Closely related thyasirid bivalves associate with multiple symbiont phylotypes

Species of thyasirid bivalves are considered to be representative of early stages of chemosymbiosis, given that bacterial symbionts occur outside gill epithelial cells, vary among species in their abundance and nutritional importance, and are environmentally acquired. For these reasons, assessing the extent of host–symbiont specificity in thyasirids could provide valuable information on the evolution of chemosymbiosis. We show that individuals of two closely related and sympatric Thyasira cf. gouldi operational taxonomic units collected from three sites in a fjord in Newfoundland, Canada, associate with one of three distinct, closely related symbiont phylotypes. While associations show some site‐specificity, there is flexibility in host–symbiont pairings within the fjord, further supporting an early and relatively unspecific stage of chemosymbiosis in this family. Morphologic differences observed both within and among symbiont phylotypes suggest physiologic variation, possibly induced by small‐scale differences in sedimentary conditions.     

Performance of pile-restrained flexible floating breakwaters

The overall performance of pile-restrained flexible floating breakwaters is investigated under the action of linear monochromatic incident waves in the frequency domain. The aforementioned floating breakwaters undergo only vertical structural deflections along their length and are held in place by means of vertical piles. The total number of degrees of freedom equals the six conventional body modes, when the breakwater moves as a rigid body, plus the extra bending modes. These bending modes are introduced to represent the structural deflections of the floating breakwater and are described by the Bernoulli–Euler flexible beam equation. The number of bending modes introduced is determined through an appropriate iterative procedure. The hydrostatic coefficients corresponding to the bending modes are also derived. The numerical analysis of the flexible floating breakwaters is based on a three-dimensional hydrodynamic formulation of the floating body. A parametric study is carried out for a wide range of structural stiffness parameters and wave headings, to investigate their effect on the performance of flexible floating breakwaters. Moreover, this performance is compared with that of the corresponding pile-restrained rigid floating breakwater. Results indicated that the degree of structural stiffness and the wave heading strongly affect the performance of flexible floating breakwaters. The existence of an “optimum” value of structural stiffness is demonstrated for the entire wave frequency range.     

Positive feedback fishery: Population consequences of ‘crab-tiling’ on the green crab Carcinus maenas

Collection of marine invertebrates for use as fishing bait is a substantial activity in many parts of the world, often with unknown ecological consequences. As new fisheries develop, it is critical for environmental managers to have high quality ecological information regarding the potential impacts, in order to develop sound management strategies. Crab-tiling is a largely unregulated and un-researched fishery, which operates commercially in the south-west UK. The target species is the green crab Carcinus maenas. Those crabs which are pre-ecdysis and have a carapace width greater than 40 mm are collected to be sold to recreational anglers as bait. Collection involves laying artificial structures on intertidal sandflats and mudflats in estuaries. Crabs use these structures as refugia and are collected during low tide. However, the effect that this fishery has on populations of C. maenas is not known. The impact of crab-tiling on C. maenas population structure was determined by sampling crabs from tiled estuaries and non-tiled estuaries using baited drop-nets. A spatially and temporarily replicated, balanced design was used to compare crab abundance, sizes and sex ratios between estuaries. Typically, fisheries are associated with a reduction in the abundance of the target species. Crab-tiling, however, significantly increased C. maenas abundance. This was thought to be a result of the extra habitat in tiled estuaries, which probably provides protection from natural predators, such as birds and fish. Although crabs were more abundant in tiled estuaries than non-tiled estuaries, the overall percentage of reproductively active crabs in non-tiled estuaries was greater than in tiled estuaries. As with most exploited fisheries stocks, crabs in exploited (tiled) estuaries tended to be smaller, with a modal carapace width of 20–29 mm rather than 30–39 mm in non-tiled estuaries. The sex ratio of crabs however; was not significantly different between tiled and non-tiled estuaries. These results illustrate the potential to manage fished populations using habitat provision to mitigate the effects of fishing pressure.     

