Genetic structure of the tall sea pen Funiculina quadrangularis in NW Scottish sea lochs

The tall sea pen Funiculina quadrangularis has a patchy distribution around the UK, being found in sheltered waters below 20 m depth on the northwest coast of Scotland and Ireland. The limited distribution and sensitivity to bottom fishing activities make F. quadrangularis vulnerable to reduction in population numbers that may lead to genetic isolation and reduced diversity. Because of this vulnerability and low resilience to physical disturbance, the tall sea pen is recognised as a Species of Principle Importance under the Natural Environment and Rural Communities Act, 2006, UK. ( http://www.legislation.gov.uk/ukpga/2006/16/contents ) and is also on the Biodiversity Action Plan list of Priority Species for the UK. In the Mediterranean it is recognised as a sensitive and essential fish habitat because it forms habitat for several commercially important crustaceans. The aim of this study was to understand the current state of the genetic structure and gene flow of F. quadrangularis in areas of NW Scotland. We developed 10 microsatellite markers and used them to genotype 176 samples from four populations. Overall, our results suggest that there is high genetic diversity and high gene flow between colonies of F. quadrangularis in and among locations in Loch Linnhe and Loch Duich. As a result of the high rates of gene flow, genetic differentiation between sites was low. This may provide resilience to human impacts if distant populations have a high connectivity. However, care must be taken, as small but significant isolation by distance was found between the most geographically distant sites and only a small part of the species range was examined in this study. The genetic tools developed here will provide a foundation for wider studies of this vulnerable species.     

Underwater Navigation Based on Real-Time Simultaneous Sound Speed Profile Correction

Precise sound speed profile (SSP) information is critical when using sonar for underwater terrain navigation. Nevertheless, acquiring SSP information in real-time is difficult, especially in underwater navigation environment. To account for this problem, this paper presents an underwater navigation method that applies real-time SSP correction to the terrain measurements. The method uses a probe to measure the surface sound speed simultaneously. Meanwhile, redundancy of topographic measurement data is exploited to derive the equivalent SSP information. The acquired equivalent SSP is updated continuously with particle filter algorithm. The terrain measurements can be corrected in real-time with the equivalent SSP to improve the performance of underwater terrain navigation. By removing the impact of inaccurate SSP from the terrain measurements, the proposed method can achieve precise and robust underwater navigation result without using an underway-profiling instrument. Simulated results confirm the good performance of the proposed method.     

Cambridge deep Ocean geophone

We describe recent mechanical andeelectronic modifications to the Cambridge Ocean Bottom Hydrophone system, enabling it to record in addition three geophone channels from a deployed, disposable geophone package. Examples of data from seismic refraction experiments show good correspondence between records of ground motion detected by the hydrophone and the vertical geophone. Seismic signals are undistorted by noise from instrument related sources. Clear examples of P to S conversions just below the receiver are observed. Improved recording conditions are achieved by deploying the geophones in a small pressure vessel as far away as possible from the main instrument package.     

The way forward with ecosystem-based management in tropical contexts: Reconciling with existing management systems

This paper discusses some of the challenges and opportunities that can arise when implementing ecosystem-based management (EBM) in tropical nations. EBM creates a new series of challenges, problems, and opportunities that must be considered in light of existing governance and management frameworks in a local context. The paper presents five case studies from different parts of the tropical world, including Oceania, insular and continental Southeast Asia, East Africa, and the Caribbean, which illustrate that the implementation of EBM in watershed and marine ecosystems offers a new series of challenges and opportunities for its inclusion with existing forms of environmental governance and management. The paper suggests that EBM is best thought of as an expansion of customary management (CM) and integrated coastal management (ICM), rather than a paradigm shift, and that it has certain benefits that are worth integrating into existing systems when possible. The paper concludes that the cultural and institutional context of CM as well as the experience, technical skills, and legal basis that serve ICM programs are logical platforms from which to build EBM programs. Some guidelines for creating hybrid management regimes are suggested. In sum, declining marine species and ecosystems require urgent action, necessitating utilization of existing paradigms such as ICM and CM as a foundation for building EBM.     

Aspects of Deep Ocean Mixing

The turbulent motions responsible for ocean mixing occur on scales much smaller than those resolved in numerical simulations of oceanic flows. Great progress has been made in understanding the sources of energy for mixing, the mechanisms, and the rates. On the other hand, we still do not have adequate answers to first order questions such as the extent to which the thermohaline circulation of the ocean, and hence the earth's climate, is sensitive to the present mixing rates in the ocean interior. Internal waves, generated by either wind or flow over topography, appear to be the principle cause of mixing. Mean and eddy flows over topography generate internal lee waves, while tidal flows over topography generate internal tides. The relative importance of these different internal wave sources is unknown. There are also great uncertainties about the spatial and temporal variation of mixing. Calculations of internal tide generation are becoming increasingly robust, but we do not know enough about the subsequent behavior of internal tides and their eventual breakdown into turbulence. It does seem, however, that most internal tide energy flux is radiated away from generation sites as low modes that propagate over basin scales. The mechanisms of wave-wave interaction and topographic scattering both act to transfer wave energy from low modes to smaller dissipative scales. This revised version was published online in August 2006 with corrections to the Cover Date.     

ENSO related modulation of coastal upwelling in the eastern Atlantic

An index of ENSO in the Pacific during early boreal winter is shown to account for a significant part of the variability of coastal SST anomalies measured a few months later within the wind driven West African coastal upwelling region from 10°N to 26°N. This teleconnection is thought to result from an atmospheric bridge between the Pacific and Atlantic oceans, leading to warm (cold) ENSO events being associated with a relaxation (intensification) of the Atlantic trade winds and of the wind-induced coastal upwelling. This ENSO related modulation of the wind-driven coastal upwelling appears to contribute to the connection observed at the basin-scale between ENSO and SST in the north Atlantic. The ability to use this teleconnection to give warnings of large changes in the West African upwelling several months in advance is successfully tested using data from the 1998 and 1999 ENSO events.     

The importance of interactions for mass loss from satellite galaxies in cold dark matter haloes

We investigate the importance of interactions between dark matter substructures for the mass loss they suffer whilst orbiting within a sample of high-resolution galaxy cluster mass cold dark matter (CDM) haloes formed in cosmological N -body simulations. We have defined a quantitative measure that gauges the degree to which interactions are responsible for mass loss from substructures. This measure indicates that interactions are more prominent in younger systems when compared to older more relaxed systems. We show that this is due to the increased number of encounters a satellite experiences and a higher mass fraction in satellites. This is in spite of the uniformity in the distributions of relative distances and velocities of encounters between substructures within the different host systems in our sample.
Using a simple model to relate the net force felt by a single satellite to the mass loss it suffers, we show that interactions with other satellites account for ∼30 per cent of the total mass loss experienced over its lifetime. The relation between the age of the host and the importance of interactions increases the scatter about this mean value from ∼25 per cent for the oldest to ∼45 per cent for the youngest system we have studied. We conclude that satellite interactions play a vital role in the evolution of substructure in dark matter haloes and that a significant fraction of the tidally stripped material can be attributed to these interactions.