MoisturEC: A New R Program for Moisture Content Estimation from Electrical Conductivity Data

Noninvasive geophysical estimation of soil moisture has potential to improve understanding of flow in the unsaturated zone for problems involving agricultural management, aquifer recharge, and optimization of landfill design and operations. In principle, several geophysical techniques (e.g., electrical resistivity, electromagnetic induction, and nuclear magnetic resonance) offer insight into soil moisture, but data‐analysis tools are needed to “translate” geophysical results into estimates of soil moisture, consistent with (1) the uncertainty of this translation and (2) direct measurements of moisture. Although geostatistical frameworks exist for this purpose, straightforward and user‐friendly tools are required to fully capitalize on the potential of geophysical information for soil‐moisture estimation. Here, we present MoisturEC, a simple R program with a graphical user interface to convert measurements or images of electrical conductivity (EC) to soil moisture. Input includes EC values, point moisture estimates, and definition of either Archie parameters (based on experimental or literature values) or empirical data of moisture vs. EC. The program produces two‐ and three‐dimensional images of moisture based on available EC and direct measurements of moisture, interpolating between measurement locations using a Tikhonov regularization approach.     

The Dual-Domain Porosity Apparatus: Characterizing Dual Porosity at the Sediment/Water Interface

The characterization of pore-space connectivity in porous media at the sediment/water interface is critical in understanding contaminant transport and reactive biogeochemical processes in zones of groundwater and surface-water exchange. Previous in situ studies of dual-domain (i.e., mobile/less-mobile porosity) systems have been limited to solute tracer injections at scales of meters to hundreds of meters and subsequent numerical model parameterization using fluid concentration histories. Pairing fine-scale (e.g., sub-meter) geoelectrical measurements with fluid tracer data over time alleviates dependence on flowpath-scale experiments, enabling spatially targeted characterization of shallow sediment/water interface media where biogeochemical reactivity is often high. The Dual-Domain Porosity Apparatus is a field-tested device capable of variable rate-controlled downward flow experiments. The Dual-Domain Porosity Apparatus facilitates inference of dual-domain parameters, i.e., mobile/less-mobile exchange rate coefficient and the ratio of less mobile to mobile porosity. The Dual-Domain Porosity Apparatus experimental procedure uses water electrical conductivity as a conservative tracer of differential loading and flushing of pore spaces within the region of measurement. Variable injection rates permit the direct quantification of the flow-dependence of dual-domain parameters, which has been theorized for decades but remains challenging to assess using existing experimental methodologies.     

The fragmentation of expanding shells – I. Limitations of the thin-shell approximation

We investigate the gravitational fragmentation of expanding shells in the context of the linear thin-shell analysis. We make use of two very different numerical schemes; the flash adaptive mesh refinement code and a version of the Benz smoothed particle hydrodynamics code. We find that the agreement between the two codes is excellent. We use our numerical results to test the thin-shell approximation and we find that the external pressure applied to the shell has a strong effect on the fragmentation process. In cases where shells are not pressure-confined, the shells thicken as they expand and hydrodynamic flows perpendicular to the plane of the shell suppress fragmentation at short wavelengths. If the shells are pressure-confined internally and externally, so that their thickness remains approximately constant during their expansion, the agreement with the analytical solution is better.     

Natural Attenuation of Perchlorate in Denitrified Groundwater

Monitoring of a well‐defined septic system groundwater plume and groundwater discharging to two urban streams located in southern Ontario, Canada, provided evidence of natural attenuation of background low level (ng/L) perchlorate (ClO₄^?) under denitrifying conditions in the field. The septic system site at Long Point contains ClO₄^? from a mix of waste water, atmospheric deposition, and periodic use of fireworks, while the nitrate plume indicates active denitrification. Plume nitrate (NO₃^?‐N) concentrations of up to 103 mg/L declined with depth and downgradient of the tile bed due to denitrification and anammox activity, and the plume was almost completely denitrified beyond 35 m from the tile bed. The ClO₄^? natural attenuation occurs at the site only when NO₃^?‐N concentrations are <0.3 mg/L, after which ClO₄^? concentrations decline abruptly from 187 ± 202 to 11 ± 15 ng/L. A similar pattern between NO₃^?‐N and ClO₄^? was found in groundwater discharging to the two urban streams. These findings suggest that natural attenuation (i.e., biodegradation) of ClO₄^? may be commonplace in denitrified aquifers with appropriate electron donors present, and thus, should be considered as a remediation option for ClO₄^? contaminated groundwater.     

Nitrate dynamics in a rural headwater catchment: measurements and modelling

This study was designed to improve our understanding of, and mechanistically simulate, nitrate (NO₃) dynamics in a steep 9.8 ha rural headwater catchment, including its production in soil and delivery to a stream via surface and subsurface processes. A two‐dimensional modelling approach was evaluated for (1) integrating these processes at a hillslope scale annually and within storms, (2) estimating denitrification, and (3) running virtual experiments to generate insights and hypotheses about using trees in streamside management zones (SMZs) to mitigate NO₃ delivery to streams. Total flow was mathematically separated into quick‐ and slow‐flow components; the latter was routed through the HYDRUS software with a nitrogen module designed for constructed wetlands. Flow was monitored for two years. High surface‐soil NO₃ concentrations started to be delivered to the stream via preferential subsurface flow within two days of the storm commencing. Groundwater NO₃‐N concentrations decreased from 1.0 to less than 0.1 mg l^?1 from up‐slope to down‐slope water tables, respectively, which was attributed to denitrification. Measurements were consistent with the flushing of NO₃ mainly laterally from surface soil during and following each storm. The model accurately accounted for NO₃ turnover, leading to the hypotheses that denitrification was a minor flux (<3 kg N ha^?1) compared to uptake (98^?127 kg N ha^?1), and that SMZ trees would reduce denitrification if they lowered the water table. This research provides an example of the measurement and modelling of NO₃ dynamics at a small‐catchment scale with high spatial and temporal resolution. Copyright © 2013 John Wiley & Sons, Ltd.     

