Open-system chemical behavior in deep Wilcox Group mudstones,Texas Gulf Coast,USA

Wilcox Group mudstones have been mechanically and geochemically transformed over a temperature range of 20–200 °C. Our research controlled for provenance and age by sampling from five wells, parallel to the paleodepositional axis, all within the Houston delta system. Across the sampled depths, mudstone porosity has been reduced from ∼25 to <10% and bulk mineralogical change as documented by quantitative X-ray diffraction includes decreases in quartz, K-feldspar and kaolinite content whereas illite + illite − smectite, chlorite, and plagioclase increase. These mineral transformations transfer elements at a scale of less than 1 mm from one mineralogical form to another, however, X-ray fluorescence data suggest that among major elements only Al₂O₃ and TiO₂ are fully conserved within the system (trace-element ZrO₂ is also conserved). K₂O has been added to and SiO₂ released from the Wilcox Group mudstones. Cathodoluminescence and secondary electron imaging did not find this SiO₂ locally precipitated. We, therefore, document an open-system geochemical behavior.     

Leachable particulate iron in the Columbia River,estuary, and near-field plume

This study examines the distribution of leachable particulate iron (Fe) in the Columbia River, estuary, and near-field plume. Surface samples were collected during late spring and summer of 2004–2006 as part of four River Influence on Shelf Ecosystems (RISE) cruises. Tidal amplitude and river flow are the primary factors influencing the estuary leachable particulate Fe concentrations, with greater values during high flow and/or spring tides. Near the mouth of the estuary, leachable particulate Fe [defined as the particulate Fe solubilized with a 25% acetic acid (pH 2) leach containing a weak reducing agent to reduce Fe oxyhydroxides and a short heating step to access intracellular Fe] averaged 770 nM during either spring tide or high flow, compared to 320 nM during neap tide, low flow conditions. In the near-field Columbia River plume, elevated leachable particulate Fe concentrations occur during spring tides and/or higher river flow, with resuspended shelf sediment as an additional source to the plume during periods of coastal upwelling and spring tides. Near-field plume concentrations of leachable particulate Fe (at a salinity of 20) averaged 660 nM during either spring tide or high flow, compared to 300 nM during neap tide, low flow conditions. Regardless of tidal amplitude and river flow, leachable particulate Fe concentrations in both the river/estuary and near-field plume are consistently one to two orders of magnitude greater than dissolved Fe concentrations. The Columbia River is an important source of reactive Fe to the productive coastal waters off Oregon and Washington, and leachable particulate Fe is available for solubilization following biological drawdown of the dissolved phase. Elevated leachable Fe concentrations allow coastal waters influenced by the Columbia River plume to remain Fe-replete and support phytoplankton production during the spring and summer seasons.     

Assessment of carbon- and fluorescence-based primary productivity in Ariake Bay,southwestern Japan

A comparative account of primary productivity (PP), in the characteristically turbid and highly dynamic waters of Ariake Bay, measured by ¹³C uptake and fast repetition rate fluorometer (FRRF) was conducted to ensure compatibility between the two methods. Estimates from both methods depicted strong linearity for both short-term (r² > 0.90) and daily (r² = 0.42–0.93) measurements, except in the near-surface (∼0 m) layer. ¹³C-based short-term (1 h; in situ) PP estimates showed similar magnitudes and trend with the instantaneous PP measured by FRRF concurrently. Whereas, unlike short-term measurements, the daily PP estimates from both methods showed large difference, with FRRF-based time integrated daily PP resulting in 1.09–1.82 times higher than the carbon-based daily (24 h; simulated in situ) PP. This difference between daily PP estimates was mainly due to: (1) the temporal variation of water column chlorophyll a (Chl a) because of frequent moving of water mass, and (2) the dissimilarity in ambient light field conditions between the two methods. Results revealed that considering the above two environmental factors invariable over a daylength, fairly close approximation of daily PP, compared to ¹³C-based daily PP, could be obtained from FRRF. Hence, FRRF-based daily PP can be considered as more realistic in this highly dynamic water body like Ariake Bay where water column parameters are subjected to strong temporal variation. The relationship between Chl a-specific photosynthetic rate (P^B) and the corresponding photosynthetically active radiation (PAR) in the water column (PAR–P^B relationship) was found to be linear for FRRF and curvilinear for ¹³C-based measurements in the near-surface layer, for the same intensities of incident PAR, and this is thought to be the primary basis for the higher difference in PP estimates at the near-surface layer. Considering the minor variations in FRRF-based time series of PAR–P^B relationships, a combined and/or instantaneous PAR–P^B relationship in combination with incubation Chl a and light field condition was used to obtain fairly close estimates of daily water column integrated PP from FRRF.     

