Evaluation of a Photosynthesis-Based Canopy Resistance Formulation in the Noah Land-Surface Model

Accurately representing complex land-surface processes balancing complexity and realism remains one challenge that the weather modelling community is facing nowadays. In this study, a photosynthesis-based Gas-exchange Evapotranspiration Model (GEM) is integrated into the Noah land-surface model replacing the traditional Jarvis scheme for estimating the canopy resistance and transpiration. Using 18-month simulations from the High Resolution Land Data Assimilation System (HRLDAS), the impact of the photosynthesis-based approach on the simulated canopy resistance, surface heat fluxes, soil moisture, and soil temperature over different vegetation types is evaluated using data from the Atmospheric Radiation Measurement (ARM) site, Oklahoma Mesonet, 2002 International H₂O Project (IHOP_2002), and three Ameriflux sites. Incorporation of GEM into Noah improves the surface energy fluxes as well as the associated diurnal cycle of soil moisture and soil temperature during both wet and dry periods. An analysis of midday, average canopy resistance shows similar day-to-day trends in the model fields as seen in observed patterns. Bias and standard deviation analyses for soil temperature and surface fluxes show that GEM responds somewhat better than the Jarvis scheme, mainly because the Jarvis approach relies on a parametrised minimum canopy resistance and meteorological variables such as air temperature and incident radiation. The analyses suggest that adding a photosynthesis-based transpiration scheme such as GEM improves the ability of the land-data assimilation system to simulate evaporation and transpiration under a range of soil and vegetation conditions.     

Evaluation of methods of spatial interpolation for monthly rainfall data over the state of Rio de Janeiro,Brazil

Five deterministic methods of spatial interpolation of monthly rainfall were compared over the state of Rio de Janeiro, southeast Brazil. The methods were the inverse distance weight (IDW), nearest neighbor (NRN), triangulation with linear interpolation (TLI), natural neighbor (NN), and spline tension (SPT). A set of 110 weather stations was used to test the methods. The selection of stations had two criteria: time series longer than 20 years and period of data from 1960 to 2009. The methods were evaluated using cross-validation, linear regression between values observed and interpolated, root mean square error (RMSE), coefficient of determination (r ²), coefficient of variation (CV, %), and the Willmott index of agreement (d). The results from different methods are influenced by the meteorological systems and their seasonality, as well as by the interaction with the topography. The methods presented higher precision (r ²) and accuracy (d, RMSE) during the summer and transition to autumn, in comparison with the winter or spring months. The SPT had the highest precision and accuracy in relation to other methods, in addition to having a good representation of the spatial patterns expected for rainfall over the complex terrain of the state and its high spatial variability.     

Effects of varying densities on serum reproductive parameters in pen-reared juvenile female rainbow trout <Emphasis Type="Italic">Oncorhynchus mykiss</Emphasis> farms

The primary goal of this study was to assess the effect of varying densities on serum reproductive parameters of immature rainbow trout Oncorhynchus mykiss. Experimental trout were maintained in intensive, pen-reared farms for 300 days in fresh water reservoirs. Initial densities were 4.6, 6.6, and 8.6 kg/m³ (40, 60, 80 ind./m³), indicated as SD1, SD2, SD3, and final densities were 31.1, 40.6, 49.3 kg/m³, respectively. A summary of the ovarian stages were observed by histological examination. Serum E₂ (estradiol), T (testosterone) were evaluated by radioimmunoassay and FSH (follicle-stimulating-hormone), LH (luteinizing-hormone), vitellogenin, 17α,20β-P (17α,20βdihydroxy4-pregnen-3-one) were measured by enzyme-linked immunosorbent assay. Our findings demonstrated that ovarian development were retarded (from stage III to stage IV) at highest rearing density (SD3) after 180 days of intensive culture (over 40.6 kg/m³). In addition, we observed an inverse relationship between serum reproductive parameters and rearing density. Furthermore, compared to serum reproductive parameters of SD1, E₂, T, FSH, vitellogenin, 17α,20β-P, GSI and LH of two higher density groups decreased firstly and significantly at 60 (over 15.9 kg/m 3 ), 180 (over 31.7 kg/m 3 ), 180 (over 40.6 kg/m³), 240 (over 36 kg/m³), 240 (over 36 kg/m³), 240 (over 45 kg/m³) and 300 (over 49.3 kg/m³) days, respectively. Comparing serum reproductive parameters within the same ovarian development stage of rainbow trout from varying densities revealed that higher population density also led to significantly lower overall serum reproductive parameters. Overall, this study presents the reproductive, endocrinological parameters of juvenile female rainbow trout at high rearing densities and indicates the need for rainbow trout (114.44±5.21 g, 19.69±0.31 cm) that are initially stocked at 6.6 or 8.6 kg/m³ should be classified and subdivided into lower density after 180 days of farming (not over 31.7 kg/m³).     

Accessibility for High Asia： Comparative Perspectives on Northern Pakistan＇s Traffic Infrastructure and Linkages with Its Neighbours in the Hindukush-Karakoram- Himalaya

Starting with a discussion of development concepts which were applied in practice and which followed the developmentalist paradigm the expansion of traffic infrastructure in colonial and post-colonial periods is presented for the High Asian mountain rim. Selective railways and roads are the major feature of this development, which aimed first on serving the convenience of hill station visitors and followed strategic considerations later on. This bias between regional planning and implementation remains a characteristic feature. At the same time traffic infrastructure without asphalt roads is important for the mountain areas, thus breaking up the strong correlation between development and asphalt roads.     

