Use of molecular approaches in hydrogeological studies: the case of carbonate aquifers in southern Italy

Waterborne pathogens represent a significant health risk in both developed and developing countries with sensitive sub-populations including children, the elderly, neonates, and immune-compromised people, who are particularly susceptible to enteric infections. Annually, approximately 1.8 billion people utilize a faecally contaminated water source, and waterborne diseases are resulting in up to 2.1 million human mortalities globally. Although groundwater has traditionally been considered less susceptible to contamination by enteric pathogens than surface water due to natural attenuation by overlying strata, the degree of microbial removal attributable to soils and aquifers can vary significantly depending on several factors. Thus, accurate assessment of the variable presence and concentration of microbial contaminants, and the relative importance of potentially causative factors affecting contaminant ingress, is critical in order to develop effective source (well) and resource (aquifer) protection strategies. “Traditional” and molecular microbiological study designs, when coupled with hydrogeological, hydrochemical, isotopic, and geophysical methods, have proven useful for analysis of numerous aspects of subsurface microbial dynamics. Accordingly, this overview paper presents the principal microbial techniques currently being employed (1) to predict and identify sources of faecal contamination in groundwater, (2) to elucidate the dynamics of contaminant migration, and (3) to refine knowledge about the hydrogeological characteristics and behaviours of aquifer systems affected by microbial contamination with an emphasis on carbonate aquifers, which represent an important global water supply. Previous investigations carried out in carbonate aquifers in southern Italy are discussed.     

Episodic Biogeochemical Variability in a Low-Flow Mediterranean Estuary

To investigate to what extent episodic physical processes regulate nutrient availability and phytoplankton assemblages of the Mahon estuary (Minorca Island), we carried out an intensive field study during 2010–2011. During the study period, environmental conditions spanned from intense stratification to a continuous mixing and from lack of riverine inflow to intense runoff. Our data reveals a sequence of biogeochemical states of the estuary that result from the interplay between runoff, other non-periodic forcings (winds, sea level oscillations), and variations in water renewal. Seasonal runoff was revealed as a major driver of winter circulation and of the influx of inorganic nutrients, in particular nitrate. However, because of the combination between runoff and flushing time, the effects of floodwater events on phytoplankton are short-lived (days). Conversely, during summer, when freshwater influx declines, water renewal relies on pulsed atmospheric forcing that may be of local or remote origin. As depicted from the low nitrate concentrations (<1 μM) and enhanced ammonium (>1 μM), this change in circulation and external loads carries nutrient assimilation within the estuary head and forces the use of remnant nutrients through regenerating pathways to sustain an enhanced phytoplankton biomass at the lower estuary. Episodic variability represented between 52 and 65% of the annual chlorophyll variance. Despite the fact that episodic pulses represented intense departures from base biogeochemical state of the estuary, at time scale larger than weeks, the phytoplankton community composition and dynamics was largely regulated by the integrated effect of these episodes and other environmental drivers associated with seasonality rather than by individual storm events only. Our results suggest that even though the system presents good recovery capacity to individual storm episodes, it may be more vulnerable to increased nutrient fluxes during summer, as well as to changes in episode timing and frequency.     

Analysis of simple shear tests with cell pressure confinement

The high cost of offshore infrastructure provides continuous encouragement for optimisation of design practices. Development of a more rational method to interpret results from simple shear tests with cell pressure confinement can reduce costs and improve reliability of offshore infrastructure. This paper addresses a commonly overlooked issue affecting design parameter selection: specimen shape varies from right cylinder to oblique cylinder after loading along a single shearing direction. Thus, horizontal stresses are not always equal to the cell pressure and their magnitude varies throughout the specimen’s lateral surface. An analysis is proposed that accounts for changing specimen geometry and lateral surface area during shearing and for the actual effect of cell pressure during testing. The analysis also describes how the intermediate principal stress can be assessed. Test results for medium dense silica sand are interpreted following de Josselin de Jong’s alternative shearing mechanism hypothesis. Conventional interpretation methods yield conservative design parameters for this soil. Failure states develop when the intermediate principal effective stress is halfway between major and minor principal effective stresses. Typical results for the soil tested show equipment performance meets standard direct simple shear requirements for shear strain rate, vertical stress and specimen height control.     

Mass rig system for shaking table tests of slender columns

A new mass rig system is proposed to minimize the deficiencies in current shaking table testing setups. This is accomplished by placing the inertial mass on a convex path designed to impose P‐Delta demands on slender cantilever columns. The design and performance of the mass rig system, and the principles used in deriving the equations of motion and their analytical validation against results obtained from shaking table tests, are presented. Formulation of the governing equations of motion was based on Lagrangian mechanics and solved using an implicit linear acceleration method with an adaptive time step formulation. Friction developed in the sliding system was also incorporated in the equations of motion. Experimental results validated the accuracy in the derivation and solution of the equations of motion. Validated by analytical and experimental results, P‐Delta effects were found to increase the displacement demands on slender columns in the low‐frequency range of acceleration input, while in the high‐frequency range P‐Delta effects led to no increase and in some cases even a reduction in displacement demands. Copyright © 2015 John Wiley & Sons, Ltd.     

