Development of two novel CYP-antibodies and their use in a PCB exposure experiment with Mytilus edulis

In an attempt to learn more about the cytochrome P450 (CYP) system of mussels, we used protein databases and alignment software to extract highly conserved CYP sequences. From these alignments synthetic peptides were produced and used for rabbit immunisation, which yielded polyclonal antibodies against the CYP families 2 and 4. The antibodies were evaluated with Western Blot and ELISA assays, using digestive gland microsomal samples from the mussel Mytilus edulis. Western Blots revealed immunoreactions for both antibodies. The anti-CYP2 sequence rendered one major immunopositive protein of approximately 49 kDa size, and weak signals for proteins of approximately 41 and 56 kDa size. The anti-CYP4 sequence rendered two major bands of approximately 56 and 59 kDa size, and also a weak immunoreaction with a protein of approximately 43 kDa size. ELISA rendered only weak signals even with a 1:50 dilution of IgG-purified serum. A 10-day exposure to Aroclor 1254 did not appear to affect any of the immunopositive proteins, while total PCBs in soft bodies increased from 14-40 ng/g DW in controls to 373-638 ng/g DW in exposed mussels.     

Occurrence of Nummulitic coralline limestone from offshore Palar Basin,Bay of Bengal,India

Abstract

Palar basin is located between Pennar and Cauvery sedimentary basins of East coast of India in Bay of Bengal, northeast Indian Ocean. Sea floor drill (Wire-line Autonomous Coring System – WACS) with operational capability of up to 3000?m water depth was developed to collect long cores from deep sea floor for geotechnical and ocean resource assessment studies. During the drilling operation it encountered Nummulitic coralline limestone of Lower Eocene age at 18 meters below the seafloor (mbsf) at 850?m water depth indicating carbonated platform presence for the first time at the study region. Bathymetry contour from Naval Hydrography Chart and General Bathymetric Chart of the Oceans (GEBCO) has revealed the presence of shallow mounds from 50 to 200?m depth closure contour near the sampling site at 850?m water depth which might be a submerged carbonated structure. Since, Nummulites are shallow water dwelling fauna (<20?m depth) but its occurrence at 18 mbsf in 850?m water depth is recorded because of the advancement in technology tool for long core sampling by means of sea floor drill.     

Wind-driven interannual variability over the northeast Pacific Ocean

Interannual variability of the sea surface height (SSH) over the northeast Pacific Ocean is hindcast with a reduced-gravity, quasi-geostrophic model that includes linear damping. The model is forced with monthly Ekman pumping fields derived from the NCEP reanalysis wind stresses. The numerical solution is compared with SSH observations derived from satellite altimeter data and gridded at a lateral resolution of 1 degree. Provided that the reduced gravity parameter is chosen appropriately, the results demonstrate that the model has significant hindcast skill over interior regions of the basin, away from continental boundaries. A damping time scale of 2 to 3 years is close to optimal, although the hindcast skill is not strongly dependent on this parameter.A simplification of the quasi-geostrophic model is considered in which Rossby waves are eliminated, yielding a Markov model driven by local Ekman pumping. The results approximately reproduce the hindcast skill of the more complete quasi-geostrophic model and indicate that the interannual SSH variability is dominated by the local response to wind forcing. There is a close correspondence the two leading empirical orthogonal modes of the local model and those of the observed SSH anomalies. The latter account for over half of the variance of the interannual signal over the region.     