A dinoflagellate <Emphasis Type="Italic">Cochlodinium geminatum</Emphasis> bloom in the Zhujiang (Pearl) River estuary in autumn 2009

A severe Cochlodinium geminatum red tide (>300 km2) was observed in the Zhujiang (Pearl) River estuary, South China Sea in autumn 2009. We evaluated the environmental conditions and phytoplankton community structure during the outbreak. The red tide water mass had significantly higher dissolved inorganic phosphate (DIP), ammonia, and temperature, but significantly lower nitrite, nitrate, dissolved inorganic nitrogen (DIN), and DIN/DIP relative to the non-red-tide zones. The phytoplankton assemblage was dominated by dinoflagellates and diatoms during the red tide. C. geminatum was the most abundant species, with a peak density of 4.13×107 cell/L, accounting for >65% of the total phytoplankton density. The DIN/DIP ratio was the most important predictor of species, accounting for 12.45% of the total variation in the phytoplankton community. Heavy phosphorus loading, low precipitation, and severe saline intrusion were likely responsible for the bloom of C. geminatum.     

Molecular identification and culture observation on <Emphasis Type="Italic">Acrochaete leptochaete</Emphasis> (Chaetophoraceae,Chlorophyta) from China

Acrochaete leptochaete (Huber) Nielsen (Chaetophoraceae, Chlorophyta) was isolated from the macroalgae Chaetomorpha collected from intertidal pools in Rongcheng, Shandong, China. 18S rDNA combined with ITS regions were used to ascertain the morphological identification of the isolated material. Based on the unialgal culture, asexual reproduction and growth characteristics of A. leptochaete were investigated over wide ranges of temperature and irradiance. Results revealed that asexual reproduction of A. leptochaete could be realized by biflagellate zoospores. The zoospores germinated directly to give self- replicating generations. Zoospore germination was bipolar. A temperature range from 13-21°C and a lower irradiance of 36 μmol/(m2·s) were most favorable for the growth of A. leptochaete. Thallus organization, an important taxonomic criterion for the genus Acrochaete, was affected markedly by temperature and irradiance. Our results extend the knowledge about the species’ general biology and its morphological plasticity. For classification and identification of a simple microphytic algae like A. leptochaete, which are traditionally placed in the class Chaetophoraceae, we propose that molecular tools associated with culture observations are applied.     

BAC end sequencing of Pacific white shrimp <Emphasis Type="Italic">Litopenaeus vannamei</Emphasis>: a glimpse into the genome of Penaeid shrimp

Little is known about the genome of Pacific white shrimp (Litopenaeus vannamei). To address this, we conducted BAC (bacterial artificial chromosome) end sequencing of L. vannamei. We selected and sequenced 7 812 BAC clones from the BAC library LvHE from the two ends of the inserts by Sanger sequencing. After trimming and quality filtering, 11 279 BAC end sequences (BESs) including 4 609 paired- ends BESs were obtained. The total length of the BESs was 4 340 753 bp, representing 0.18% of the L. vannamei haploid genome. The lengths of the BESs ranged from 100 bp to 660 bp with an average length of 385 bp. Analysis of the BESs indicated that the L. vannamei genome is AT-rich and that the primary repeats patterns were simple sequence repeats (SSRs) and low complexity sequences. Dinucleotide and hexanucleotide repeats were the most common SSR types in the BESs. The most abundant transposable element was gypsy, which may contribute to the generation of the large genome size of L. vannamei. We successfully annotated 4 519 BESs by BLAST searching, including genes involved in immunity and sex determination. Our results provide an important resource for functional gene studies, map construction and integration, and complete genome assembly for this species.     

Using unmanned underwater vehicles as research platforms in coastal ocean studies

The advantages of using unmanned underwater vehicles in coastal ocean studies are emphasized. Two types of representative vehicles, remotely operated vehicle (ROV) and autonomous underwater vehicle (AUV) from University of South Florida, are discussed. Two individual modular sensor packages designed and tested for these platforms and field measurement results are also presented. The bottom classification and albedo package, BCAP, provides fast and accurate estimates of bottom albedos, along with other parameters such as in-water remote sensing reflectance. The real-time ocean bottom optical topographer, ROBOT, reveals high-resolution 3-dimentional bottom topography for target identification. Field data and results from recent Coastal Benthic Optical Properties field campaign, 1999 and 2000, are presented. Advantages and limitations of these vehicles and applications of modular sensor packages are compared and discussed.     

Geochemistry and mineralogy of Platinum-group elements in the Ransko gabbro–peridotite massif,Bohemian Massif (Czech Republic)

The Ransko gabbro-peridotite massif in Eastern Bohemia is a strongly differentiated intrusive complex of Lower Cambrian age. The complex hosts low grade Ni-Cu ores mainly developed close to the contact of olivine-rich rocks with gabbros, in troctolites and, to a much lesser extent, in both pyroxene and olivine gabbros and plagioclase-rich peridotites. The ore zone is characterized by strong serpentinization and uralitization. The total Ni + Cu locally reaches up to 4 wt%. Anomalous concentrations of platinum-group elements (PGE's) (maximum 532 ppb Pd, 182 ppb Pt, 53 ppb Rh, 15 ppb Ru, 41 ppb Ir) were detected in samples of Cu-Ni and Ni-Cu ores (maximum 2.63 wt% Ni and 2.31 wt% Cu) from the Jezírka orebody. The main ore paragenesis includes pyrrhotite, pentlandite, chalcopyrite, cubanite, pyrite, magnetite, mackinawite, valleriite, ilmenite and sphalerite. During this work, michenerite, froodite, sperrylite, gold, native bismuth, altaite, tsumoite, hessite, an unnamed Bi-Ni telluride, cobaltite-gersdorffite and galena were newly identified. The host rocks originated through partial melting of a slightly depleted mantle source with noble metals scavenged from this primitive magma prior to the development of these rocks.