Nonparametric Estimates of the Sea State Bias for the Jason-1 Radar Altimeter

The Jason-1 sea state bias (SSB) is analyzed in depth from the first year of GDR products. Compared to previous missions, this work benefits from two aspects of the empirical determination of the SSB from the altimetric data themselves. First, from a methodological point of view, a nonparametric technique (NP) has been developed and largely tested on TOPEX/Poseidon 1, GFO and Envisat data. The NP estimator has proven to be a useful tool in the SSB estimation, and it is now mature enough to be used for a refined analysis. On the other hand, the SSB can be extracted from three different data sets (crossovers, collinear data, and residuals) with different characteristics. It is then possible to cross calibrate various estimations of the SSB models and to determine the most accurate one. A systematic comparison is made between these different estimates for the Jason-1 altimeter. The collinear and crossover data sets yield very similar estimates despite their difference of spatial and temporal distributions. These SSB models assure consistency with the TOPEX mission when comparing Jason-1 and TOPEX residuals during the tandem phase. Thanks to the present work, the impact of the short wavelengths filtering on the SSB estimation is evidenced. More generally, our understanding of potential errors affecting the sea surface height and their impact onto the SSB estimation is also improved.     

Morphodynamics of intertidal bars on a megatidal beach, Merlimont, Northern France

The morphology, bedforms and hydrodynamics of Merlimont beach, in northern France, characterised by intertidal bars and a spring tidal range of 8.3 m, were surveyed over a 10-day experiment with variable wave conditions that included a 2-day storm with significant wave heights of up to 2.8 m. The beach exhibited two pronounced bar-trough systems located between the mean sea level and low neap tide level. Waves showed a cross-shore depth modulation, attaining maximum heights at high tide. The mean current was characterised dominantly by strong tide-induced longshore flows significantly reinforced by wind forcing during the storm, and by weaker, dominantly offshore, wave-induced flows. Vertical tidal water-level variations (tidal excursion rates) showed a bimodal distribution with a peak towards the mid-tide position and low rates near low and high water. The two bar-trough systems in the mid-tide zone remained stable in position during the experiment but showed significant local change. The absence of bar migration in spite of the relatively energetic context of this beach reflects high macro-scale bar morphological lag due to a combination of the large vertical tidal excursion rates in the mid-tide zone, the cross-shore wave structure, and the pronounced dual bar-trough system. The profile exhibited a highly variable pattern of local morphological change that showed poor correlation with wave energy levels and tidal excursion rates. Profile change reflected marked local morphodynamic feedback effects due mainly to breaks in slope associated with the bar-trough topography and with trough activity. Change was as important during low wave-energy conditions as during the storm. Strong flows in the entrenched troughs hindered cross-shore bar mobility while inducing longshore migration of medium-sized bedforms that contributed in generating short-term profile change. The large size and location of the two pronounced bars in the mid-tide zone of the beach are tentatively attributed respectively to the relatively high wave-energy levels affecting Merlimont beach, and to the cross-shore increase in wave height hinged on tidal modulation of water depths. These two large quasi-permanent bars probably originated as essentially breakpoint bars and are different from a small bar formed by swash and surf processes in the course of the experiment at the mean high water neap tide level, which is characterised by a certain degree of tidal stationarity and larger high-tide waves.     

Probing molecular-level transformations of dissolved organic matter: insights on photochemical degradation and protozoan modification of DOM from electrospray ionization Fourier transform ion cyclotron resonance mass spectrometry

Molecular-level characterization of natural organic matter (NOM) has been elusive due to the inherent complexity of natural organic mixtures and to the fact that individual components are often polar and macromolecular. Electrospray ionization (ESI) is a “soft” ionization technique that ionizes polar compounds from aqueous solution prior to injection into a mass spectrometer. The highest resolution and mass accuracy of compounds within NOM have been achieved when ESI is combined with an ultrahigh-resolution mass spectrometer such as the Fourier transform ion cyclotron resonance mass spectrometer (FT-ICR MS). With this technique, individual molecules within a variety of natural organic mixtures can be detected and their elemental composition can be determined. At low mass-to-charge (m/z) ratio, the resolution is high enough to assign exact molecular formulas allowing specific components of these mixtures to be identified. In addition to molecular identification, we can now use ESI FT-ICR MS to examine molecular-level changes in different organic mixtures as a function of relevant geo-processes, such as microbial alterations and photochemistry. Here we present the results from the application of ESI FT-ICR MS to two geochemical questions: (1) the effect of photoirradiation on the molecular composition of fulvic acids and (2) the role of protozoan grazers in the modification of DOM in aquatic systems.     

