital surface models created through the application of an unmanned aerial vehicle and the ‘Structure from Motion’ technique provide ultra-high-resolution data, and have the potential to not only improve the results of satellite image analysis, but also those from field mapping and may significantly reduce overall time in the field. Orthophotographs permit unequivocal mapping of a-axes and b-axes including their orientation, while precise values for c-axes can be derived from the respective digital surface models. Volume of boulders is best inferred from boulder-specific Structure from Motion-based three-dimensional models. Battery power, flight speed and altitude determine the limits of the area covered, while patches shielded by the boulders are difficult to resolve. For some tasks, field mapping remains mandatory and cannot be replaced by currently available remote sensing tools: for example, sampling for rock type, density and age dating, recording of lithological separation of boulders from the underlying geological unit and of geomorphic features on a millimetre to decimetre-scale, or documentation of fine-grained sediment transport in between the boulders in supratidal settings. In terms of future events, the digital products presented here will provide a valuable reference to track boulder transport on a centimetre to decimetre-scale and to better understand the hydrodynamics of extreme-wave events on a fringing reef coastline.     

Long‐term temporal and spatial patterns in bioeroding sponge distribution at the Abrolhos Bank,Brazil, Southwestern Atlantic

Bioeroding sponges belong to the most dominant bioeroders, significantly contributing to the erosion of coral reefs. Some species are tolerant or even benefit from environmental conditions such as ocean warming, acidification, and eutrophication. In consequence, increases in sponge bioerosion have been observed on some coral reefs over the last decades. The Abrolhos Bank is the largest coral reef system in the South Atlantic. It has been affected by sedimentation, eutrophication, overfishing, and climate change, mainly affecting coastal reefs, and at lesser intensity outer ones as well. This study aimed to describe spatial and temporal patterns in bioeroding sponge distribution in carbonate substrates in the Abrolhos Bank. Photo‐quadrats were used to compare bioeroding sponge abundance between two shallow reefs: a coastal, Pedra de Leste (PL), and an outer reef, Parcel dos Abrolhos (PAB). Each individual was delimitated over the substrate by determining the sponge surface through a line connecting the outermost papillae. The study was conducted over 6 years in 2008–2009 and 2013–2016. Four species of bioeroding sponges were identified: Cliona carteri Ridley, 1881, C. delitrix Pang, 1973, C. cf. schmidtii Ridley, 1881, and Siphonodictyon coralliphagum Rützler, 1971. The distribution and abundance of species varied between the inner and outer reefs and across the years, and displayed certain selectivity for the calcareous substrates recorded. Crustose coralline algae (CCA) were the main substrate excavated by the most abundant bioeroding species, C. carteri, and represented 70% of the substrate types occupied by this sponge (CCA, coral overgrown by CCA and plain coral). The highest abundance of bioeroding sponges observed in photo‐quadrats was 21.3 individuals/m² at the outer reefs (PAB) in 2014. The abundances or areal extents of bioeroding sponges were up to 10 times greater on the outer reefs than on the coastal ones, where sedimentation is higher and more strongly influenced by siliciclastic material. Moreover, a higher herbivorous fish biomass has been reported on outer reefs which could also influence the higher abundance of bioeroding sponges in outer reefs. During the study period of 6 years, an increase in bioeroding sponge abundance was observed at the outer reefs (PAB), with the sea surface temperature increase. As CCA have an important role in reefal cementation and carbonate production in the Abrolhos reefs, a bioerosion impact might be expected, in particular, on the outer reefs.     

