Development of two novel CYP-antibodies and their use in a PCB exposure experiment with Mytilus edulis

In an attempt to learn more about the cytochrome P450 (CYP) system of mussels, we used protein databases and alignment software to extract highly conserved CYP sequences. From these alignments synthetic peptides were produced and used for rabbit immunisation, which yielded polyclonal antibodies against the CYP families 2 and 4. The antibodies were evaluated with Western Blot and ELISA assays, using digestive gland microsomal samples from the mussel Mytilus edulis. Western Blots revealed immunoreactions for both antibodies. The anti-CYP2 sequence rendered one major immunopositive protein of ≈49 kDa size, and weak signals for proteins of ≈41 and 56 kDa size. The anti-CYP4 sequence rendered two major bands of ≈56 and 59 kDa size, and also a weak immunoreaction with a protein of ≈43 kDa size. ELISA rendered only weak signals even with a 1:50 dilution of IgG-purified serum. A 10-day exposure to Aroclor 1254 did not appear to affect any of the immunopositive proteins, while total PCBs in soft bodies increased from 14–40 ng/g DW in controls to 373–638 ng/g DW in exposed mussels.     

A new form of generalized Boussinesq equations for varying water depth

A new set of equations of motion for wave propagation in water with varying depth is derived in this study. The equations expressed by the velocity potentials and the wave surface elevations include first-order non-linearity of waves and have the same dispersion characteristic to the extended Boussinesq equations. Compared to the extended Boussinesq equations, the equations have only two unknown scalars and do not contain spatial derivatives with an order higher than 2. The wave equations are solved by a finite element method. Fourth-order predictor–corrector method is applied in the time integration and a damping layer is applied at the open boundary for absorbing the outgoing waves. The model is applied to several examples of wave propagation in variable water depth. The computational results are compared with experimental data and other numerical results available in literature. The comparison demonstrates that the new form of the equations is capable of calculating wave transformation from relative deep water to shallow water.     

Macrobenthic Communities of the Eastern Mediterranean Continental Shelf

Abstract. The results of a year long study in which soft-bottom epibenthic invertebrates were collected by grab, dredge and beam-trawl, along the southern Mediterranean coast of Israel, are described in this paper. The classificatory analysis used for both normal and inverse analyses used two measures of dissimilarity - Canberra metric and Bray-Curtis, and both group-average and nearest-neighbour clustering. The results were displayed as dendrograms. Four site groups and five species groups characterised a total of 58 site samples and 245 species. The prominent species in each of the five species groups are mentioned. The applicability of "community concepts" and the effects of sediment properties on community structure are discussed.     

Towards a more detailed seismic picture of the oceanic crust and mantle

A review is presented of current interpretation techniques in marine refraction seismology with particular emphasis on those features which are most useful in structural studies using ocean bottom seismometers. Travel time analysis techniques are discussed for both refraction and variable angle reflection profiles and are compared with systematic travel time inversion methods. Amplitude and waveform analysis techniques allow a more detailed velocity depth profile to be determined, and are illustrated for both surface and bottom receivers. The study of anisotropy and lateral variations in crustal structure may be usefully combined using delay time function methods but a detailed structural model also requires velocity-depth information. Signal processing techniques which are particularly useful for shear wave and long range propagation studies are also metioned. Structural studies using OBS' should lead to detailed knowledge of the oceanic crust and the P wave velocity distribution in the upper mantle.     

Solution of an unstable axisymmetric Cauchy–Poisson problem of dispersive water waves for a spectrum with compact support

 It has been known that the axisymmetric Cauchy–Poisson problem for dispersive water waves is well posed in the sense of stability. Thereby time evolution solutions of wave propagation depend continuously on initial conditions. However, in this paper, it is demonstrated that the axisymmetric Cauchy–Poisson problem is ill posed in the sense of stability for a certain class of initial conditions, so that the propagating solutions do not depend continuously on the initial conditions. In order to overcome the difficulty of the discontinuity, Landweber–Fridman's regularization, famous and well known in applied mathematics, are introduced and investigated to learn whether it is applicable to the present axisymmetric wave propagation problem. From the numerical experiments, it is shown that stable and accurate solutions are realized by the regularization, so that it can be applicable to the determination of the ill-posed Cauchy–Poisson problem.     

