Residual Exchange Flows in Subtropical Estuaries

Observations of residual exchange flows at the entrance to four subtropical estuaries, two of them semiarid, indicate that these flows are mainly tidally driven, as they compare favorably with theoretical patterns of tidal residual flows. In every estuary examined, the tidal behavior was that of a standing or near-standing wave, i.e., tidal elevation and tidal currents were nearly in quadrature. The pattern of exchange flow that persisted at every estuary exhibited inflow in the channel and outflow over the shoals. Curiously, but also fortuitously, this pattern coincides with the exchange pattern driven by density gradients in other estuaries. The tidal stresses and the residual elevation slopes should be the dominant mechanisms that drive such tidal residual pattern because the Stokes transport mechanism is negligible for standing or near-standing waves. Time series measurements from the semiarid estuaries showed fortnightly modulation of the residual flow by tidal forcing in such a way that the strongest net exchange flows developed with the largest tidal distortions, i.e., during spring tides. This modulation is opposite to the modulation that typically results in temperate estuaries, where the strongest net exchange flows tend to develop during neap tides. The fortnightly modulation on tidal residual currents could be inferred from previous theoretical results because residual currents arise from tidal distortions but is made explicit in this study. The findings advanced herein should allow the drawing of generalities about exchange flow patterns in subtropical estuaries where residual flows are mainly driven by tides.     

Investigating the molecular systematic relationships amongst selected Plesionika (Decapoda: Pandalidae) from the Northeast Atlantic and Mediterranean Sea

Despite the high number of species and ecological diversity of pandalid shrimps, there has been no previous attempt to resolve evolutionary relationships of several genera using molecular tools. Although mitochondrial DNA cytochrome oxidase I (COI) is widely used in barcoding studies to delimit species boundaries, additional insights into phylogenetic affinities can be obtained, especially when used in combination with data from additional genes. The knowledge of molecular diversity is essential to understand phylogenetic relationships and will help systematic clarifications. Based on partial fragments of the 16S and COI genes, we have focused specifically on addressing the systematic relationships of the economically and ecologically important shrimp genus Plesionika within a framework of five genera from within the Pandalidae. Our results showed that species within Plesionika are substantially divergent when compared with other genera, exhibiting the highest average nucleotide divergence, with 0.1123 and 0.0846 in COI and 16S genes, respectively. In addition, sequence divergence was found to vary greatly within the genus Plesionika (COI/16S): 0.0247/0.0016 between Plesionika antigai and Plesionika heterocarpus and 0.1616/0.098 between Plesionika heterocarpus and Plesionika edwardsii. We did not find amino acid sequence divergence between P. heterocarpus and P. antigai compared with P. heterocarpus and P. edwardsii (8.10%, K2P distance). Three species of Plesionika (P. antigai, P. heterocarpus and Plesionika scopifera) appear well separated from other Plesionika species in both maximum likelihood and Bayesian analyses. The present study confirms the utility of COI over 16S as a genetic marker to resolve relationships between different species of Plesionika from the Northeast Atlantic and Mediterranean Sea, in addition to species delimitation. The findings highlight the need to further review paraphyly within Plesionika in an attempt to recognize a concordance in the evolutionary history of Plesionika with major ecological and geological events.     

Impact of irrigated agriculture on groundwater-recharge salinity: a major sustainability concern in semi-arid regions

Intensive irrigated agriculture substantially modifies the hydrological cycle and often has major environmental impacts. The article focuses upon a specific concern—the tendency for progressive long-term increases in the salinity of groundwater recharge derived from irrigated permeable soils and replenishment of unconfined aquifers in more arid regions. This process has received only scant attention in the water-resource literature and has not been considered by agricultural science. This work makes an original contribution by analysing, from scientific principles, how the salinisation of groundwater recharge arises and identifies the factors affecting its severity. If not proactively managed, the process eventually will impact irrigation waterwell salinity, the productivity of agriculture itself, and can even lead to land abandonment. The types of management measure required for mitigation are discussed through three detailed case histories of areas with high-value groundwater-irrigated agriculture (in Spain, Argentina and Pakistan), which provide a long-term perspective on the evolution of the problem over various decades.     

Asteroseismic theory of rapidly oscillating Ap stars

This paper reviews some of the important advances made over the last decade concerning theory of roAp stars.     

