Effects of variable winds on biological productivity on continental shelves in coastal upwelling systems

The production and distribution of biological material in wind-driven coastal upwelling systems are of global importance, yet they remain poorly understood. Production is frequently presumed to be proportional to upwelling rate, yet high winds can lead to advective losses from continental shelves, where many species at higher trophic levels reside. An idealized mixed-layer conveyor (MLC) model of biological production from constant upwelling winds demonstrated previously that the amount of new production available to shelf species increased with upwelling at low winds, but declined at high winds [Botsford, L.W., Lawrence, C.A., Dever, E.P., Hastings, A., Largier, J., 2003. Wind strength and biological productivity in upwelling systems: an idealized study. Fisheries Oceanography 12, 245–259]. Here we analyze the response of this model to time-varying winds for parameter values and observed winds from the Wind Events and Shelf Transport (WEST) study region. We compare this response to the conventional view that the results of upwelling are proportional to upwelled volume. Most new production per volume upwelled available to shelf species occurs following rapid increases in shelf transit time due to decreases in wind (i.e. relaxations). However, on synoptic, event time-scales shelf production is positively correlated with upwelling rate. This is primarily due to the effect of synchronous periods of low values in these time series, paradoxically due to wind relaxations. On inter-annual time-scales, computing model production from wind forcing from 20 previous years shows that these synchronous periods of low values have little effect on correlations between upwelling and production. Comparison of model production from 20 years of wind data over a range of shelf widths shows that upwelling rate will predict biological production well only in locations where cross-shelf transit times are greater than the time required for phytoplankton or zooplankton production. For stronger mean winds (narrower shelves), annual production falls below the peak of constant wind prediction [Botsford et al., 2003. Wind strength and biological productivity in upwelling systems: an idealized study. Fisheries Oceanography 12, 245–259], then as winds increase further (shelves become narrower) production does not decline as steeply as the constant wind prediction.     

Zooplankton Feeding Ecology: Contents of Fecal Pellets of the Cyclopoid Copepods Oncaea venusta, Corycaeus amazonicus, Oithona plumifera, and O. simplex from the Northern Gulf of Mexico

Abstract. In situ feeding habits of the cyclopoid copepods Oncaea venusta, Corycaeus amazonicus, Oithona plumifera , and O. simplex were investigated by scanning electron microscope examination of fecal pellets, the contents of which reflected copepod gut contents upon capture. Peilet contents were compared with assemblages of phytoplankton present in surface waters at times of copepod collection. All samples were from the northern Gulf of Mexico. All four copepods fed upon phytoplankton and O. venusta also ingested other crustaceans. Dominant components of fecal pellets generally did not mirror those of available phytoplankton assemblages. In some cases, O. venusta ingested primarily larger-sized particles even when these were not most abundant, and in other cases it did not ingest large cells even when they were present in bloom concentrations. The presence of small (< 2–5 urn diameter) centric diatoms in O. venusta pellets suggests the possibility of feeding by mechanisms other than suspension or raptorial feeding. Limited observations suggest that C. amazonicus and O. plumifera may feed raptorially on larger particles even when these are not particularly abundant, and that the small O. simplex (< 500 nm total length) feeds mainly upon nanoplankton. It appears that cyclopoid feeding mechanisms are complex, and likely more so than those of many calanoids.     

An evaluation of metal bioaccessibility in estuarine sediments using the commercially available protein, bovine serum albumin

The bioaccessibility of metals (Al, Ca, Fe, Mn, Ag, Cd, Co, Cu, Ni, Pb, Sn, Zn) in oxic estuarine sediments has been evaluated using solutions of a commercially available protein (bovine serum albumin; BSA) that mimic the chemical conditions encountered in the gut environment of many deposit-feeding organisms. Over a 20 h incubation period with 5 g L^− 1 BSA, metal mobilisation was generally biphasic in that a relatively short period of rapid release was succeeded by more gradual release or approach to equilibrium, although in some cases metal readsorption was evident during the time-courses. Availability to BSA, defined as metal released after 20 h relative to metal extracted by boiling aqua regia, was greatest for Cd, Ni, Ca and Zn and lowest for Fe and Mn, and correlated well with, but was an order of magnitude lower than, metal digested by acidified hydrogen peroxide. Time-courses conducted in the absence of the protein revealed that significant quantities of Ca and Mn were water-soluble, reflecting the partial dissolution of carbonates and hydrous Mn oxides, respectively. Additional experiments indicated a net increase in metal release with increasing BSA concentration and, with the exception of Ca and Mn, a substantial increase in metal mobilisation after sediment organic matter had been digested by peroxidation. These observations suggest that, apart from Ca and Mn, metal release proceeds via complexation with component amino acids of the protein, denudation of organic host phases, and exposure of inorganic, metal-bearing minerals. Accordingly, the bioaccessibility of a metal is predicted to be dependent on its (i) affinity for proteinaceous ligands, (ii) association with components of digestible sediment organic matter, and (iii) degree of binding at relatively weak sites on sediment phases that are exposed or modified by the action of proteins and other chemical constituents of the gut environment.     

