Earth Observation Scientific Workflows in a Distributed Computing Environment

Geospatially Enabled Scientific Workflows offer a promising toolset to help researchers in the earth observation domain with many aspects of the scientific process. One such aspect is that of access to distributed earth observation data and computing resources. Earth observation research often utilizes large datasets requiring extensive CPU and memory resources in their processing. These resource intensive processes can be chained; the sequence of processes (and their provenance) makes up a scientific workflow. Despite the exponential growth in capacity of desktop computers, their resources are often insufficient for the scientific workflow processing tasks at hand. By integrating distributed computing capabilities into a geospatially enabled scientific workflow environment, it is possible to provide researchers with a mechanism to overcome the limitations of the desktop computer. Most of the effort on extending scientific workflows with distributed computing capabilities has focused on the web services approach, as exemplified by the OGC's Web Processing Service and by GRID computing. The approach to leveraging distributed computing resources described in this article uses instead remote objects via RPyC and the dynamic properties of the Python programming language. The Vistrails environment has been extended to allow for geospatial processing through the EO4Vistrails package ( http://code.google.com/p/eo4vistrails/ ). In order to allow these geospatial processes to be seamlessly executed on distributed resources such as cloud computing nodes, the Vistrails environment has been extended with both multi‐tasking capabilities and distributed processing capabilities. The multi‐tasking capabilities are required in order to allow Vistrails to run side‐by‐side processes, a capability it does not currently have. The distributed processing capabilities are achieved through the use of remote objects and mobile code through RPyC.     

Efficacy of a multi-metric fish index as an analysis tool for the transitional fish component of the Water Framework Directive

The WFD has introduced an international commitment to assess the ecological status of transitional waters (TWs), within which fish communities are a key biological monitoring component. The Transitional Fish Classification Index (TFCI) outlined in this paper uses 10 ecological measures to analyse fish populations caught from various ecological niches using a variety of gear types within the Thames estuary. These reach and method-specific communities are then compared to a reference population created from a 'healthy' population from TWs of a similar type. The results indicate a progressive downstream increase the quality of fish communities, consistent with previous work; variation between methods can be accounted for by gear selectivity. Overall, the TFCI is an effective communication tool for converting ecological information into an easily understood format for managers, policy makers and the general public.     

Morphological analysis of active Mount Nemrut stratovolcano, eastern Turkey: evidences and possible impact areas of future eruption

Mount Nemrut, an active stratovolcano in eastern Turkey, is a great danger for its vicinity. The volcano possesses a summit caldera which cuts the volcano into two stages, i.e. pre- and post-caldera. Wisps of smoke and hot springs are to be found within the caldera. Although the last recorded volcanic activity is known to have been in 1441, we consider here that the last eruption of Nemrut occurred more recently, probably just before 1597. The present active tectonic regime, historical eruptions, occurrence of mantle-derived magmatic gases and the fumarole and hot spring activities on the caldera floor make Nemrut Volcano a real danger for its vicinity. According to the volcanological past of Nemrut, the styles of expected eruptions are well-focused on two types: (1) occurrence of water within the caldera leads to phreatomagmatic (highly energetic) eruptions, subsequently followed by lava extrusions, and (2) effusions–extrusions (non-explosive or weakly energetic eruptions) on the flanks from fissures. To predict the impact area of future eruptions, a series of morphological analyses based on field observations, Digital Elevation Model and satellite images were realized. Twenty-two valleys (main transport pathways) were classified according to their importance, and the physical parameters related to the valleys were determined. The slope values in each point of the flanks and the Heim parameters H/L were calculated. In the light of morphological analysis the possible impact areas around the volcano and danger zones were proposed. The possible transport pathways of the products of expected volcanic events are unified in three main directions: Bitlis, Guroymak, Tatvan and Ahlat cities, the about 135 000 inhabitants of which could be threatened by future eruptions of this poorly known and unsurveyed volcano.     

Sedimentary Deposits from the 17 July 2006 Western Java Tsunami,Indonesia: Use of Grain Size Analyses to Assess Tsunami Flow Depth,Speed, and Traction Carpet Characteristics

The 2006 western Java tsunami deposited a discontinuous sheet of sand up to 20 cm thick, flooded coastal southern Java to a depth of at least 8 m and inundated up to 1 km inland. In most places the primarily heavy mineral sand sheet is normally graded, and in some it contains complex internal stratigraphy. Structures within the sand sheet probably record the passage of up to two individual waves, a point noted in eyewitness accounts. We studied the 2006 tsunami deposits in detail along a flow parallel transect about 750 m long, 15 km east of Cilacap. The tsunami deposit first becomes discernable from the underlying sediment 70 m from the shoreline. From 75 to 300 m inland the deposit has been laid down in rice paddies, and maintains a thickness of 10–20 cm. Landward of 300 m the deposit thins dramatically, reaching 1 mm by 450 m inland. From 450 m to the edge of deposition (around 700 m inland) the deposit remains <1 mm thick. Deposition generally attended inundation—along the transect, the tsunami deposited sand to within about 40 m of the inundation limit. The thicker part of the deposit contains primarily sand indistinguishable from that found on the beach 3 weeks after the event, but after about 450 m (and roughly coinciding with the decrease in thickness) the tsunami sediment shifts to become more like the underlying paddy soil than the beach sand. Grain sizes within the deposit tend to fine upward and landward, although overall upward fining takes place in two discrete pulses, with an initial section of inverse grading followed by a section of normal grading. The two inversely graded sections are also density graded, with denser grains at the base, and less dense grains at the top. The two normally graded sections show no trends in density. The inversely graded sections show high density sediment to the base and become less dense upward and represents traction carpet flows at the base of the tsunami. These are suggestive of high shear rates in the flow. Because of the grain sorting in the traction carpet, the landward-fining trends usually seen in tsunami deposits are masked, although lateral changes of mean sediment grain size along the transect do show overall landward fining, with more variation as the deposit tapers off. The deposit is also thicker in the more seaward portions than would be produced by tsunamis lacking traction carpets.     

