Three-dimensional benchmark for variable-density flow and transport simulation: matching semi-analytic stability modes for steady unstable convection in an inclined porous box

This benchmark for three-dimensional (3D) numerical simulators of variable-density groundwater flow and solute or energy transport consists of matching simulation results with the semi-analytical solution for the transition from one steady-state convective mode to another in a porous box. Previous experimental and analytical studies of natural convective flow in an inclined porous layer have shown that there are a variety of convective modes possible depending on system parameters, geometry and inclination. In particular, there is a well-defined transition from the helicoidal mode consisting of downslope longitudinal rolls superimposed upon an upslope unicellular roll to a mode consisting of purely an upslope unicellular roll. Three-dimensional benchmarks for variable-density simulators are currently (2009) lacking and comparison of simulation results with this transition locus provides an unambiguous means to test the ability of such simulators to represent steady-state unstable 3D variable-density physics.     

The effects of climate and landscape position on chemical denudation and mineral transformation in the Santa Catalina mountain critical zone observatory

Understanding the interactions of climate, physical erosion, chemical weathering and pedogenic processes is essential when considering the evolution of critical zone systems. Interactions among these components are particularly important to predicting how semiarid landscapes will respond to forecasted changes in precipitation and temperature under future climate change. The primary goal of this study was to understand how climate and landscape structure interact to control chemical denudation and mineral transformation across a range of semiarid ecosystems in southern Arizona. The research was conducted along the steep environmental gradient encompassed by the Santa Catalina Mountains Critical Zone Observatory (SCM-CZO). The gradient is dominated by granitic parent materials and spans significant range in both mean annual temperature (>10 °C) and precipitation (>50 cm a^?1), with concomitant shift in vegetation communities from desert scrub to mixed conifer forest. Regolith profiles were sampled from divergent and convergent landscape positions in five different ecosystems to quantify how climate-landscape position interactions control regolith development. Regolith development was quantified as depth to paralithic contact and degree of chemical weathering and mineral transformation using a combination of quantitative and semi-quantitative X-ray diffraction (XRD) analyses of bulk soils and specific particle size classes. Depth to paralithic contact was found to increase systematically with elevation for divergent positions at approximately 28 cm per 1000 m elevation, but varied inconsistently for convergent positions. The relative differences in depth between convergent and divergent landscape positions was greatest at the low and high elevation sites and is hypothesized to be a product of changes in physical erosion rates across the gradient. Quartz/Plagioclase (Q/P) ratios were used as a general proxy for bulk regolith chemical denudation. Q/P was generally higher in divergent landscape positions compared to the adjacent convergent hollows. Convergent landscape positions appear to be collecting solute-rich soil–waters from divergent positions thereby inhibiting chemical denudation. Clay mineral assemblage of the low elevation sites was dominated by smectite and partially dehydrated halloysite whereas vermiculite and kaolinite were predominant in the high elevation sites. The increased depth to paralithic contact, chemical denudation and mineral transformation are likely functions of greater water availability and increased primary productivity. Landscape position within a given ecosystem exerts strong control on chemical denudation as a result of the redistribution of water and solutes across the landscape surface. The combined data from this research demonstrates a strong interactive control of climate, landscape position and erosion on the development of soil and regolith.     

Community discourse and the emerging amenity landscapes of the rural American West

We explore the construction of community meaning on an emerging amenity landscape in the western United States through in-depth interviews and ethnographic fieldwork with residents of rural Fremont County, Colorado. The meanings ascribed to community center on different interpretations of home, social interaction, and personal identity. Although in some cases these differences correspond to the conventional division between new and long-term residents, the more significant finding was a discourse of “co-opetition” that captures a broader countywide understanding of community as simultaneous cooperation and competition among local stakeholders. Ultimately, this conceptualization of rural community is a way of negotiating the form and function of the amenity landscape. The production of meaningful social interaction points to opportunities for engaging residents in land management as they interact with one another and the landscape.     

Tidal Stage Changes in Structure and Diversity of Intertidal Benthic Diatom Assemblages: a Case Study from Two Contrasting Charleston Harbor Flats

Benthic microalgae are key contributors to near-shore food webs and sediment stabilization. Temporal variability in microalgal biomass and production throughout the tidal cycle has been well documented; however, due to limitations of traditional methods of analysis patterns of community composition and diversity over such time scales have not been revealed. To explore the latter and better understand how short-term changes throughout the tidal cycle may affect community functioning, we compared benthic diatom composition and diversity over tidal stage shifts. We employed two disparate molecular techniques (denaturing gel gradient electrophoresis with Sanger DNA sequencing of excised bands and high-throughput community metagenome sequencing) to characterize diatom assemblages in representative muddy and sandy intertidal sites in Charleston Harbor, SC, USA. In support of prior studies, we found higher diatom diversity in sandbar as compared to mudflat sediments. Spatial differences were stronger relative to tidal temporal differences, although diversity metrics generally were highest after prolonged tidal immersion as compared to low-tide emersion or just after immersion at flood tide. Composition of the diatom assemblage differed markedly between sites, with species in genera Halamphora, Amphora, and Navicula dominating the sandbar, whereas Cyclotella, Skeletonema, and Thalassiosira were the most prevalent genera on the mudflat. Diatom composition differed by tidal stage, with assemblages during low-tide exposure distinct from samples taken after immersion. Both sandbar and mudflat sediments exhibited increases in relative proportion of epipelic diatoms and decreases in planktonic taxa during low-tide exposure. Our findings of short-term changes in species composition and dominance could inform primary productivity models to better estimate understudied diatom contributions in heterogeneous and highly variable tidal systems.     