Effect of atmospheric CO2 and solar activity on wind regime and water column stability in the major global upwelling areas

It is not clear whether global warming will favour or reduce global ocean phytoplankton productivity in coastal areas. Moreover, the relative contributions made by natural and/or anthropogenic factors to possible changes in phytoplankton productivity are not clear. As the relationship between primary production and alongshore wind forcing is well established for the Eastern Boundary Current (EBC) ecosystems, our aim is to determine whether the changes experienced over the last five decades (1958–2007) in atmospheric CO₂ and solar activity have been able to affect the wind regime and water column stability in the most biologically productive upwelling areas of California, Canary, Humboldt and Benguela. We approached the work by statistically studying the effect of solar activity and atmospheric CO₂ on surface alongshore wind stress and on water column stability. There was an increasing trend in wind stress and water column stability in all the upwelling areas over the period studied (with the single exception of stability in the California EBC system). The analysis of detrended series evidenced significant relationships between atmospheric CO₂ concentration and wind stress and water column stability in the coastal upwelling areas investigated. In addition, wind stress and stability data were found to be consistent, with negative linear relationships between wind stress and CO₂ in most of the sites in the Benguela, Canary and Humboldt regions associated, as expected, to positive relationships when water column stability is used as regressand. The results of the present study suggest that greenhouse gas forcing, independent of its well known general increasing trend, was able to decrease wind stress intensity and increase water column stability for the period 1958 to present in most of the sites of the four Eastern Boundary Ecosystems studied, with the one exception of the California region. Conversely, the impact of solar activity appeared to be quite low compared to the greenhouse gas forcing.     

LMWOA (low molecular weight organic acid) exudation by salt marsh plants: Natural variation and response to Cu contamination

This work aimed to evaluate, in vitro, the capability of roots of two salt marsh plants to release low molecular weight organic acids (LMWOAs) and to ascertain whether Cu contamination would stimulate or not organic acids exudation. The sea rush Juncus maritimus and the sea-club rush Scirpus maritimus, both from the lower Douro river estuary (NW Portugal), were used. Plants were collected seasonally, four times a year in 2004, during low tide. After sampling, plant roots were washed for removal of adherent particles and immersed for 2 h in a solution that matched salinity (3) and pH (7.5) of the pore water from the same location to obtain plant exudates. In one of the seasons, similar experiments were carried out but spiking the solution with different amounts of Cu in order to embrace the range between 0 and 1600 nM. In the final solutions as well as in sediment pore water LMWOAs were determined by high performance liquid chromatography. Plants were able to release, in a short period of time, relatively high amounts of LMWOAs (oxalate, citrate, malate, malonate, and succinate). In the sediment pore water oxalate, succinate and acetate were also detected. Therefore, plant roots probably contributed to the presence of some of these organic compounds in pore water. Exudation differed between the plant species and also showed some seasonally variation, particularly for S. maritimus. The release of oxalate by J. maritimus increased with Cu increase in the media. However, exudation of the other LMWOAs did not seem to be stimulated by Cu contamination in the media. This fact is compatible with the existence of alternative internal mechanisms for Cu detoxification, as denoted by the fact that in media contaminated with Cu both plant species accumulated relatively high amounts (29–83%) of the initially dissolved Cu. This study expands our knowledge on the contribution of globally dominant salt marsh plants to the release of LMWOAs into the environment.     

Physical determinants of intertidal communities on dissipative beaches: Implications of sea-level rise

Sea-level rise is likely to cause significant changes in the morphodynamic state of beaches in the higher latitudes, resulting in steeper beaches with larger particle sizes. These physical changes have implications for beach invertebrate communities, which are determined largely by sediment particle size, and hence for ecosystem function. Previous studies have explored the relationships between invertebrate communities and environmental variables such as particle size, beach slope and exposure to wave action, and often these physical variables can be integrated in various indices of morphodynamic state. Most of these studies incorporated a full range of beach types that included wave-dominated surf beaches, where the wave action is harsh enough to enable reliable estimates of breaker height, a parameter included in several of the indices, and concluded that more dissipative beaches with gentler slopes and finer particle sizes often support a higher number of species and greater abundance than more reflective beaches. Whether these predictions remain valid for less wave-dominated beaches, where breaker height is more difficult to determine, is uncertain. In the present study, the abundance of meio- and macrofauna was quantified across a range of beaches in the UK, which are generally towards the lower energy end of the morphodynamic gradient, and their relationships with beach physical properties explored. No significant relationships were found between abundance and the standard morphodynamic indices, but significant relationships were found for both macro- and meiofaunal abundance when these indices were combined with an exposure index (derived from velocity, direction, duration and the effective fetch). All the relationships identified between abundance and combined morphodynamic indices indicated a higher abundance of both macro- and meiofauna on the more dissipative beaches. The reverse was however found for species richness. If predictions that accelerated sea-level rise will move beaches towards a more reflective morphodynamic state are correct, this could lead to declines in the abundance of meio- and macrofauna, with potential adverse consequences for ecosystem functioning.     

Ocean acidification: Separating evidence from judgment – A reply to Dupont et al.

