Basin-scale distribution of prokaryotic phylotypes in the epipelagic layer of the Central South Pacific Ocean during austral summer

In the present study, we used catalyzed reporter deposition-fluorescence in situ hybridization to quantify the abundance of five bacterial (Alphaproteobacteria, SAR11, Gammaproteobacteria, SAR86, and Bacteroidetes) and two archaeal (Crenarchaeota and Euryarchaeota) phylotypes in the epipelagic layer (0–200 m) of the Central South Pacific Ocean along 170°W from 0° to 40°S. We found that the distribution patterns of these phylotypes differed from each other. All phylotypes except Gammaproteobacteria were particularly abundant at the surface water of the equatorial region, whereas Gammaproteobacteria was relatively abundant in the area from the southern part of the South Pacific Ocean. SAR11, affiliated with Alphaproteobacteria was the dominant phylotype at all depths, throughout the study area. The abundance of SAR11 significantly increased with chlorophyll a concentration, suggesting that phytoplankton could affect their distribution pattern. There was a positive correlation between Bacteroidetes abundance and water temperature, suggesting that the temperature gradient could be a critical factor determining their distribution in the South Pacific Ocean. Crenarchaeota and Euryarchaeota were more abundant at the equatorial region than in other study areas. Euryarchaeota abundance significantly decreased with depth, and increased with chlorophyll a concentration. This suggests that there was ecological interaction between Euryarchaeota and phytoplankton in the equatorial surface. Our data indicate that distinct hydrographic properties such as seawater temperature, salinity, and the concentrations of chlorophyll a and nutrients can principally control the basin-scale distribution of different prokaryotic phylotypes in the epipelagic layer of the Central South Pacific Ocean.     

Large-Eddy Simulation of Turbulent Organized Structures within and above Explicitly Resolved Cube Arrays

Large-eddy simulations have been performed for fully developed turbulent flow within and above explicitly resolved simple cube arrays. The results from our model, hereafter LES-CITY, are shown to agree with laboratory experiments. We investigated the systematic influence of cube density on turbulent flow characteristics by performing numerical experiments for cube areal densities from 0 to 44%. The following results were obtained: (1) The dispersive momentum flux was quite large within the canopy layer due to a mean stream re-circulation, whereas it was smaller above the canopy. The spatial variation of temporally averaged momentum in the roughness sub-layer was 20% or less of the total kinematic surface drag. (2) The temporally and spatially-averaged flow structure confirmed the existence of conventionally described canyon flow regimes; isolated, interfacial, and wake. However, the intermittency of the canyon flow for all cube densities was quite large and the stream patterns were never persistent. (3) Turbulent organized structures (TOS) similar to those observed in turbulent surface-layer flows were simulated, which are characterized by longitudinally-elongated low speed streaks and the corresponding shorter streamwise vortices. The streaks in sparse and dense canopy flows were likely to be aligned to the street line and to the roof lines, respectively. Such heterogeneity of TOS partially accounts for the large spatial variation of momentum flux. (4) In contrast to the mixing layer analogy of vegetation flows, the TOS and the resulting turbulent statistics of urban flow above the canopy resembled those in surface layers. The recirculation within the canopy significantly influenced the turbulent statistical properties.     

High-resolution seismic stratigraphy of the Yamato Basin, Japan Sea and its geological application

Abstract High-resolution seismic stratigraphy of the Yamato Basin, Japan Sea, was successfully established using core-log-seismic data integration. The construction of synthetic seismograms by the combination of physical properties and well-log data from the Ocean Drilling Program (ODP) Site 797 was the key to accomplishing the high-resolution seismic stratigraphy. To achieve resolution comparable with well-log data and core lithology, single channel seismic reflection data taken from ODP underway geophysics were reprocessed, and then carefully compared with synthetic seismogram, core and well log profiles to identify seismic units. Ten seismic stratigraphic units were identified at the site, and seismic stratigraphic interpretation was successfully extended from the site to the nearby area along the Yamato Basin margin. The opal-A/opal-CT (biogenic silica/metastable diagenetic silica) boundary has different appearances at places from strong to weak, and mostly discontinuous. One of the significant results achieved from this study is clear distinction of the opal-A/CT boundary from a very strong reflector, which appears at 22 m below the opal-A/CT boundary. Through well-log and physical properties characterization of the different units, resistivity was found to be the best indicator of diatom content and with gamma-ray it also is an indicator of chert layers in the opal-CT zone. Velocity is not greatly effected by diatom ooze in the opal-A zone, however, it shows strong peaks and has an indirect relationship with gamma-ray in the opal-CT zone. Finally, successful correlation of Gamma-ray Attenuation Porosity Evaluator density and resistivity peaks with strong seismic reflectors from upper and lower stratified layers may provide new information on the late Neogene paleoceanography of the Japan Sea in high-resolution scale.