Unique monooxygenation pattern indicates novel flavin-containing monooxygenase in liver of rainbow trout

Vertebrate flavin-containing monooxygenases (FMOs) have only been isolated from mammalian organisms. However, many FMO substrates include pesticides which may adversely affect fish and other aquatic organisms residing in adjacent waterways to treated fields. Although FMO activities have been identified in fish, the exact isoform profile is uncertain. Utilizing prochiral methyl tolyl sulfides (MTS) and isoform-selective antibodies, an attempt was made to identify specific FMO isoforms which may be involved in sulfoxidation reactions which have been shown to bioactivate thioether pesticides, such as aldicarb. Rainbow trout hepatic microsomes treated with detergent to eliminate cytochrome P450 contributions catalyzed the formation of the sulfoxide of MTS in 75% S enantiomeric excess. These catalytic results contrast activities of the five other FMO isoforms including FMO1 (> 98% R) and FMO3 (50% R). Benzydamine N-oxidation was also observed as were methimazole, thiourea, and aldicarb sulfoxidation reactions. Antibodies to FMO1 recognized a single protein of 60 kDa in trout liver microsomes, while anti-FMO3 antibodies only slightly reacted with a 55-kDa microsomal protein. These results indicate a novel isoform profile in rainbow trout liver implicating either a mixture of competing FMO isoforms or a FMO1-like isoform displaying unique catalytic activity.     

Seismic stratigraphy and structure of the Northland Plateau and the development of the Vening Meinesz transform margin,SW Pacific Ocean

The Northland Plateau and the Vening Meinesz “Fracture” Zone (VMFZ), separating southwest Pacific backarc basins from New Zealand Mesozoic crust, are investigated with new data. The 12–16 km thick Plateau comprises a volcanic outer plateau and an inner plateau sedimentary basin. The outer plateau has a positive magnetic anomaly like that of the Three Kings Ridge. A rift margin was found between the Three Kings Ridge and the South Fiji Basin. Beneath the inner plateau basin, is a thin body interpreted as allochthon and parautochthon, which probably includes basalt. The basin appears to have been created by Early Miocene mainly transtensive faulting, which closely followed obduction of the allochthon and was coeval with arc volcanism. VMFZ faulting was eventually concentrated along the edge of the continental shelf and upper slope. Consequently arc volcanoes in a chain dividing the inner and outer plateau are undeformed whereas volcanoes, in various stages of burial, within the basin and along the base of the upper slope are generally faulted. Deformed and flat-lying Lower Miocene volcanogenic sedimentary rocks are intimately associated with the volcanoes and the top of the allochthon; Middle Miocene to Recent units are, respectively, mildly deformed to flat-lying, calcareous and turbiditic. Many parts of the inner plateau basin were at or above sea level in the Early Miocene, apparently as isolated highs that later subsided differentially to 500–2,000 m below sea level. A mild, Middle Miocene compressive phase might correlate with events of the Reinga and Wanganella ridges to the west. Our results agree with both arc collision and arc unzipping regional kinematic models. We present a continental margin model that begins at the end of the obduction phase. Eastward rifting of the Norfolk Basin, orthogonal to the strike of the Norfolk and Three Kings ridges, caused the Northland Plateau to tear obliquely from the Reinga Ridge portion of the margin, initiating the inner plateau basin and the Cavalli core complex. Subsequent N115° extension and spreading parallel with the Cook Fracture Zone completed the southeastward translation of the Three Kings Ridge and Northland Plateau and further opened the inner plateau basin, leaving a complex dextral transform volcanic margin.     

Holocene lake-level trends in the Rocky Mountains, U.S.A.

