Lipids and pigments in deep-sea surface sediments and interfacial particles from the Western Crozet Basin

Deep-sea sediment samples were collected in the Western Crozet Basin (Indian sector of the Southern Ocean) through Permanently Open Ocean Zone (POOZ), Polar Frontal Zone (PFZ) and Sub-Antarctic Zone (SAZ). Lipid class and fatty acid compositions were investigated to determine the sources and fate of organic matter in the first centimeter of sediment and, above this layer, in the fluff (when present) and particles in the overlying water. The total lipid content varied from 74 to 1033 μg l⁻¹ in the overlying particles and fluffs, and from 24 to 97 μg g⁻¹ dry mass (DM) in surficial sediments. Lipid composition was always dominated by phospholipids in the first centimeter of sediment and often in the overlying particles. The amount of phospholipids (labile compounds representative of fresh material) was compared to the amount of chlorophyll a (Chl a), another compound that is susceptible to rapid degradation. A strong N–S gradient was observed in the distribution of these two compounds, which was attributed to the contrasting hydrodynamic of the study area. The high sedimentation rate in POOZ resulted in better preservation of Chl a in this zone than in other zones of the Crozet Basin (PFZ and SAZ). Phospholipid fatty acids suggested the presence of viable as well as morphologically intact organisms, and these organisms consisted essentially of bacteria with some diatom cysts in the fluff of POOZ. These spores were able to grow in the culture, indicating that they were still viable. Despite the strong hydrodynamic variability, phospholipid fatty acids analysed from the deep-sea surficial sediments were never representative of plankton. This pointed to the extremely labile nature of the phospholipids originally present in planktonic material compared with Chl a, which was always found in overlying particles and surficial sediments.     

Development of a regional neural network for coastal water level predictions

This paper presents the development of a Regional Neural Network for Water Level (RNN_WL) predictions, with an application to the coastal inlets along the South Shore of Long Island, New York. Long-term water level data at coastal inlets are important for studying coastal hydrodynamics sediment transport. However, it is quite common that long-term water level observations may be not available, due to the high cost of field data monitoring. Fortunately, the US National Oceanographic and Atmospheric Administration (NOAA) has a national network of water level monitoring stations distributed in regional scale that has been operating for several decades. Therefore, it is valuable and cost effective for a coastal engineering study to establish the relationship between water levels at a local station and a NOAA station in the region. Due to the changes of phase and amplitude of water levels over the regional coastal line, it is often difficult to obtain good linear regression relationship between water levels from two different stations. Using neural network offers an effective approach to correlate the non-linear input and output of water levels by recognizing the historic patterns between them. In this study, the RNN_WL model was developed to enable coastal engineers to predict long-term water levels in a coastal inlet, based on the input of data in a remote NOAA station in the region. The RNN_WL model was developed using a feed-forwards, back-propagation neural network structure with an optimized training algorithm. The RNN_WL model can be trained and verified using two independent data sets of hourly water levels.The RNN_WL model was tested in an application to Long Island South Shore. Located about 60–100 km away from the inlets there are two permanent long-term water level stations, which have been operated by NOAA since the1940s. The neural network model was trained using hourly data over a one-month period and validated for another one-month period. The model was then tested over year-long periods. Results indicate that, despite significant changes in the amplitudes and phases of the water levels over the regional study area, the RNN_WL model provides very good long-term predictions of both tidal and non-tidal water levels at the regional coastal inlets. In order to examine the effects of distance on the RNN_WL model performance, the model was also tested using water levels from other remote NOAA stations located at longer distances, which range from 234 km to 591 km away from the local station at the inlets. The satisfactory results indicate that the RNN_WL model is able to supplement long-term historical water level data at the coastal inlets based on the available data at remote NOAA stations in the coastal region.     

Eco‐physiological repercussions of dietary arachidonic acid in cell membranes of active tissues of the Gray whale

The radiation of the mammalian land species that became the baleen whales happened about 27–34 Mya. Mammals require omega 6 fatty acids for reproduction. With this long exposure to the omega 3‐rich marine food chain, the Gray whale (Eschrichtius robustus) might be expected to have lost its requirement for omega 6 fatty acids. We report an unexpectedly high content of omega 6 arachidonic acid (ArA) in the Gray whale liver and muscle lipids. This whale migrates 10,000 km from the cold polar, omega 3 oil‐rich food chain to that of the breeding lagoons of the tropical waters. The food web of tropical waters is a source of omega 6 fatty acids, which are hardly present in the cold polar food web. We suggest the reason for this longest of migrations from cold to warm waters is to meet the requirement for omega 6 fatty acids for mammalian reproduction and brain growth. This extreme conservation of omega 6 fatty acids in Gray whale biology has critical implications for mammalian biology and especially for whale conservation.     