A New Methodology for Incorporating Tide Gauge Data in Sea Surface Topography Models

As part of the Vertical Offshore Reference Frames (VORF) project sponsored by the U. K. Hydrographic Office, a new model for Sea Surface Topography (SST) around the British Isles has been developed. For offshore areas (greater than 30 km from the coast), this model is largely derived from satellite altimetry. However, its accuracy and level of detail have been enhanced in coastal areas by the inclusion of not only the 60 PSMSL tide gauges with long-term records around the coasts of the United Kingdom and Ireland but also some 385 gauges established at different epochs and for different observation spans by the U. K. Admiralty. All tide gauge data were brought into a common reference frame by a combination of datum models and direct GPS observations, but a more significant challenge was to bring all short-term sea level observations to an unbiased value at a common epoch. This was achieved through developing a spatial-temporal correlation model for the variations in mean sea level around the British Isles, which in turn meant that gauges with long-term observation spans could be used as control points to improve the accuracy of Admiralty gauges. It is demonstrated that the latter can contribute point observations of mean sea level (MSL) with a precision of 0.078 m. A combination of least squares collocation and interpolation was developed to merge the coastal point and offshore gridded data sets, with particular algorithms having to be developed for different configurations of coastal topology. The resulting model of sea surface topography is shown to present a smooth transition from inshore coastal areas to offshore zones. Further benefits of the techniques developed include an enhanced methodology for detecting datum discontinuities at permanent tide gauges.     

The Ah receptor in marine animals: phylogenetic distribution and relationship to cytochrome P4501A inducibility

In mammals, the induction of cytochrome P4501A forms by chlorinated dibenzo-p-dioxins, chlorinated dibenzofurans, and halogenated biphenyls is under control of a soluble protein known as the Ah (aromatic hydrocarbon) receptor. Little is known about the presence and properties of the Ah receptor in other vertebrate and invertebrate species. In these studies, we sought evidence for an Ah receptor in the liver or liver-equivalent of 20 species of marine and freshwater animals, using the photoaffinity ligand 2-azido-3-[¹²⁵I] iodo-7,8-dibromodibenzo-p-dioxin (N₃[¹²⁵I]Br₂DD). Specific labeling of cytosolic proteins by N₃[¹²⁵I]Br₂DD was observed in seven species of teleost and elasmobranch fish, in PLHC-I fish hepatoma cells, and in beluga whales. No specifically labeled proteins were found in cytosol from two species of agnathan fish nor in any of nine invertebrate species representing eight classes of four phyla. The presence or absence of specifically labeled polypeptides corresponds with the inducibility of cytochrome P4501A and sensitivity to the toxic effects of 2,3,7,8-tetrachlorodibenzo-p-dioxin and related planar halogenated aromatic hydrocarbons in many of these groups. Thus, Ah receptor function may have arisen early invertebrate evolution and has been conserved from elasmobranch and teleost fish to mammals.     

Probing molecular-level transformations of dissolved organic matter: insights on photochemical degradation and protozoan modification of DOM from electrospray ionization Fourier transform ion cyclotron resonance mass spectrometry

Molecular-level characterization of natural organic matter (NOM) has been elusive due to the inherent complexity of natural organic mixtures and to the fact that individual components are often polar and macromolecular. Electrospray ionization (ESI) is a “soft” ionization technique that ionizes polar compounds from aqueous solution prior to injection into a mass spectrometer. The highest resolution and mass accuracy of compounds within NOM have been achieved when ESI is combined with an ultrahigh-resolution mass spectrometer such as the Fourier transform ion cyclotron resonance mass spectrometer (FT-ICR MS). With this technique, individual molecules within a variety of natural organic mixtures can be detected and their elemental composition can be determined. At low mass-to-charge (m/z) ratio, the resolution is high enough to assign exact molecular formulas allowing specific components of these mixtures to be identified. In addition to molecular identification, we can now use ESI FT-ICR MS to examine molecular-level changes in different organic mixtures as a function of relevant geo-processes, such as microbial alterations and photochemistry. Here we present the results from the application of ESI FT-ICR MS to two geochemical questions: (1) the effect of photoirradiation on the molecular composition of fulvic acids and (2) the role of protozoan grazers in the modification of DOM in aquatic systems.     