The availability of water shapes life in the western United States, and much of the water in the region originates in the Rocky Mountains. Few studies, however, have explicitly examined the history of water levels in the Rocky Mountains during the Holocene. Here, we examine the past levels of three lakes near the Continental Divide in Montana and Colorado to reconstruct Holocene moisture trends. Using transects of sediment cores and sub-surface geophysical profiles from each lake, we find that mid-Holocene shorelines in the small lakes (4–110 ha) were as much as 10 m below the modern lake surfaces. Our results are consistent with existing evidence from other lakes and show that a wide range of settings in the region were much drier than today before 3000–2000 years ago. We also discuss evidence for millennial-scale moisture variation, including an abruptly-initiated and -terminated wet period in Colorado from 4400 to 3700 cal yr BP, and find only limited evidence for low-lake stands during the past millennium. The extent of low-water levels during the mid-Holocene, which were most severe and widespread ca 7000–4500 cal yr BP, is consistent with the extent of insolation-induced aridity in previously published regional climate model simulations. Like the simulations, the lake data provide no evidence for enhanced zonal flow during the mid-Holocene, which has been invoked to explain enhanced mid-continent aridity at the time. The data, including widespread evidence for large changes on orbital time scales and for more limited changes during the last millennium, confirm the ability of large boundary-condition changes to push western water supplies beyond the range of recent natural variability.     

Quantifying sources of uncertainty in projected wheat yield changes under climate change in eastern Australia

Future climate projections and impact analyses are pivotal to evaluate the potential change in crop yield under climate change. Impact assessment of climate change is also essential to prepare and implement adaptation measures for farmers and policymakers. However, there are uncertainties associated with climate change impact assessment when combining crop models and climate models under different emission scenarios. This study quantifies the various sources of uncertainty associated with future climate change effects on wheat productivity at six representative sites covering dry and wet environments in Australia based on 12 soil types and 12 nitrogen application rates using one crop model driven by 28 global climate models (GCMs) under two representative concentration pathways (RCPs) at near future period 2021–2060 and far future period 2061–2100. We used the analysis of variance (ANOVA) to quantify the sources of uncertainty in wheat yield change. Our results indicated that GCM uncertainty largely dominated over RCPs, nitrogen rates, and soils for the projections of wheat yield at drier locations. However, at wetter sites, the largest share of uncertainty was nitrogen, followed by GCMs, soils, and RCPs. In addition, the soil types at two northern sites in the study area had greater effects on yield change uncertainty probably due to the interaction effect of seasonal rainfall and soil water storage capacity. We concluded that the relative contributions of different uncertainty sources are dependent on climatic location. Understanding the share of uncertainty in climate impact assessment is important for model choice and will provide a basis for producing more reliable impact assessment.     

Petrochemistry and hydrothermal alteration within the Tyrone Igneous Complex,Northern Ireland: implications for VMS mineralization in the British and Irish Caledonides

Although volcanogenic massive sulfide (VMS) deposits can form within a wide variety of rift-related tectonic environments, most are preserved within suprasubduction affinity crust related to ocean closure. In stark contrast to the VMS-rich Appalachian sector of the Grampian-Taconic orogeny, VMS mineralization is rare in the peri-Laurentian British and Irish Caledonides. Economic peri-Gondwanan affinity deposits are limited to Avoca and Parys Mountain. The Tyrone Igneous Complex of Northern Ireland represents a ca. 484–464 Ma peri-Laurentian affinity arc–ophiolite complex and a possible broad correlative of the Buchans-Robert’s Arm belt of Newfoundland, host to some of the most metal-rich VMS deposits globally. Stratigraphic horizons prospective for VMS mineralization in the Tyrone Igneous Complex are associated with rift-related magmatism, hydrothermal alteration, synvolcanic faults, and high-level subvolcanic intrusions (gabbro, diorite, and/or tonalite). Locally intense hydrothermal alteration is characterized by Na-depletion, elevated SiO₂, MgO, Ba/Sr, Bi, Sb, chlorite–carbonate–pyrite alteration index (CCPI) and Hashimoto alteration index (AI) values. Rift-related mafic lavas typically occur in the hanging wall sequences to base and precious metal mineralization, closely associated with ironstones and/or argillaceous sedimentary rocks representing low temperature hydrothermal venting and volcanic quiescence. In the ca. 475 Ma pre-collisional, calc-alkaline lower Tyrone Volcanic Group rift-related magmatism is characterized by abundant non-arc type Fe-Ti-rich eMORB, island-arc tholeiite, and low-Zr tholeiitic rhyolite breccias. These petrochemical characteristics are typical of units associated with VMS mineralization in bimodal mafic, primitive post-Archean arc terranes. Following arc-accretion at ca. 470 Ma, late rifting in the ensialic upper Tyrone Volcanic Group is dominated by OIB-like, subalkaline to alkali basalt and A-type, high-Zr rhyolites. These units are petrochemically favorable for Kuroko-type VMS mineralization in bimodal-felsic evolved arc terranes. The scarcity of discovered peri-Laurentian VMS mineralization in the British and Irish Caledonides is due to a combination of minimal exploration, poor-preservation of upper ophiolite sequences, and limited rifting in the Lough Nafooey arc of western Ireland. The geological and geochemical characteristics of the Tyrone Volcanic Group of Northern Ireland and peri-Gondwanan affinity arc/backarc sequences of Ireland and northwest Wales represent the most prospective sequences in the British and Irish Caledonides for VMS mineralization.     