Investigation of Arsenotrophic Microbiome in Arsenic‐Affected Bangladesh Groundwater

Arsenotrophic bacteria contribute to the nutrient cycling in arsenic (As) affected groundwater. This study employed a culture‐independent and ‐dependent investigation of arsenotrophic microbiomes in As affected groundwater samples collected from Madhabpur, Sonatengra, and Union Porishod in Singair Upazila, Manikganj, Bangladesh. Total As contents, detected by Atomic Absorption Spectrophotometry (AAS) of the samples, were 47 µg/L (Madhabpur, SNGW‐1), 53 µg/L (Sonatengra, SNGW‐2), and 12 µg/L (Union porishod, SNGW‐3), whereas the control well (SNGW‐4; depths >150 m) showed As content of 6 µg/L. Denaturing Gradient Gel Electrophoresis (DGGE) analysis of the amplified 16S rRNA gene from As‐affected groundwater samples revealed the dominance of aerobic bacteria Pseudomonas within heterogeneous bacterial populations. DGGE of heterotrophic enrichments supplemented with arsenite [As (III)] for 4 weeks showed the dominance of Chryseobacterium, Flavobacterium, and Aquabacterium, whereas the dominant genera in that of autotrophic enrichments were Aeromonas, Acinetobacter, and Pseudomonas. Cultured bacteria retrieved from both autotrophic and heterotrophic enrichments were distinguished into nine genotypes belonging to Chryseobacterium, Acinetobacter, Escherichia, Pseudomonas, Stenotrophomonas, Janibacter, Staphylococcus, and Bacillus. They exhibited varying range of As(III) tolerance from 4 to 27 mM. As(III) transformation potential was confirmed within the isolates with oxidation rate as high as 0.143 mM/h for Pseudomonas sp. Sn 28. The arsenotrophic microbiome specifies their potential role in groundwater As‐cycling and their genetic information provide the scientific basis for As‐bioremediation.     

Rapid sunspot motion during a major solar flare

A major solar flare on 15 November, 1991 produced a striking perturbation in the position and shape of the sunspot related most closely to the flare. We have studied these perturbations by use of the aspect-sensor images from the Soft X-ray Telescope on board YOHKOH, and with ground-based data from the Mees Solar Observatory. The perturbation occurred during the impulsive phase of the flare, with a total displacement on the order of 1 arc sec. The apparent velocity of approximately 2 km s^–1 exceeds that typically reported for sunspot proper motions even in flare events. We estimate that the magnetic energy involved in displacing the sunspot amounted to less than 4 × 10³⁰ ergs, comparable to the radiant energy from the perturbed region. Examination of the Mees Observatory data shows that the spot continued moving at lower speed for a half-hour after the impulsive phase. The spot perturbation appears to have been a result of the coronal restructuring and flare energy release, rather than its cause.     

Comparison and Hydrochemical Characterization of Groundwater Resources in the Arabian Peninsula: A Case Study of Al-Baha and Al-Qassim in Saudi Arabia

Water Resources - The objective of this study was to compare and assess the quality and study the hydrochemistry of groundwater in the Al-Baha and Al-Qassim areas, representing the Arabian Shield...     

Bringing globalization to the countryside: Special Economic Zones in India

Special Economic Zones (SEZs) are important vectors of neoliberal globalization in India. Despite facing widespread resistance against the proposed land acquisition for these zones, they are still being promoted across the country. We argue that the wealth redistribution to the country's elites and the fractured resistance movements enable neoliberalism and its practices to grow in the countryside. Using a private sector SEZ in Gurgaon as a case study, this article explores how special economic zoning, as a neoliberal policy, has been implicated in the spatialized production of poverty. We also show that the main actors who promote neoliberalism in India (the state and the large‐scale urban private sector) have found a seemingly unlikely ally in rural India in the form of farmers with large landholdings, rural elites who are willing to let go of their land under certain conditions. The data for the article was collected in India in 2009–10.     

Provisional Elemental Values for IAEA‐Sewage Sludge by Instrumental Neutron Activation Analysis

The International Atomic Energy Agency (IAEA) organised a proficiency test (PT), IAEA‐CU‐2010‐02, for the determination of elements in sewage sludge. The PT sample was analysed by semi‐absolute standardless k₀‐instrumental neutron activation analysis (k₀‐INAA). Results for seven elements (As, Co, Cr, Fe, Hg, Se, Zn) were submitted to the IAEA by our laboratory. All of our results were scored ‘acceptable’ by the ‘result evaluation criteria’ adopted by the IAEA. The same analytical methodology produced quantitative results for twenty‐six additional elements. In total, thirty‐six elements were determined with uncertainty varying from 4 to 11%. This paper presents the provisional mass fractions of twenty‐six additional elements (Ag, Al, Br, Ca, Ce, Cl, Dy, Eu, Ga, Hf, I, K, La, Mg, Mn, Na, Rb, Sb, Sc, Sm, Ta, Tb, Th, V, U, W) not reported by the IAEA. The analytical methodology was discussed with important sources of spectral, nuclear and fission‐product interferences. It was shown that the important components of uncertainties were the k₀ factor, Q₀ factor, detector efficiency, mass and counting statistics. The methodology was validated by analysing the IAEA‐S7 reference material.