Temperature fluctuations in the atmospheric surface layer over the thermally inhomogeneous underlying surface

The influence of both spatial and temporal temperature inhomogeneities of the underlying surface on the temperature field in an unstably stratified atmospheric surface layer is considered. The methods of correlation and spectral analyses are proposed to estimate statistical characteristics of surface-air temperature fluctuations caused by both turbulent mixing and inhomogeneities in the temperature of the underlying surface. Analysis of experimental data obtained from measurements in the atmospheric surface layer yields estimates for the contribution made by the time-dependent thermal properties of the underlying surface to the total variance of air-temperature fluctuations. It is shown that the additional air-temperature fluctuations generated by surface-temperature inhomogeneities and unrelated to shear flow may reach 70% and 30% of the total variance of measured fluctuations under variable cloudiness and clear skies, respectively. For the height z = 2 m within the wave-number range 2 × 10^?3 rad m^?1 < k < 0.1 rad m^?1, the contribution made by a spatial surface-temperature inhomogeneity to the variance of air-temperature fluctuations does not exceed 10% of the total variance. Correlation and spectral analyses of experimental data make it possible to isolate the spectra of properly turbulent fluctuations from the measured fluctuations and thus to obtain more accurate values of the universal function of similarity theory for temperature in the range of small wave numbers beyond the inertial range.     

Experimental investigation of forces and geometry of a net cage in uniform flow

A scale model of a flexible circular net with different weights attached to the bottom was tested in a flume tank. Global forces and net deformation were measured for different steady current velocities. Three different sizes of bottom weights were used in the tests. The results from these tests are presented and discussed with the emphasis on the dependency between the forces and the geometry. Comparison is also made to empirical based formulas for calculation of drag and lift forces on net structures. Findings show that i) the forces on, and deformation of a flexible net structure are mutually highly dependent on each other; ii) estimates of global forces on a flexible net structure calculated using simple drag formulas derived from stiff net panel experiments give large errors when compared to experimental measurements; iii) numerical models taking into account the dependency between force and deformation should be used to obtain accurate estimates of forces on flexible net structures; and iv) the forces on a flexible net structure are dependent on Reynolds number, and their dependency are similar to that of a regular cylinder.     

Assessment of cytochrome P450 1A in harbour seals (Phoca vitulina) using a minimally-invasive biopsy approach

Biomarkers of organochlorine exposure, such as the induction of cytochrome P450 1A (CYP1A), can be used to assess the impact of environmental contaminants on the health of free-ranging marine mammal populations. The objective of the present study was to measure CYP1A in skin and liver biopsies obtained from live harbour seals (Phoca vitulina). Twelve harbour seal pups, aged three to five weeks, were captured from the Fraser River estuary, British Columbia, Canada, and temporarily held in captivity. Skin ( approximately 60 mg) and liver ( approximately 40 mg) biopsies, obtained while seals were under general anaesthesia, yielded sufficient tissue for the measurement of CYP1A by immunoblot analysis and ethoxyresorufin O-deethylase activity. A short-term exposure experiment, in which harbour seals (n=3) were treated orally with beta-naphthoflavone (BNF), resulted in increased hepatic and cutaneous CYP1A protein levels, consistent with observations in other mammals. This study is the first to measure CYP1A in skin and liver biopsies from live harbour seals and to report in vivo BNF-associated CYP1A induction in a marine mammal. The results demonstrate that microsamples collected using minimally-invasive techniques can provide toxicologically-relevant information form marine mammals.     

Design of a 3D Chirp Sub-bottom Imaging System

Chirp sub-bottom profilers are marine acoustic devices that use a known and repeatable source signature (1–24 kHz) to produce decimetre vertical resolution cross-sections of the sub-seabed. Here the design and development of the first true 3D Chirp system is described. When developing the design, critical factors that had to be considered included spatial aliasing, and precise positioning of sources and receivers. Full 3D numerical modelling of the combined source and receiver directivity was completed to determine optimal source and receiver geometries. The design incorporates four source transducers (1.5–13 kHz) that can be arranged into different configurations, including Maltese Cross, a square and two separated pairs. The receive array comprises 240 hydrophones in 60 groups whose group-centres are separated by 25 cm in both horizontal directions, with each hydrophone group containing four individual elements and a pre-amplifier. After careful consideration, it was concluded that the only way to determine with sufficient accuracy the source–receiver geometry, was to fix the sources and receivers within a rigid array. Positional information for the array is given by a Real Time Kinematic GPS and attitude system incorporating four antennas to give position, heading, pitch and roll. It is shown that this system offers vertical positioning accuracy with a root-mean-square (rms) error less than 2.6 cm, while the horizontal positioning rms error was less than 2.0 cm. The system is configured so that the Chirp source signature can be chosen by software aboard the acquisition vessel. The complete system is described and initial navigational and seismic data results are presented. These data demonstrate that the approach of using fixed source-receiver geometry combined with RTK navigation can provide complete 3D imaging of the sub-surface.