Contributions to atmospheric methane by natural seepages on the U.K. continental shelf [Mar. Geol. 137 (1997) 165–189]

Natural gas seepages occur on the United Kingdom's continental shelf and although published reports suggest that they are very rare, the petroleum industry has identified, but not publicly reported, many more. There is also very little data on the flux of gas from seabed seepages, and even less on the contribution of seepages to atmospheric concentrations of gases such as methane.

Potential gas source rocks include Quaternary and Tertiary peats as well as petroliferous source rocks such as the Carboniferous Coal Measures and the Upper Jurassic Kimmeridge Clays. There are also other organic-rich sediments which are potential source rocks. Together these cover a considerable part of the U.K. continental shelf.

Analogue seismic reflection (pinger) profiles acquired during the British Geological Survey's regional mapping programme have been reviewed to identify water column targets including fish and plumes of gas bubbles. The ability to distinguish targets is critical to an assessment of the distribution of gas seepages. Both theoretical predictions of target identity and the habits of shoaling fish have been investigated in order to identify a method of distinction.

Data from seabed seepages and measurements of seepage rates have been used to establish likely ranges of gas flux rates and the sizes of gas bubbles. The likelihood that a rising bubble will survive and escape into the atmosphere is determined primarily by bubble size and water depth; methane, the principal constituent of seepage gas, is relatively unreactive and sparingly soluble.

The studies have enabled a new estimate of the distribution of gas seepages on the U.K. continental shelf, and of the contribution to atmospheric methane levels. The results suggest that natural gas seepages are significantly more important as a source of methane than had hitherto been established. It is estimated that between 120,000 and 3.5 mtonnes of methane per year come from a continental shelf area of about 600,000 km². This represents between 2% and 40% of the total United Kingdom methane emission. It is suggested that similar contributions arise from other continental shelf areas worldwide, and that geological sources of atmospheric methane are more significant than is generally acknowledged.     

Magnetoacoustic-gravity surface waves

The linearized theory for the parallel propagation of magnetoacoustic-gravity surface waves is developed for an interface of a horizontal magnetic field above a field-free medium. The media either side of the interface are taken to be isothermal. The dispersion relation is obtained for the case of a constant Alfvén speed. In the absence of gravity the interface may support one or two surface modes, determined by the relative temperatures and magnetism of the two media. The effect of gravity on the modes is examined and dispersion diagrams and eigenfunctions are given. In the usual - k _x diagnostic diagram, the domain of evanescence is shown to be divided into two distinct regions determining whether a given mode will have a decaying or growing vertical velocity component. In the absence of a magnetic field the transcendental dispersion relation may be rewritten as a polynomial. This polynomial possesses two acceptable solutions only one of which may exist in any given circumstances (depending on the ratio of the densities). If the gas density within the field exceeds that in the field-free medium, then the f-mode may propagate. The f-mode exists in a restricted band of horizontal wavenumber and only when the field-free medium is warmer than the magnetic atmosphere. An analytical form for the wave speed of the f-mode is obtained for small values of the Alfvén speed. It is shown that the f-mode is related to the fast magnetoacoustic surface wave, merging into that mode at short wavelengths.     

Below- and Aboveground Spartina alterniflora Production in a Louisiana Salt Marsh

The monthly variations of below- and aboveground biomass of Spartina alterniflora were documented for a south Louisiana salt marsh from March 2004 to March 2005, and in March 2006 and 2007. The annual production rate above- and belowground was 1821 and 11,676 g m^?2, respectively (Smalley method), and the annual production rate per biomass belowground was 10.7 g dry weight^?1, which are highs along the latitudinal distributions of the plant’s range. The average root + rhizome/shoot ratio (R&R/S) was 2.6:1, which is lower than the R&R/S ratios of 4 to 5.1 reported for Spartina sp. marshes in the northeastern US. The belowground biomass increased from July to September and fluctuated between October and November, after which it declined until February when the growing season began. The belowground biomass was dominated by rhizomes, which declined precipitously in spring and then rose to a seasonal high in the month before declining again as the late summer rise in inflorescence began. Over half of the root biomass in a 30-cm soil profile was in the upper 10 cm, and in the 10- to 20-cm profile for rhizomes. The maximum March biomass above- and belowground was four to five times that of the minimum biomass over the four sampling years. The net standing stock (NSS) of N and P in live biomass aboveground compared to that in the belowground biomass was about 1.7 times higher and equal, respectively, but the NSS of N and P for the live + dead biomass was about six times higher belowground. The average nitrogen/phosphorous molar ratios of 16:1 aboveground is in agreement with the often tested N limitation of biomass accumulation aboveground, whereas the 37:1 belowground ratio suggests that there is an influence of P on R&R foraging for P belowground. Some implications for management and restoration are, in part, that salt marshes should be evaluated and examined using information on the plant’s physiology and production both below- and aboveground.