Evaluating practical macrophyte control tools on small agricultural waterways in Canterbury,New Zealand

Excessive macrophytes can cause significant problems in agricultural waterways requiring active management. Conventional control techniques can have a range of adverse effects. We investigated several control tools in two experiments: firstly, we tested eight treatments at a small-scale (2?m?×?2?m). We found intensive hand weeding, weed mat and herbicide spraying to be effective treatments, reducing macrophyte cover to <5%. Hand weeding and weed mat immediately reduced cover, while dieback from herbicide took two months. Weed mat was a novel and effective control mechanism along stream banks. Secondly, we tested the impact of shading on macrophyte growth. Macrophyte growth was enhanced under partially shaded conditions, but with 80% effective shading over the entire channel, cover was reduced to 17%. Once treatments ceased, macrophytes grew back within 3–5 months. Long-term, control methods will require combinations of tools but will need to include optimal shading for the target species.     

Selected contributions from the 11th Gas in Marine Sediments International Conference of September 2012, Nice: an introduction

This Introduction presents an overview of selected contributions from the 11th Gas in Marine Sediments International Conference held on the 4–7 September 2012 in Nice, France, and published in this special issue of Geo-Marine Letters under the guest editorship of Catherine Pierre, Patrice Imbert and Jean Mascle. These cover fluid seepage dynamics at widely varying spatiotemporal scales in a giant buried caldera of the Caspian Sea, mud volcanoes and pockmarks in the Mediterranean and adjoining Gulf of Cadiz, as well as Lake Baikal, pockmarks of shallower waters along the Atlantic French coast and in Baltic Sea lagoons, deepwater pockmarks and cold seeps on the Norwegian margin and the Hikurangi Margin of New Zealand, asphalt seepage sites offshore southern California, and the tectonically controlled southern Chile forearc. We look forward to meeting all again at the 12th Gas in Marine Sediments conference scheduled for 1–6 September 2014 in Taipei, Taiwan.     

First insights into the structure and environmental setting of cold-seep communities in the Marmara Sea

A brackish-water cold seep on the North Anatolian Fault (NAF) in the Marmara Sea was investigated with the Nautile submersible during the MarNaut cruise in 2007. This active zone has already been surveyed and revealed evidence of active seeping on the seafloor, such as bubble emissions, patches of reduced sediments, microbial mats and authigenic carbonate crusts. MarNaut was the first opportunity to sample benthic communities in the three most common microhabitats (bioturbated and reduced sediments, carbonate crust) and to examine their relationships with environmental conditions. To do so, faunal communities were sampled and chemical measurements were taken close to the organisms. According to diversity indices, the bioturbated microhabitat exhibited the highest taxonomic diversity and evenness despite a lower number of samples. Conversely, the reduced sediment microhabitat exhibited the lowest taxonomic diversity and evenness. The carbonate crust microhabitat was intermediate although it had the highest biomass. Multivariate analyses showed that (1) fauna were relatively similar within a single microhabitat; (2) faunal community structure varied greatly between the different microhabitats; (3) there was a link between faunal distribution and the type of substratum; and (4) chemical gradients (i.e. methane, oxygen and probably sulphides) may influence faunal distribution. The estimated fluid flow velocity (0.4–0.8 m/yr) confirmed the presence of fluid emission and provided evidence of seawater convection in the two soft-sediment microhabitats. Our results suggest that the reduced sediments may represent a harsher environment with high upward fluid flow, which restrains seawater from penetrating the sediments and inhibits sulphide production, whereas bioturbated sediments can be viewed as a bio-irrigated system with sulphide production occurring at greater depths. Therefore, the environmental conditions in reduced sediments appear to prevent the colonization of symbiont-bearing fauna, such as vesicomyid bivalves, which are more often found in bioturbated sediments. Fluid flow appears to control sulphide availability, which in turn influences the horizontal and vertical distribution patterns of fauna at small spatial scales as observed at other seep sites.     