Zeolitization of intracaldera sediments and rhyolitic rocks in the 1.25 Ma lake of Valles caldera,New Mexico,USA

Quantitative X-ray diffraction analysis of about 80 rhyolite and associated lacustrine rocks has characterized previously unrecognized zeolitic alteration throughout the Valles caldera resurgent dome. The alteration assemblage consists primarily of smectite–clinoptilolite–mordenite–silica, which replaces groundmass and fills voids, especially in the tuffs and lacustrine rocks. Original rock textures are routinely preserved. Mineralization typically extends to depths of only a few tens of meters and resembles shallow “caldera-type zeolitization” as defined by Utada et al. [Utada, M., Shimizu, M., Ito, T., Inoue, A., 1999. Alteration of caldera-forming rocks related to the Sanzugawa volcanotectonic depression, northeast Honshu, Japan — with special reference to “caldera-type zeolitization.” Resource Geol. Spec. Issue No. 20, 129–140]. Geology and ⁴⁰Ar/³⁹Ar dates limit the period of extensive zeolite growth to roughly the first 30 kyr after the current caldera formed (ca. 1.25 to 1.22 Ma). Zeolitic alteration was promoted by saturation of shallow rocks with alkaline lake water (a mixture of meteoric waters and degassed hydrothermal fluids) and by high thermal gradients caused by cooling of the underlying magma body and earliest post-caldera rhyolite eruptions. Zeolitic alteration of this type is not found in the later volcanic and lacustrine rocks of the caldera moat (≤ 0.8 Ma) suggesting that later lake waters were cooler and less alkaline. The shallow zeolitic alteration does not have characteristics resembling classic, alkaline lake zeolite deposits (no analcime, erionite, or chabazite) nor does it contain zeolites common in high-temperature hydrothermal systems (laumontite or wairakite). Although aerially extensive, the early zeolitic alteration does not form laterally continuous beds and are consequently, not of economic significance.     

Postglacial fire, vegetation, and climate history in the Clearwater Range, Northern Idaho, USA

The environmental history of the Northern Rocky Mountains was reconstructed using lake sediments from Burnt Knob Lake, Idaho, and comparing the results with those from other previously published sites in the region to understand how vegetation and fire regimes responded to large-scale climate changes during the Holocene. Vegetation reconstructions indicate parkland or alpine meadow at the end of the glacial period indicating cold-dry conditions. From 14,000 to 12,000 cal yr B.P., abundant Pinus pollen suggests warmer, moister conditions than the previous period. Most sites record the development of a forest with Pseudotsuga ca. 9500 cal yr B.P. indicating warm dry climate coincident with the summer insolation maximum. As the amplification of the seasonal cycle of insolation waned during the middle Holocene, Pseudotsuga was replaced by Pinus and Abies suggesting cool, moist conditions. The fire reconstructions show less synchroneity. In general, the sites west of the continental divide display a fire-frequency maximum around 12,000–8000 cal yr B.P., which coincides with the interval of high summer insolation and stronger-than-present subtropical high. The sites on the east side of the continental divide have the highest fire frequency ca. 6000–3500 cal yr B.P. and may be responding to a decrease in summer precipitation as monsoonal circulation weakened in the middle and late Holocene. This study demonstrated that the fire frequency of the last two decades does not exceed the historical range of variability in that periods of even higher-than-present fire frequency occurred in the past.     