Nannoplankton of the Atlantic Ocean from sediment trap samples

Calcareous nannoplankton from sediment trap samples collected at six sites in the Atlantic Ocean from 23° S to 73° N (cruise 20 of R/V Vityaz’ and cruise 33 and 34 of R/V Akademik Mstislav Keldysh). Those samples were studied with a scanning electron microscope. In the coastal and open-sea regions of the North and South Atlantic and in the subarctic region of the Norwegian Sea, the conditions are significantly different. In the shelf area of the Benguela upwelling, 11 species were recognized; some of them were agglutinated by diatoms and tintinnides or covered the surface of pellets. The Broken Spur and TAG pelagic areas of the North Atlantic contained up to 43 coccolith species. They included holococcoliths, large pelagic, and delicate easily soluble species distributed over the entire water column. The presence of coccoliths in the high-latitude area of the Norwegian Sea is related to their supply with the warmer North Atlantic waters. These assemblages are distinguished by a low species diversity and an enhancement of the coccolith solubility with the depth increase.     

First results from the North Iceland experiment

Between June 2004 and September 2004 a temporary seismic network was installed on the northern insular shelf of Iceland and onshore in north Iceland. The seismic setup aimed at resolving the subsurface structure and, thus, the geodynamical transition from Icelandic crust to typical oceanic crust along Kolbeinsey Ridge. The experiment recorded about 1,000 earthquakes. The region encloses the Tjörnes Fracture Zone containing the Husavik–Flatey strike-slip fault and the extensional seismic Grimsey Lineament. Most of the seismicity occurs in swarms offshore. Preliminary results reveal typical mid-ocean crust north of Grimsey and a heterogeneous structure with major velocity anomalies along the seismic lineaments and north–south trending subsurface features. Complementary bathymetric mapping highlight numerous extrusion features along the Grimsey Lineament and Kolbeinsey Ridge. The seismic dataset promises to deliver new insights into the tectonic framework for earthquakes in an extensional transform zone along the global mid-ocean ridge system.     

A stratigraphic and tectonofacies framework of the “calcari aLucina” in the Apennine Chain,Italy

The Apennine Chain provides the first example of stratigraphic (time) and synsedimentary tectonic (space) distribution of the calcari aLucina Miocene equivalents of modern cold-vent carbonates. Chemosynthetic faunal assemblages and related carbonate deposits are found at different stratigraphic levels, with peaks during Langhian-Serravallian and late Tortonian-early Messinian times. A general increase in frequency and volume occurs with time. A genetic link between venting and the Messinian Evaporite event is difficult to demonstrate. However,Lucina limestones are limited to preevaporitic times, and their maximum abundance is reached just before the onset of the Messinian Evaporite accumulation.Lucina limestones occur in almost all tectofacies of the orogen, from backland to foreland.     

On the origin of glauconitic and chamositic granules

Glauconitic minerals range from green smectite to 10Å glauconite, occur mainly in peloids (most of which were fecal pellets), and apparently were produced largely by neoformation replacing several kinds of substrate. Chamositic minerals, berthierine and chamosite, occur in Recent and ancient peloids, but mostly in ancient ooids, and they developed by alteration of a precursor Al-rich clay mineral. Ooid sheaths were built by rolling of cores on ue sea floor. Glauconitic greensands and chamositic oolitic ironstones are condensed sequences deposited as sandwaves during long periods of reduced influx of sediment. Some are associated with hardgrounds.     

Genetic Diversity in Marine Molluscs: A Test of the Niche-Width Variation Hypothesis

Abstract. A test of the niche width variation hypothesis was conducted in the three Mediterranean littoral species of the family Trochidae: Monodonta turbinata, M. turbiformis and Gibbula richardi. Allozymic variation encoded by 26 gene loci was analyzed, and the levels of polymorphism (P), heterozygosity (H) and allele diversity per locus (A) were estimated and appear to support the niche-width variation hypothesis. The broad-niche species, M. turbiformis and G. richardi are more polymorphic and heterozygous than the relatively narrow-niche M. turbinata (P = 0.571; 0.731 and 0.417; H = 0.108; 0.116 and 0.078; A = 2.025; 2.489 and 1.965, respectively).