Mesopelagic fishes of the Bering Sea and adjacent northern North Pacific Ocean

Fourteen midwater trawl collections to depths of 450 m to 1,400 m were taken at eleven stations in the Bering Sea and adjoining regions of the northern North Pacific by the R/V Hakuho Maru during the summer of 1975. A total of 29 kinds of fishes were identified. Mesopelagic fishes of the families Myctophidae, Gonostomatidae and Bathylagidae predominated in the catches, contributing 14 species (94%) of the fishes caught.Seventeen species of fishes were caught in the Bering Sea, and all of these are known from nearby areas. The mesopelagic fish fauna of the Bering Sea is similar to that in adjoining regions of the northern North Pacific Ocean: endemic species are rare or absent. Stenobrachius nannochir was usually the most common mesopelagic fish in our catches.Stenobrachius leucopsarus is a diel vertical migrant that is usually the dominant mesopelagic fish in modified Subarctic waters of the northeastern Pacific. The change in dominance fromS. nannochir in the western Bering Sea toS. leucopsarus in the eastern Bering Sea is related to differences in oceanographic conditions.     

Offshore permafrost and gas hydrate stability zone on the shelf of East Siberian Seas

Dynamics of the submarine permafrost regime, including distribution, thickness, and temporal evolution, was modeled for the Laptev and East Siberian Sea shelf zones. This work included simulation of the permafrost-related gas hydrate stability zone (GHSZ). Simulations were compared with field observations. Model sensitivity runs were performed using different boundary conditions, including a variety of geological conditions as well as two distinct geothermal heat flows (45 and 70 mW/m²). The heat flows used are typical for the coastal lowlands of the Laptev Sea and East Siberian Sea. Use of two different geological deposits, that is, unconsolidated Cainozoic strata and solid bedrock, resulted in the significantly different magnitudes of permafrost thickness, a result of their different physical and thermal properties. Both parameters, the thickness of the submarine permafrost on the shelf and the related development of the GHSZ, were simulated for the last four glacial-eustatic cycles (400,000 years). The results show that the most recently formed permafrost is continuous to the 60-m isobath; at the greater depths of the outer part of the shelf it changes to discontinuous and patchy permafrost. However, model results suggest that the entire Arctic shelf is underlain by relic permafrost in a state stable enough for gas hydrates. Permafrost, as well as the GHSZ, is currently storing probable significant greenhouse gas sources, especially methane that has formed by the decomposition of gas hydrates at greater depth. During climate cooling and associated marine regression, permafrost aggradation takes place due to the low temperatures and the direct exposure of the shelf to the atmosphere. Permafrost degradation takes place during climate warming and marine transgression. However, the temperature of transgressing seawater in contact with the former terrestrial permafrost landscape remains below zero, ranging from –0.5 to –1.8°C, meaning permafrost degradation does not immediately occur. The submerged permafrost degrades slowly, undergoing a transformation in form from ice bonded terrestrial permafrost to ice bearing submarine permafrost that does not possess a temperature gradient. Finally the thickness of ice bearing permafrost decreases from its lower boundary due to the geothermal heat flow. The modeling indicated several other features. There exists a time lag between extreme states in climatic forcing and associated extreme states of permafrost thickness. For example, permafrost continued to degrade for up to 10,000 years following a temperature decline had begun after a climate optimum. Another result showed that the dynamic of permafrost thickness and the variation of the GHSZ are similar but not identical. For example, it can be shown that in recent time permafrost degradation has taken place at the outer part of the shelf whereas the GHSZ is stable or even thickening.     

Variations of antioxidant efficiency and presence of endosymbiotic diatoms in the Antarctic porifera Haliclona dancoi

The role of endosymbiotic diatoms as pro-oxidant stressors in porifera has been investigated in the Antarctic sponge Haliclona dancoi in which the presence of diatoms is influenced by marked seasonal variations during the austral summer. Both chlorophaeopigments and frustules were absent in sponge tissues sampled in early November at the beginning of the summer and increased from the mid of December with slightly shifted temporal trends. The efficiency of antioxidant defenses in the sponge showed a marked response to symbionts with clearly enhanced values corresponding to the peak of diatoms.     