Fitting the integrated spectral energy distributions of galaxies

Fitting the spectral energy distributions (SEDs) of galaxies is an almost universally used technique that has matured significantly in the last decade. Model predictions and fitting procedures have improved significantly over this time, attempting to keep up with the vastly increased volume and quality of available data. We review here the field of SED fitting, describing the modelling of ultraviolet to infrared galaxy SEDs, the creation of multiwavelength data sets, and the methods used to fit model SEDs to observed galaxy data sets. We touch upon the achievements and challenges in the major ingredients of SED fitting, with a special emphasis on describing the interplay between the quality of the available data, the quality of the available models, and the best fitting technique to use in order to obtain a realistic measurement as well as realistic uncertainties. We conclude that SED fitting can be used effectively to derive a range of physical properties of galaxies, such as redshift, stellar masses, star formation rates, dust masses, and metallicities, with care taken not to over-interpret the available data. Yet there still exist many issues such as estimating the age of the oldest stars in a galaxy, finer details of dust properties and dust-star geometry, and the influences of poorly understood, luminous stellar types and phases. The challenge for the coming years will be to improve both the models and the observational data sets to resolve these uncertainties. The present review will be made available on an interactive, moderated web page (), where the community can access and change the text. The intention is to expand the text and keep it up to date over the coming years.     

GhostNet marine debris survey in the Gulf of Alaska--satellite guidance and aircraft observations

Marine debris, particularly debris that is composed of lost or abandoned fishing gear, is recognized as a serious threat to marine life, vessels, and coral reefs. The goal of the GhostNet project is the detection of derelict nets at sea through the use of weather and ocean models, drifting buoys and satellite imagery to locate convergent areas where nets are likely to collect, followed by airborne surveys with trained observers and remote sensing instruments to spot individual derelict nets. These components of GhostNet were first tested together in the field during a 14-day marine debris survey of the Gulf of Alaska in July and August 2003. Model, buoy, and satellite data were used in flight planning. A manned aircraft survey with visible and IR cameras and a LIDAR instrument located debris in the targeted locations, including 102 individual pieces of debris of anthropogenic or terrestrial origin.     

Pilot‐scale field validation of the long electrode electrical resistivity tomography method

A validation experiment, carried out in a scaled field setting, was attempted for the long electrode electrical resistivity tomography method in order to demonstrate the performance of the technique in imaging a simple buried target. The experiment was an approximately 1/17 scale mock‐up of a region encompassing a buried nuclear waste tank on the Hanford site. The target of focus was constructed by manually forming a simulated plume within the vadose zone using a tank waste simulant. The long electrode results were compared to results from conventional point electrodes on the surface and buried within the survey domain. Using a pole‐pole array, both point and long electrode imaging techniques identified the lateral extents of the pre‐formed plume with reasonable fidelity but the long electrode method was handicapped in reconstructing vertical boundaries. The pole‐dipole and dipole‐dipole arrays were also tested with the long electrode method and were shown to have the least favourable target properties, including the position of the reconstructed plume relative to the known plume and the intensity of false positive targets. The poor performance of the pole‐dipole and dipole‐dipole arrays was attributed to an inexhaustive and non‐optimal coverage of data at key electrodes, as well as an increased noise for electrode combinations with high geometric factors. However, when comparing the model resolution matrix among the different acquisition strategies, the pole‐dipole and dipole‐dipole arrays using long electrodes were shown to have significantly higher average and maximum values within the matrix than any pole‐pole array. The model resolution describes how well the inversion model resolves the subsurface. Given the model resolution performance of the pole‐dipole and dipole‐dipole arrays, it may be worth investing in tools to understand the optimum subset of randomly distributed electrode pairs to produce maximum performance from the inversion model.     

Challenges associated with pre-border management of biofouling on oil rigs

The potential for oil rigs to transport diverse, reef-like communities around the globe makes them high risk vectors for the inadvertent spread of non-indigenous species (NIS). This paper describes two case studies where a suite of pre-border management approaches was applied to semi-submersible drilling rigs. In the first case study, a drilling rig was defouled in-water prior to departure from New Zealand to Australia. Risk mitigation measures were successful in reducing biosecurity risks to the recipient region, but they resulted in the unintentional introduction of the non-indigenous brown mussel (Perna perna) to New Zealand when the rig was defouled in-water by divers. In the second case study, lessons learned from this high-profile incursion resulted in a more structured approach to pre-border management, and this serves as a useful template for future rig transfers.     

Mesopause region temperature structure observed by sodium resonance lidar

Mesopause region temperature measurements made with a sodium resonance lidar show two unexpected features: (1) Strong positive temperature gradients are often associated with strong gradients in the sodium concentration and (2) positive temperature gradients are generally much stronger than negative ones. Although the structures we see frequently appear to be associated with gravity waves or tides, the asymmetrical temperature oscillations cannot be explained as the result of simple wave propagation. We suggest that strong positive temperature gradients correspond to regions of high atmospheric stability, where eddy diffusion is inhibited, permitting the build-up of strong gradients in temperature and minor constituent mixing ratio.