Vegetation and topographic controls on sediment deposition and storage on gully beds in a degraded mountain area

Active gully systems developed on highly weathered or loose parent material are an important source of runoff and sediment production in degraded areas. However, a decrease of land pressure may lead to a return of a partial vegetation cover, whereby gully beds are preferred recolonization spots. Although the current knowledge on the role of vegetation on reducing sediment production on slopes is well developed, few studies exist on the significance of restoring sediment transport pathways on the total sediment budget of degraded mountainous catchments. This study in the Ecuadorian Andes evaluates the potential of vegetation to stabilize active gully systems by trapping and retaining eroded sediment in the gully bed, and analyses the significance of vegetation restoration in the gully bed in reducing sediment export from degraded catchments. Field measurements on 138 gully segments located in 13 ephemeral steep gullies with different ground vegetation cover indicate that gully bed vegetation is the most important factor in promoting short‐term (1–15 years) sediment deposition and gully stabilization. In well‐vegetated gully systems ( ≥ 30% of ground vegetation cover), 0.035 m³ m^–1 of sediment is deposited yearly in the gully bed. Almost 50 per cent of the observed variance in sediment deposition volumes can be explained by the mean ground vegetation cover of the gully bed. The presence of vegetation in gully beds gives rise to the formation of vegetated buffer zones, which enhance short‐term sediment trapping even in active gully systems in mountainous environments. Vegetation buffer zones are shown to modify the connectivity of sediment fluxes, as they reduce the transport efficiency of gully systems. First calculations on data on sediment deposition patterns in our study area show that gully bed deposition in response to gully bed revegetation can represent more than 25 per cent of the volume of sediment generated within the catchment. Our findings indicate that relatively small changes in landscape connectivity have the potential to create strong (positive) feedback loops between erosion and vegetation dynamics. Copyright © 2009 John Wiley & Sons, Ltd.     

Magnetic perturbations to the acoustic modes of roAp stars

We study the effect of a large-scale surface magnetic field on the non-radial acoustic modes of roAp stars. Special attention is given to the use of a variational principle which is used for determining the shifts in the frequencies with relative ease, enabling us to avoid having to calculate the perturbed eigenfunctions. With knowledge of the frequency shifts we then estimate the eigenfunctions in a simpler, albeit approximate way. The results indicate frequency shifts of the order of few μHz, which depend on the order, degree and azimuthal order of the mode. The loss of energy through Alfvén waves is also estimated from the imaginary parts of the frequency shifts. The results indicate that the loss is particularly high near specific frequencies. This might indicate the presence of a selection effect, which could make some modes more likely to be excited than others. However, our results do not explain why the modes observed appear always to be aligned with the axis of the magnetic field. Finally, the estimated perturbed eigenfunctions contain strong components of spherical harmonics that differ from those of the original unperturbed modes.     

Distribution patterns of interstitial polychaetes in sandy beaches of southern Brazil

This study describes the distribution patterns of interstitial polychaetes along morphodynamic gradients on six exposed sandy beaches in Santa Catarina and Paraná (South Brazil). Three random transects were sampled at two points on each beach, one at the swash and another at the surf zone, in winter and summer conditions. Six sediment replicates were collected at each sampling point using a corer of 4.6 cm internal diameter that removed 10 cm into the sediment. Abundance and composition of interstitial polychaete were correlated to wave height, slope, grain size, CaCO₃, chlorophyll a , omega indexes, temperature and relative tide range using a canonical correspondence analysis (CCA). A factorial ANOVA showed that taxa richness, mean density and Shannon's diversity were significantly higher at the reflective beaches, but average values differ significantly between transects and these differences change according to the beach zones on both sampling dates. PERMANOVA showed that polychaete associations differ among transects according to the beach zones. The composition of interstitial polychaete associations was significantly correlated to beach morphodynamics and features (P < 0.01). Polychaete associations of reflective beaches were more diverse than in other morphodynamic states. Intermediate beaches may also sustain diverse associations due to temporal variability of the morphodynamic patterns. Beaches presenting extreme dissipative morphodynamics and compacted sediments appear to be unfavourable for the occurrence of interstitial polychaetes.     

Pathogenic fungi: an unacknowledged risk at coastal resorts? New insights on microbiological sand quality in Portugal

Whilst the potential impact on beach users from microorganisms in water has received considerable attention, there has been relatively little investigation into microbial contaminants in sand. Thirty three beaches across Portugal were analyzed during a five year period (2006-2010) to determine the presence of yeasts, pathogenic fungi, dermatophytes, total coliforms, Escherichia coli and intestinal enterococci in sand.Our results showed that 60.4% of the samples were positive for fungi and that 25.2% were positive for the bacterial parameters. The most frequent fungal species found were Candida sp. and Aspergillus sp., whereas intestinal enterococci were the most frequently isolated bacteria. Positive associations were detected among analyzed parameters and country-regions but none among those parameters and sampling period.Regarding threshold values, we propose 15 cfu/g for yeasts, 17 cfu/g for potential pathogenic fungi, 8 cfu/g for dermatophytes. Eighty four cfu/g for coliforms, 250 cfu/g for E. coli, and 100 cfu/g for intestinal enterococci.     

On a four-body problem

In this paper we study a particular four-body problem: three bodies revolve around their center of mass in circular orbits under the influence of their mutual gravitational attraction, while a fourth body moves in the plane defined by the three bodies but non influencing their motion. The linear stability of the eight equilibrium points is studied, and it is found that it depends on the values of the masses.