Recently ocean acidification as a major threat for marine species has moved from a consensus statement into a much discussed and even challenged conception. A simple meta-analysis of Hendriks et al. (2010) showed that based on results of pooled experimental evidence, marine biota may turn out to be more resistant than hitherto believed. Dupont et al. (in press) indicate the importance of evaluating the most vulnerable stages in the life cycle of organisms instead of only adult stages. Here we evaluate additional material, composed of experimental evidence of the effect of ocean acidification on marine organisms during adult, larval, and juvenile stages, and show that the observed effects are within the range predicted by Hendriks et al. (2010). Species-specific differences and a wide variance in the reaction of organisms might obscure patterns of differences between life stages. Future research should be aimed to clarify underlying mechanisms to define the effect ocean acidification will have on marine biodiversity. Conveying scientific evidence along with an open acknowledgment of uncertainties to help separate evidence from judgment should not harm the need to act to mitigate ocean acidification and should pave the road for robust progress in our understanding of how ocean acidification impacts biota of the ocean.     

Importance of wave-induced bed liquefaction in the fine sediment budget of Cleveland Bay,Great Barrier Reef

Data from a three-year long field study of fine sediment dynamics in Cleveland Bay show that wave-induced liquefaction of the fine sediment bed on the seafloor in shallow water was the main process causing bed erosion under small waves during tradewinds, and that shear-induced erosion prevailed during cyclonic conditions. These data were used to verify a model of fine sediment dynamics that calculates sediment resuspension by both excess shear stress and wave-induced liquefaction of the bed. For present land-use conditions, the amount of riverine sediments settling on the bay may exceed by 50–75% the amount of sediment exported from the bay. Sediment is thus accumulating in the bay on an annual basis, which in turn may degrade the fringing coral reefs. For those years when a tropical cyclone impacted the bay there may be a net sediment outflow from the bay. During the dry, tradewind season, fine sediment was progressively winnowed out of the shallow, reefal waters.     

Quantifying 20th century deposition in complex estuarine environment: An example from the Hudson River

Sediment processes in estuaries are controlled by the interaction of factors that include tides, fresh water inputs, bed morphology, sediment supply, and hydrodynamics. The interaction of these factors strongly influences the pattern of sediment deposition. The ability to quantify sediment deposition on a regional scale will improve the understanding of the underlying processes, and provide valuable information for managing estuarine systems. This paper describes our approach for obtaining the deposition pattern and quantifying the amount of 20th century impacted sediments in the Haverstraw Bay section of the Hudson River Estuary. Through the combination of high-resolution seismic data and rapidly acquired geochemical information from numerous sediment cores, we estimate that our study site experiences an average sediment accumulation rate of ∼3 mm/y and that ∼75,000 t/y or ∼10% of the annual total sediment input measured at the Poughkeepsie, NY gauging station (USGS) is stored in this reach of the Hudson River on ∼100 y timescales. A detailed analysis of the depositional pattern indicates that the accumulation rate varies considerably throughout the study area ranging from non-depositional to >8 mm/y. Our data also clearly indicate that the dredged channel in Haverstraw Bay is currently the main focus of deposition in this area.     

Sedimentary organic matter distributions,burrowing activity,and biogeochemical cycling: Natural patterns and experimental artifacts

The coupling between biogenic reworking activity and reactive organic matter patterns within deposits is poorly understood and often ignored. In this study, we examined how common experimental treatments of sediment affect the burrowing behavior of the polychaete Nephtys incisa and how these effects may interact with reactive organic matter distributions to alter diagenetic transport – reaction balances. Sediment and animals were recovered from a subtidal site in central Long Island Sound, USA. The upper 15 cm of the sediment was sectioned into sub-intervals, and each interval separately sieved and homogenized. Three initial distributions of sediment and organic substrate reactivity were setup in a series of microcosms: (1) a reconstituted natural pattern with surface-derived sediment overlying sediment obtained from progressively deeper material to a depth of 15 cm (Natural); (2) a 15 cm thick sediment layer composed only of surface-derived sediment (Rich); and (3) a 15 cm thick layer composed of uniformally mixed sediment from the original 15 cm sediment profile (Averaged). The two last treatments are comparable to that used in microcosms in many previous studies of bioturbation and interspecific functional interaction experiments. Sediment grain size distributions were 97.5% silt-clay and showed no depth dependent patterns. Sediment porosity gradients were slightly altered by the treatments. Nepthys were reintroduced and aquariums were X-rayed regularly over 5 months to visualize and quantify spatial and temporal dynamics of burrows. The burrowing behaviour of adult populations having similar total biovolume, biomass, abundance, and individual sizes differed substantially as a function of treatment. Burrows in sediment with natural property gradients were much shallower and less dense than those in microcosms with altered gradients. The burrow volume/biovolume ratio was also lower in the substrate with natural organic reactivity gradients. Variation in food resources or in sediment mechanical properties associated with treatments, the latter in part coupled to remineralization processes such as exopolymer production, may explain the burrowing responses. In addition to demonstrating how species may respond to physical sedimentation events (substrate homogenization) and patterns of reactive organic matter redistribution, these experiments suggest that infaunal species interactions in microcosms, including the absolute and relative fluxes of remineralized solutes, may be subject to artifacts depending on exactly how sediments are introduced experimentally. Nonlocal transport and cylinder microenvironment transport – reaction models readily demonstrate how the multiple interactions between burrowing patterns and remineralization rate distributions can alter relative flux balances, decomposition pathways, and time to steady state.