Morphology and geology of the ILD in Capri/Eos Chasma (Mars) from visible and infrared data

Layered deposits have been observed in different locations at the surface of Mars, as crater floors and canyons systems. Their high interest relies in the fact they imply dynamical conditions in their deposition medium. Indeed, in opposition to most of the rocks of the martian surface, which have a volcanic origin, bright layered deposits seems to be sedimentary outcrops.Capri Chasma, a canyon located at the outlet of Valles Marineris, exhibits such deposits called Interior Layered Deposits (ILD). A large array of visible and infrared spacecraft data were used to build a Geographic Information System (GIS). We added HiRiSE images, from the recent MRO mission, which offer a spatial resolution of 25 cm per pixel. It allowed the mapping and the analysis of morphologies in the canyon. We highlighted that the ILD are several kilometers thick and flat-top stratified deposits. They overlap the chaotic floor. They are surrounded and cut by several flow features that imply that liquid water was still acting after the formation of these stratified deposits. The density of crater on the floor of Capri Chasma was quantified. The current topography was aged to 3 Gyr. All these morphological information allow us to suggest a plausible geological history for Capri Chasma. We propose that the Interior Layered Deposits have formed during the Hesperian, during or after the opening of the canyon. Some observations argue that water discharges have happened at several times before and just after the formation of the ILD. Liquid water must have played a major role in the formation of these deposits after 3.5 Gyr, implying that it was present in surface at least locally and temporarily. If this can be applied to ILD in others canyons of Valles Marineris, it would imply that liquid water was stable in surface or sub-surface during the Hesperian. Or in the actual conditions, with a cold and dry martian surface, long-term standing water bodies are not possible. Thus we suggest that either the climate at the Hesperian was cold, but wetter, or as warm as the Noachian climate, what is less likely. Nevertheless, the global climate change which has occurred at the beginning of Mars history may have been later than announced.     

Holocene vegetation, fire and climate history of the Sawtooth Range, central Idaho, USA

The paucity of low- and middle-elevation paleoecologic records in the Northern Rocky Mountains limits our ability to assess current environmental change in light of past conditions. A 10,500-yr-long vegetation, fire and climate history from Lower Decker Lake in the Sawtooth Range provides information from a new region. Initial forests dominated by pine and Douglas-fir were replaced by open Douglas-fir forest at 8420 cal yr BP, marking the onset of warmer conditions than present. Presence of closed Douglas-fir forest between 6000 and 2650 cal yr BP suggests heightened summer drought in the middle Holocene. Closed lodgepole pine forest developed at 2650 cal yr BP and fires became more frequent after 1450 cal yr BP. This shift from Douglas-fir to lodgepole pine forest was probably facilitated by a combination of cooler summers, cold winters, and more severe fires than before. Five drought episodes, including those at 8200 cal yr BP and during the Medieval Climate Anomaly, were registered by brief intervals of lodgepole pine decline, an increase in fire activity, and mistletoe infestation. The importance of a Holocene perspective when assessing the historical range of variability is illustrated by the striking difference between the modern forest and that which existed 3000 yr ago.     

Evaluating qualitative research: dealing with the tension between 'science' and 'creativity'

Summary This paper responds to recent calls for detailed evaluative criteria for qualitative research in human geography. It argues that the dualism between 'science' and 'creativity' is unfounded, and that while systematic methods of evaluation are required, standardization is inappropriate. Furthermore, it seeks to demonstrate that grounded theory provides an alternative framework that demonstrates how these ideas might be put into practice.