Floating and fixed artificial habitats: Spatial and temporal patterns of benthic communities in a coral reef environment

While natural marine habitats with motion capabilities, e.g., kelps and seaweeds, have been studied alongside their associated fouling communities, little is known of the effect of motion on the communities of floating artificial habitats such as buoys, rafts, and pontoons, particularly in tropical systems. Hydrodynamic features greatly differ between floating and fixed artificial substrata, which in turn affect the structure of their associated communities. This study tested the hypothesis that floating and fixed artificial installations in a tropical reef system (Eilat, Red Sea) would support different benthic communities throughout space and time. Specifically, we examined differences in communities recruited onto settlement plates between floating and fixed installations deployed at three different sites, along a two-year monitoring period. The three sites exhibited distinct differences in species assemblages between the monitoring dates (6, 12, 18 and 24 months post deployment), mainly between the first and the last two dates. The average level of dissimilarity between floating and fixed installations increased over time at all sites. Over 50% of the dissimilarity between the floating and fixed installations resulted from five taxonomic groups i.e., bryozoans, bivalves, barnacles, sponges, including the amount of bare space on the settlement plates. The contribution of these groups to the dissimilarity changed both temporally within each site, and spatially among sites. The observed differences were related to the hydrodynamic characteristics of floating and fixed habitats, interacting with biotic features such as predation, successional processes and seasonality; and abiotic features including small-scale spatial changes, light, and position in the water column.     

Climate change and coral reef bleaching: An ecological assessment of long-term impacts,recovery trends and future outlook

Since the early 1980s, episodes of coral reef bleaching and mortality, due primarily to climate-induced ocean warming, have occurred almost annually in one or more of the world's tropical or subtropical seas. Bleaching is episodic, with the most severe events typically accompanying coupled ocean–atmosphere phenomena, such as the El Niño-Southern Oscillation (ENSO), which result in sustained regional elevations of ocean temperature. Using this extended dataset (25+ years), we review the short- and long-term ecological impacts of coral bleaching on reef ecosystems, and quantitatively synthesize recovery data worldwide. Bleaching episodes have resulted in catastrophic loss of coral cover in some locations, and have changed coral community structure in many others, with a potentially critical influence on the maintenance of biodiversity in the marine tropics. Bleaching has also set the stage for other declines in reef health, such as increases in coral diseases, the breakdown of reef framework by bioeroders, and the loss of critical habitat for associated reef fishes and other biota. Secondary ecological effects, such as the concentration of predators on remnant surviving coral populations, have also accelerated the pace of decline in some areas. Although bleaching severity and recovery have been variable across all spatial scales, some reefs have experienced relatively rapid recovery from severe bleaching impacts. There has been a significant overall recovery of coral cover in the Indian Ocean, where many reefs were devastated by a single large bleaching event in 1998. In contrast, coral cover on western Atlantic reefs has generally continued to decline in response to multiple smaller bleaching events and a diverse set of chronic secondary stressors. No clear trends are apparent in the eastern Pacific, the central-southern-western Pacific or the Arabian Gulf, where some reefs are recovering and others are not. The majority of survivors and new recruits on regenerating and recovering coral reefs have originated from broadcast spawning taxa with a potential for asexual growth, relatively long distance dispersal, successful settlement, rapid growth and a capacity for framework construction. Whether or not affected reefs can continue to function as before will depend on: (1) how much coral cover is lost, and which species are locally extirpated; (2) the ability of remnant and recovering coral communities to adapt or acclimatize to higher temperatures and other climatic factors such as reductions in aragonite saturation state; (3) the changing balance between reef accumulation and bioerosion; and (4) our ability to maintain ecosystem resilience by restoring healthy levels of herbivory, macroalgal cover, and coral recruitment. Bleaching disturbances are likely to become a chronic stress in many reef areas in the coming decades, and coral communities, if they cannot recover quickly enough, are likely to be reduced to their most hardy or adaptable constituents. Some degraded reefs may already be approaching this ecological asymptote, although to date there have not been any global extinctions of individual coral species as a result of bleaching events. Since human populations inhabiting tropical coastal areas derive great value from coral reefs, the degradation of these ecosystems as a result of coral bleaching and its associated impacts is of considerable societal, as well as biological concern. Coral reef conservation strategies now recognize climate change as a principal threat, and are engaged in efforts to allocate conservation activity according to geographic-, taxonomic-, and habitat-specific priorities to maximize coral reef survival. Efforts to forecast and monitor bleaching, involving both remote sensed observations and coupled ocean–atmosphere climate models, are also underway. In addition to these efforts, attempts to minimize and mitigate bleaching impacts on reefs are immediately required. If significant reductions in greenhouse gas emissions can be achieved within the next two to three decades, maximizing coral survivorship during this time may be critical to ensuring healthy reefs can recover in the long term.     