Late Cenozoic geomorphologic signal of Andean forearc deformation and tilting associated with the uplift and climate changes of the Southern Atacama Desert (26°S–28°S)

We analyze remarkable examples of the large ( 10,000 km²) and local-scale ( 100 km²) landscape forms related to Late Cenozoic geomorphologic evolution of the Andean forearc region in the Southern Atacama Desert. We also consider the continental sedimentary deposits, so-called “Atacama Gravels”, which are related to the degradation of the landscape during the Neogene. Our analysis integrates 1:50,000 field cartography, Landsat TM images observations,  1:1000 sedimentary logging data, and 50 m horizontal resolution topographic data to reconstruct the Late Cenozoic geomorphologic evolution of this region and discuss the factors that control it, i.e., Miocene aridification of the climate and Neogene Central Andean uplift. We determine that the Precordillera was already formed in the Oligocene and most of the present-day altitude of the Precordillera was reached before that time. Afterward, five episodes of geomorphologic evolution can be differentiated: (1) the development of an Oligocene deep incised drainage system cutting the uplifted Precordillera (up to 2000 m of vertical incision) and connecting it to the Ocean; followed by (2) the infilling of deep incised valleys by up to 400 m of Atacama Gravels. This infill started in the Early Miocene with the development of fluvial deposition and finished in the Middle Miocene with playa and playa lake depositions. We propose that playa-related deposition occurs in an endorheic context related to tectonic activity of the Atacama Fault System and Coastal Cordillera uplift. However, the upward sedimentologic variation in the Atacama Gravels evidences a progressive aridification of the climate. Subsequently, we have identified the effects of the Middle–Upper Miocene slow tectonic deformation: the Neogene Andean uplift is accommodated by a tilting or flexuring of the inner-forearc (Central Depression and Precordillera) related to some hundreds of meters of uplift in the Precordillera. This tilting or flexuring results in (3) the Middle Miocene re-opening of the valley network to the Pacific Ocean. Upper Miocene aridification, from arid to hyperarid, induces alluvial fans backfilling in the Central Depression (4) resulting in up to 50 m of Atacama Gravel deposition. Finally, in response to an increase in the rate of tilting, a new phase of vertical incision (up to 800 m in the Precordillera) allows the development of the canyon that crosses the forearc (5).     

Climatic signals in lacustrine deposits of the Upper Yacoraite Formation,Western Argentina: Evidence from clay minerals,analcime, dolomite and fibrous calcite

Authigenic clays are an important control on reservoir quality in lacustrine carbonates but remain challenging to predict. Lacustrine depositional systems respond to climatic variations in rainfall, surface runoff and groundwater input, and evaporation, and result in rapid and frequent changes in lake volume; this is expressed through changing water depth and shoreline position. In the upper portion of the Early Palaeocene Yacoraite Formation of the Salta Basin in Argentina, extensive lacustrine deposits were deposited during the sag phase of rifting. Prior high-resolution stratigraphic studies have suggested that climatic factors control microbial carbonate sequences within a ‘balanced fill’ lake, with variation in the lake level having a major influence on facies association changes. This study characterizes the evolution of facies and mineralogy within the Yacoraite Formation, focusing on the distribution of clay minerals, making a link between the high, medium and low-frequency sequence stratigraphic cycles. The low-frequency transgressive hemicycle of the upper portion of the Yacoraite Formation is comprised of abundant siliciclastic facies, suggesting a wetter period. Microbialites occurring in this interval are coarse-grained and agglutinated. Detrital clay minerals such as illite and chlorite and associated siliciclastic sediments were input to the lake during high-frequency transgressive periods. During high-frequency regressive hemicycles, sedimentation was dominated by carbonate facies with Ca-rich dolomite and the authigenic clays are comprised of chlorite/smectite mixed-layers. By contrast, the low frequency regressive hemicycle records fine-grained agglutinated microbialite with horizons of fibrous calcite, more stoichiometric dolomite, barite and authigenic magnesian smectite. This indicates elevated ion concentrations in the lake under intense evaporation during an arid period. Understanding the conditions that are favourable for formation and preservation of authigenic clays within the lacustrine environment can improve understanding of reservoir quality in comparable economically important deposits.     