Raman spectroscopy and biomarker analysis reveal multiple carbon inputs to a Precambrian glacial sediment

Extractable biomarkers can help elucidate the environment and biota of ancient glaciations, although the method must be applied with care, as glacial sediments have a potential for incorporation of older detrital carbon. In Phanerozoic glacial sediments, the distinct elemental, molecular and isotopic compositions of the terrestrial and marine biomass allow discrimination between primary marine and redeposited terrestrial organic matter. However, as the Proterozoic biosphere was largely microbial and marine, biomarker and isotopic analyses are insufficient for distinguishing primary organic matter from secondary reworked organic matter. Here, we report the combined application of Raman spectroscopy and biomarker analysis to Precambrian glacial sediments, which, together, allows discrimination between mixed pools of organic carbon and provides a promising new approach for rapidly screening Precambrian sediments for immature organic matter amenable to biomarker analysis.     

Inheritance of smolting phenotypes in backcrosses of hybrid stream-type × ocean-type chinook salmon (Oncorhynchus tshawytscha)

Chinook salmon (Oncorhynchus tshawytscha) are ecologically and geographically differentiated into two life history types: “ocean-type,” which enter estuaries as fry or fingerlings in the first year of life and rear there for up to 6 wk before migrating to sea, and “stream-type,” which migrate seaward as smolts after one or more years in fresh water and are only transient residents in the outer portion of estuaries. Following exposure to a long-day priming photoperiod for 2 mo from the time of first feeding, progeny of stream-type chinook salmon undergo a reduction in growth during summer and remain as parr, whereas progeny of ocean-type chinook salmon and hybrids continue to grow during the summer and develop into underyearling smolts. Male purebred and hybrid F₁ progeny of ocean-type and stream-type chinook salmon were backcrossed to females of both parental populations to examine the segregation of photoperiod-independent (smolt) and photoperiod-dependent (parr) phenotypes among progeny. Results of the backcrosses of the hybrid F₁ males depended on female type. The backcross to ocean-type females produced progeny that were predominantly smolts, whereas progeny from the backcross to stream-type females segregated into approximately equal numbers of smolts and parr. These results are consistent with Mendelian inheritance of a single major gene with two alleles: a dominant allele for the photoperiod-independent phenotype of ocean-type chinook salmon and a recessive allele for the photoperiod-dependent phenotype of stream-type chinook salmon.     

Submarine exhalative gold mineralization at the London-Virginia Mine,Buckingham County,Virginia

Low grade submarine exhalative gold mineralization occurs at the London-Virginia deposit in central Virginia Piedmont. The deposit consists of a series of localized but conformable units — basal garnetiferous-chlorite schist, magnetite schist, quartz-muscovite schist, ferruginous quartzite, and chlorite-biotite schist — which represent a mixture of submarine epiclastic volcanic debris and exhalative chemical sediments. Finely disseminated gold occurs dispersed with minor amounts of pyrite, sphalerite, chalcopyrite, galena, and tennantite in the ferruginous quartzite and quartz-muscovite schist. The deposit is believed to have formed by processes analogous to those currently active in the Atlantis II Deep of the Red Sea. Silicarich, hypersaline brines discharged through fractures in the sea floor and ponded in a local basin. Epiosodic influx of clastic debris and extensive deposition of hydrothermal silica diluted the concentration of sulfides and gold to produce a low-grade, siliceous mineralized zone. Emanation from the exhalative vent was terminated when the basin was capped by a lava flow. Subsequent regional greenschist grade metamorphism has recrystallized the silica into a granular quartzite and produced minor remobilization of the gold and sulfides.     

Predicted relative sea-level changes (18,000 years B.P. to present) caused by late-glacial retreat of the Antarctic Ice Sheet

Predictions of global changes in relative sea level caused by retreat of the Antarctic Ice Sheet from its 18,000 yr B.P. maximum to its present size are calculated numerically. When combined with the global predictions of relative sea-level change resulting from retreat of the Northern Hemisphere ice sheets, the results may be compared directly to observations of sea-level change on the Antarctic continent as well as at distant localities. The comparison of predictions to the few observations of sea-level change on Antarctica supports the view that the Antarctic Ice Sheet was larger 18,000 years ago than at present. The contribution of the Antarctic Ice Sheet to the total eustatic sea-level rise is assumed to be 25 m (25% of the assumed total eustatic rise). If as little as 0.7 m of this 25-m rise occurred between 5000 yr B.P. and the present, few mid-oceanic islands would emerge. If the Antarctic Ice Sheet attained its present dimensions by 6000 yr B.P., however, and if the volume of the ocean has remained constant for the past 5000 years, numerous islands throughout the Southern Hemisphere would emerge. It is suggested that a thorough study of Pacific islands, believed by some to have slightly emerged shorelines of Holocene age, would yield useful information about ocean volume changes during the past 5000 years, and hence on the glacial history of the Antarctic Ice Sheet.