Effects of salinity on sublethal toxicity of atrazine to mummichog (Fundulus heteroclitus) larvae

In coastal marshes, fish larvae may be exposed simultaneously to extreme salinities and to atrazine, a widely used herbicide. To assess the effects of salinity on the toxicity of atrazine, newly-hatched mummichog (Fundulus heteroclitus) were exposed to atrazine (0, 5, 50 and 500 microg/L) at three salinities (3, 15 and 35PSU). Whole body cortisol was measured after 24 h. Body length, condition factor, whole body proteins, lipids, residual masses and water contents were assessed after 96 h. Significants effects were found for both condition factor and water content. Condition factors were lower at salinity 3 and 35 compared to near isoosmotic salinity, 15PSU. In addition, atrazine decreased condition factor at 500 microg/L. Reduction in condition was likely due to retardation in axial growth since body length, percentages of proteins or lipids were not affected. In the absence of atrazine, salinity had no effect on the prevalence of dehydrated (81% water) or hyperhydrated (85% water) larvae. In larvae exposed to atrazine, the prevalence of hyperhydrated larvae increased at 3PSU and 5 microg/L atrazine and that of dehydrated larvae increased at 15 and 35PSU and 5 microg/L atrazine. Severity of dehydratation increased with atrazine concentration at salinity 35PSU. Thus, a short-term exposure to environmentally realistic concentrations of atrazine affects osmotic control in mummichog larvae with possible effects on buoyancy, survival and recruitment.     

Seasonal variation in the molt status of an oceanic copepod

The timing of diapause, or suppressed development, in the dominant California Current copepod Calanus pacificus was examined in two ways. Diapause timing was inferred from changes in the abundance of deep, diapausing C. pacificus over a full year at a station off southern California, USA. Jaw phase and ecdysteroid content, indicators of molt cycle status in C. pacificus, were also examined to determine if shifts toward early molt phases, as are observed in diapausing Calanus, were also found among surface C. pacificus during periods when the abundance of deep, diapausing C. pacificus was increasing. The abundance of diapausing C. pacificus in deep water increased from June to mid-October, then declined from October to March. The percentage of surface-living C. pacificus CV with postmolt jaws, the earliest jaw phase, was significantly higher from June to mid-October than at other times. The ecdysteroid content of surface-living C. pacificus CV was also significantly lower during June to mid-October than during late October to May. Both of these changes indicate a shift to earlier molt phases in surface-living C. pacificus CV during periods of onset of diapause. However, the molt status of surface CV was variable from June to mid-October, suggesting that preparation for diapause was spatially or temporally heterogeneous. Hypotheses about environmental cues that induce diapause were evaluated, although the effect of cues on possibly sensitive stages could not be considered. The abundance of diapausing C. pacificus increased during a period of warm upper water column temperature and generally high and declining photoperiod; however, evaluation of the cues inducing diapause was inconclusive.     

Predicting seasonal ocean variability around New Zealand using a coupled ocean-atmosphere model

We present a first assessment of the Sea Surface Temperature (SST) and 300m Heat Content (HC) ensemble mean skill of the Australian Community Climate and Earth-System Simulator-Seasonal v1.0 (ACCESS-S1) around New Zealand on seasonal timescales, using a set of retrospective ensemble forecasts for 1990-2012. This was verified against Reynolds AVHRR analysis and Bluelink ReANalysis 3.5 (BRAN3.5). For inshore areas with depth <300m, the model shows skill forecasting for summer at a lead time of 0 months, with 66% and 65% of model grid cells having correlation coefficients exceeding 0.6 for SST and 300m HC respectively. Regions of lower skill seem to be associated with the model representation of the complex and variable frontal systems around New Zealand, and an overly-strong response to the El Niño Southern-Oscillation (ENSO). Nevertheless, the skill of ACCESS-S1 around New Zealand suggests there is potential for the development of useful seasonal forecast products for the region.     

Paleolimnological investigations of anthropogenic environmental change in Lake Tanganyika: I. An introduction to the project

We investigated paleolimnological records from a series of river deltas around the northeastern rim of Lake Tanganyika, East Africa (Tanzania and Burundi) in order to understand the history of anthropogenic activity in the lakes catchment over the last several centuries, and to determine the impact of these activities on the biodiversity of littoral and sublittoral lake communities. Sediment pollution caused by increased rates of soil erosion in deforested watersheds has caused significant changes in aquatic communities along much of the lakes shoreline. We analyzed the effects of sediment discharge on biodiversity around six deltas or delta complexes on the east coast of Lake Tanganyika: the Lubulungu River delta, Kabesi River delta, Nyasanga/Kahama River deltas, and Mwamgongo River delta in Tanzania; and the Nyamuseni River delta and Karonge/Kirasa River deltas in Burundi. Collectively, these deltas and their associated rivers were chosen to represent a spectrum of drainage-basin sizes and disturbance levels. By comparing deltas that are similar in watershed attributes (other than disturbance levels), our goal was to explore a series of historical experiments at the watershed scale, with which we could more clearly evaluate hypotheses of land use or other effects on nearshore ecosystems. Here we discuss these deltas, their geologic and physiographic characteristics, and the field procedures used for coring and sampling the deltas, and various indicators of anthropogenic impact.