Effective sea ice area based on a thickness threshold

As Arctic sea ice declines in response to climate change, a shift from thick multiyear ice to a thinner ice cover is occurring. With this transition, ice thicknesses approach a threshold below which ice no longer insulates the atmosphere from oceanic surface fluxes. While this is well known, there are no estimates of the magnitude of this threshold, nor of the proportion of sea ice area that is below this threshold as ice thins. We determine this threshold by simulating the atmospheric response to varying thicknesses, ranging from 0.0 to 2.0 m and determine that threshold to be 0.40–0.50 m. The resulting “effective” ice area is 4–14% lower than reported total ice area, as 0.39–0.97 × 10⁶ km² of the total ice area falls below the threshold throughout the twentieth century, including during notable ice minima. The atmosphere above large non-insulating ice-covered regions is susceptible to more than 2 °C of warming despite ice presence. Observed mean Arctic Ocean ice thickness is projected to fall below this threshold as early as the mid-2020s. Studies on ocean–atmosphere interactions in relation to sea ice area should focus on this insulating sea ice area, where ice is at least 0.40–0.50 m thick, and treat ice regions below 0.40–0.50 m thickness with caution.

     

Parallel distributed computing using Python

This work presents two software components aimed to relieve the costs of accessing high-performance parallel computing resources within a Python programming environment: MPI for Python and PETSc for Python.MPI for Python is a general-purpose Python package that provides bindings for the Message Passing Interface (MPI) standard using any back-end MPI implementation. Its facilities allow parallel Python programs to easily exploit multiple processors using the message passing paradigm. PETSc for Python provides access to the Portable, Extensible Toolkit for Scientific Computation (PETSc) libraries. Its facilities allow sequential and parallel Python applications to exploit state of the art algorithms and data structures readily available in PETSc for the solution of large-scale problems in science and engineering.MPI for Python and PETSc for Python are fully integrated to PETSc-FEM, an MPI and PETSc based parallel, multiphysics, finite elements code developed at CIMEC laboratory. This software infrastructure supports research activities related to simulation of fluid flows with applications ranging from the design of microfluidic devices for biochemical analysis to modeling of large-scale stream/aquifer interactions.     

Variability in erosion rates related to the state of landscape transience in the semi‐arid Chilean Andes

We quantify erosion rates in the higher sectors of the Huasco Valley, in the Main Cordillera of the semi‐arid Andes of Chile, using elevation differences between three successive geomorphic markers (pediments and paleo‐valleys) and the present day valley. Available Ar‐Ar ages of Neogene pediments are used to estimate mean erosion rates for the three periods (16 to 13 My, 13 to 8 My, and following 8 My). The landscape of the Huasco Valley is in a transient state, as indicated by well‐preserved pediment surfaces in interfluves, valleys deeply incised by fluvial and glacial erosion and scarped head‐valleys that represent the current knickzones. Higher erosion rates (45–75 m/My) are calculated for the more recent period (< 8 My) during which deep incision developed compared to previous periods (6–31 m/My). Quantitative data indicate that glaciers had a much higher erosional capability than fluvial activity in the higher sectors of the Main Cordillera. Comparison with erosion rates calculated in other drainage basins of the Chilean Andes suggests that the variability of erosion rates depends on the landscape's transient erosive state. The landscape's geomorphologic response to the uplift of the Main Cordillera results in the retreat of a knickzone, for which retreat velocity depends on precipitation rate pattern and glacial erosion intensity. Copyright © 2011 John Wiley & Sons, Ltd.     

Biochemical alterations in juvenile carp (Cyprinus carpio) exposed to zinc: glutathione reductase as a target

The aim of this study was to investigate biochemical changes in juvenile carp (Cyprinus carpio) exposed to zinc chloride (10, 30 and 100 microM) for a period of 48 h. Zinc exposure caused a concentration-dependent reduction in glutathione reductase (GR) activity in gills, liver and brain. Gill glutathione S-transferase (GST) was reduced when animals were exposed to the highest concentration of 100 microM zinc. The phosphorylation of p38(MAPK) increased in the brain of fish exposed to zinc 100 microM, while phosphorylation of the extracellular signal-regulated protein kinase 1/2 (ERK1/2) and c-Jun N-terminal protein kinase 1/2 (JNK1/2) remained unchanged. Expression of proteins HSP60 and HSP70 were not affected by zinc exposure. Considering the significant concentration-dependent inhibition of GR in all tissues analyzed, this enzyme could be a potential biomarker of exposure to zinc, which has to be confirmed.