Community structure and dynamics of deep-water decapod assemblages from Le Danois Bank (Cantabrian Sea, NE Atlantic): Influence of environmental variables and food availability

The community structure of the decapod crustaceans inhabiting Le Danois Bank (Cantabrian Sea, NE Atlantic Ocean) was studied on two cruises performed in October 2003 and April 2004. Otter and beam-trawls were used to collect this fauna. At depths ranging between 455 and 1048 m, we found distinct decapod assemblages on the bank summit and deeper in the inner basin (between the bank and the continental shelf). The faunal discontinuity between these groups appeared at around 600 m (e.g. between 612 and 642 m in the basis of species replacement). The summit assemblage was characterized by low diversity (in terms of number and relative abundances of species) and by the dominance of hermit crabs (Pagurus alatus, Anapagurus laevis, Pagurus excavatus), the crangonid Pontophilus spinosus and the squat lobster Munida sarsi. Species characterizing the deeper assemblage, which was richer in terms of diversity, were Munida tenuimana, Parapagurus pilosimanus, Pontophilus norvegicus, the crab Geryon trispinosus and a number of bathypelagic shrimps (Sergia robusta, Acanthephyra pelagica and Pasiphaea tarda). Changes in decapod composition characterized by multidimensional scaling analyses were correlated with different variables, e.g. %mud and %organic matter (OM), temperature and salinity close to the bottom. Among those the %OM and %mud in sediments affected decapod distributions the most. The summit of the bank was covered by fine sediments with low proportion of mud (13.9–29.3%) and OM (2.55–3.50%). By contrast, sediment of the inner basin had a higher proportion of OM and mud (64.1–84.2%; 6.26–7.00%, respectively). The low proportion of mud at the summit of Le Danois Bank may explain the absence or scarcity of burrowing species (e.g. the lobster Nephrops norvegicus, the shrimps Calocaris macandreae and Alpheus glaber and the crab Goneplax rhomboides), that are dominant at similar depths (400–500 m) in the upper muddy assemblage on the mainland-continental slope in the Bay of Biscay (44–46°N). The dominance of certain species on the summit of submarine mounts can probably be related to their biology and feeding ecology. For example, pagurids are deposit feeders, even consuming marine snow (e.g. Chl-a identified in guts of Pagurus alatus), and they have low gut fullness (probably indicating a capacity to withstand long periods under starvation), that would favour their adaptability to a rather unpredictable habitat such as Le Danois Bank summit. Regarding prey availability, zooplankton/micronekton and infauna distributed around Le Danois Bank showed different depth-related patterns. Among zooplankton, mesopelagic decapods, mysids, and fishes were absent at the bank summit, while euphausiids exhibited high abundances over the summit. No significant trends with depth were found for infauna abundance, and for instance polychaete densities were similar both at the summit and the inner basin. Therefore, prey availability was lower for summit assemblages regarding zooplankton/micronekton. Patterns in mean size vs. depth were species specific for decapods, and the possible role of the bank summit as a recruitment area was not general for the whole decapod assemblage.     

A densely sampled core and climate variable aliasing

Undersampled records are susceptible to aliasing, in which a high frequency appears incorrectly as a lower one. We study the sampling requirements in a core taken from Rockall Trough using bulk density, P-wave velocity, and magnetic susceptibility as measured on an automated system. At 2-cm spacing (approximately 33 years in this core), all variables show a characteristic red-noise behavior, but with a spectral slope that is sufficiently weak so that significant aliasing appears to be present. P-wave velocity shows the largest potential corruption, probably owing to the weaker spatial averaging present in the sensor. Approximately 50% of the apparent low-frequency energy is aliased in all variables at some frequencies in both quiet and active regions of the record. In this core, a sampling interval of 0.2 cm appears to be "safe" in both active and quiet portions of the core, aliasing little or no energy, except in the P-wave record. For cores of different duration, sampling interval, and measurement type, the considerations will be identical, the importance of the problem depending directly upon the shape of the overall spectrum describing the entire frequency (wavenumber) range of physical variability.