44 years hindcast of sea level in the Atlantic Coast of Europe

The sea level of Northeast Atlantic Ocean is calculated for the period between 1958 and 2001 using a state-of-the-art barotropic model with a grid size of 10′ × 15′ (long × lat). The model includes astronomic effects, considering seven components of the tide, and the meteorological effects of wind and atmospheric pressure, allowing obtaining the astronomic tide, the atmospheric residuals and the non-linear addition of both components of sea level.     

Different approaches to model error formulation in 4D-Var: a study with high-resolution advection schemes

All numerical models are imperfect. Weak constraint variational data assimilation ( VDA ), which provides a treatment of the modelling errors, is studied; building on the approach of Vidard et al. (Tellus, 56 A, pp. 177–188, 2004). The evolution of model error ( ME ) is modelled using ordinary differential equations, which involve a scalar parameter. These approaches were tested using different high-resolution advection schemes. The first set of experiments were constructed to see if it is possible to account for (numerical) discretization error within such a framework. In other set of experiments, a systematic source of modelling error was introduced by deliberately specifying an incorrect value for the Coriolis parameter in the model. Results with observational state at half of the model state resolution, are also presented. We also discuss a method of estimating the scalar parameter in the ME through VDA . In all cases, the inclusion of ME provides reduction in forecasting errors. Also, our experiments indicate that different settings of the model (e.g. using different high-resolution advection schemes) would need different ME formulation. Results presented in this paper could be used to formulate sophisticated ME forms to account for systematic errors in higher dimensional models with complex advection schemes.     

Changes in climatic characteristics of Northern Hemisphere extratropical land in the 21st century: Assessments with the IAP RAS climate model

Assessments of future changes in the climate of Northern Hemisphere extratropical land regions have been made with the IAP RAS climate model (CM) of intermediate complexity (which includes a detailed scheme of thermo- and hydrophysical soil processes) under prescribed greenhouse and sulfate anthropogenic forcing from observational data for the 19th and 20th centuries and from the SRES B1, A1B, and A2 scenarios for the 21st century. The annual mean warming of the extratropical land surface has been found to reach 2–5 K (3–10 K) by the middle (end) of the 21st century relative to 1961–1990, depending on the anthropogenic forcing scenario, with larger values in North America than in Europe. Winter warming is greater than summer warming. This is expressed in a decrease of 1–4 K (or more) in the amplitude of the annual harmonic of soil-surface temperature in the middle and high latitudes of Eurasia and North America. The total area extent of perennially frozen ground S _p in the IAP RAS CM changes only slightly until the late 20th century, reaching about 21 million km², and then decreases to 11–12 million km² in 2036–2065 and 4–8 million km² in 2071–2100. In the late 21st century, near-surface permafrost is expected to remain only in Tibet and in central and eastern Siberia. In these regions, depths of seasonal thaw exceed 1 m (2 m) under the SRES B1 (A1B or A2) scenario. The total land area with seasonal thaw or cooling is expected to decrease from the current value of 54–55 million km² to 38–42 in the late 21st century. The area of Northern Hemisphere snow cover in February is also reduced from the current value of 45–49 million km² to 31–37 million km². For the basins of major rivers in the extratropical latitudes of the Northern Hemisphere, runoff is expected to increase in central and eastern Siberia. In European Russia and in southern Europe, runoff is projected to decrease. In western Siberia (the Ob watershed), runoff would increase under the SRES A1B and A2 scenarios until the 2050s–2070s, then it would decrease to values close to present-day ones; under the anthropogenic forcing scenario SRES B1, the increase in runoff will continue up to the late 21st century. Total runoff from Eurasian rivers into the Arctic Ocean in the IAP RAS CM in the 21st century will increase by 8–9% depending on the scenario. Runoff from the North American rivers into the Arctic Ocean has not changed much throughout numerical experiments with the IAP RAS CM.