Evaluating proxies for estimating subaerial beach volume change across increasing time scales and various morphologies

Proxies, such as changes in beach profiles and shoreline positions, are commonly used in management and research for estimating changes in subaerial beach volume; however, the accuracy of these proxies across increasing time scales and complex morphologies is unclear. Volume changes associated with along‐beach morphologic variability may not be captured well by changes in profiles, while volume changes associated with across‐beach morphologic variability may not be captured well by measuring shoreline change. This study assesses the impacts of morphologic variations, associated with beach cusps and nourishment material, on volume change estimates from profiles and shoreline change at 0.5 to 3.5 year time periods. Results indicate that profiles spaced ≥ 150 m apart and the shoreline‐change proxy will likely estimate volume change inaccurately over periods ≤ 1 year at beaches that are consistently eroding or accreting and contain cusps. However, over longer time periods (1–3.5 years), estimates of volume change from both proxies improved at those types of beaches. Volume changes at the edges of nourishment areas are not captured well by profiles. When the nourishment material is graded to a ramped morphology, which minimizes across‐beach morphologic variability, the shoreline‐change proxy does accurately estimate volume changes. Both proxies estimate volume changes inaccurately at beaches where volume changes oscillate between erosion and accretion on both short and long time scales because the magnitude of small‐scale changes in volume from the formation and erosion of morphologic features, such as cusps and berms, will always be similar to the longer‐term net volume change. This study suggests that decadal records of shoreline change, which are commonly developed using aerial photography, can be used to help identify the best proxy for estimating volume change; however, recent anthropogenic modifications that impact patterns of beach sedimentation, including nourishment, terminal groins, and inlet‐channel dredging, makes decadal records less useful. Copyright © 2013 John Wiley & Sons, Ltd.     

Paleoflood events recorded by speleothems in caves

Speleothems are usually composed of thin layers of calcite (or aragonite). However, cemented detrital materials interlayered between laminae of speleothemic carbonate have been also observed in many caves. Flowstones comprising discontinuous carbonate layers form due to flowing water films, while flood events introduce fluviokarstic sediments in caves that, on occasion, are recorded as clayey layers inside flowstones and stalagmites. This record provides a potential means of understanding the frequency of palaeofloods using cave records. In this work, we investigate the origin of this type of detrital deposit in El Soplao Cave (Northern Spain). The age of the lowest aragonite layer of a flowstone reveals that the earliest flood period occurred before 500 ka, though most of the flowstone formed between 422 +69/‐43 ka and 400 +66/‐42 ka. This suggests that the cave was periodically affected by palaeoflood events that introduced detrital sediments from the surface as a result of occasional extreme rainfall events, especially at around 400 ka. The mineralogical data enable an evolutionary model for this flowstone to be generated based on the alternation of flood events with laminar flows and carbonate layers precipitation that can be extrapolated to other caves in which detrital sediments inside speleothems have been found. Copyright © 2014 John Wiley & Sons, Ltd.     

Fire severity and surface rock fragments cause patchy distribution of soil water repellency and infiltration rates after burning

Although fire‐induced soil water repellency (SWR) and its effects on soil hydrology and geomorphology have been studied in detail, very few studies have considered the effect of rock fragments resting on the soil surface or partly embedded in soil. In this research, we have studied the effect of rock fragments on the strength and spatial distribution of fire‐induced SWR at different fire severities. A fire‐affected area was selected for this experiment and classified into different zones according to fire severity (unburned, low, moderate and high) and rock fragment cover (low, <20% and high, >60%). During 7 days after fire, SWR and infiltration rates were assessed in the soil surface covered by individual rock fragments and in the midpoint between two adjacent rock fragments (with maximum spacing of 20 cm). SWR increased with fire severity. Rock fragments resting on the soil surface increased the heterogeneity of the spatial distribution of fire‐induced SWR. SWR increased significantly with rock fragment cover in bare areas under moderate and high fire severity, but quantitatively important changes were only observed under high fire severity. In areas with a low rock fragment cover, water repellency from soil surfaces covered by rock fragments increased relative to bare soil surfaces, with increasing SWR. In areas with a high rock fragment cover, SWR increased significantly from non‐covered to covered soil surfaces only after low‐severity burning. Rock fragment cover did not affect infiltration rates, although it decreased significantly in soil surfaces after high‐severity burning in areas under low and high rock fragment cover. Copyright © 2013 John Wiley & Sons, Ltd.     

Effect of selection and sequencing of representative wave conditions on process-based predictions of equilibrium embayed beach morphology

In order to decrease the simulation time of morphodynamic models, often-complex wave climates are reduced to a few representative wave conditions (RWC). When applied to embayed beaches, a test of whether a reduced wave climate is representative or not is to see whether it can recreate the observed equilibrium (long-term averaged) bathymetry of the bay. In this study, the wave climate experienced at Milagro Beach, Tarragona, Spain was discretized into ‘average’ and ‘extreme’ RWCs. Process-based morphodynamic simulations were sequenced and merged based on ‘persistent’ and ‘transient’ forcing conditions, the results of which were used to estimate the equilibrium bathymetry of the bay. Results show that the effect of extreme wave events appeared to have less influence on the equilibrium of the bay compared to average conditions of longer overall duration. Additionally, the persistent seasonal variation of the wave climate produces pronounced beach rotation and tends to accumulate sediment at the extremities of the beach, rather than in the central sections. It is, therefore, important to account for directional variability and persistence in the selection and sequencing of representative wave conditions as is it essential for accurately balancing the effects beach rotation events.