Epibenthic megacrustaceans from the continental margin, slope and abyssal plain of the Southwestern Gulf of Mexico: Factors responsible for variability in species composition and diversity

The community structure of megacrustaceans (orders Lophogastrida, Isopoda, and Decapoda) collected in trawls on the continental margin, upper slope and abyssal plain of the southern Gulf of Mexico was studied to determine to what extent broad-scale variation in community composition and diversity was influenced by geographic regions environmental variability and depth. Trawls were collected in the Mexican Ridges, the Campeche Bank, and the Sigsbee abyssal plain. There was variability in species composition, density and diversity among geographic regions and along the depth gradient. A total of 106 species were identified and grouped in three orders; five infraorders, 40 families, and 70 genera. This study extends the known geographic ranges of the species Homolodromia monstrosa and Ephyrina benedicti. The largest number of species was recorded in the Mexican Ridges and on the upper continental shelf; lower values were found on the continental margin and in the abyssal plain. The largest densities were recorded on the continental margin in the Mexican Ridges. Megacrustaceans show in general low frequencies and low abundances in trawls, characterizing them as rare components of benthic assemblages. Contrary to an accepted paradigm about deep-sea biodiversity, the highest H′ diversity values were recorded in the Sigsbee abyssal plain, followed by values from the upper continental slope; diversity values were correlated with evenness. Canonical Redundancy analysis results showed a significant affinity to regions for 18 crustacean species; 33 species showed a significant affinity to both regions and depth zones within regions.     

Oxygen and organic carbon fluxes in sediments of the Bay of Biscay

The relationship between particulate organic carbon (POC) concentrations measured in modern sediment and fluxes of exported POC to the sediment surface needs to be understood in order to use POC content as a proxy of paleo-environmental conditions. The objective of our study was to compare POC concentrations, POC mineralization rates calculated from O₂ consumption and POC burial rates. Benthic O₂ distributions were determined in 58 fine-grained sediment cores collected at different periods at 14 stations in the southeastern part of the Bay of Biscay with depths ranging from 140 to 2800 m. Depth-dependent volume-specific oxygen consumption rates were used to assess rates of aerobic oxidation of organic matter (OM), assuming that O₂ consumption solely was related to heterotrophic activity at the sediment–water interface. Heterogeneity of benthic O₂ fluxes denoted changes in time and space of fresh organic material sedimentation. The most labile fraction of exported POC engendered a steep decrease in concentration in the upper 5 mm of vertical O₂ profiles. The rupture in the gradient of O₂ microprofile may be related to the bioturbation-induced mixing depth of fast-decaying carbon. Average diffusive O₂ fluxes showed that this fast-decaying OM flux was much higher than buried POC, although diffusive O₂ fluxes underestimated the total sediment oxygen demand, and thus the fast-decaying OM flux to the sediment surface. Sedimentary POC burial was calculated from sediment mass accumulation rate and the organic carbon content measured at the top of the sediment. The proportion of buried POC relative to total exported POC ranged at the most between 50% and 10%, depending on station location. Therefore, for a narrow geographic area like the Bay of Biscay, burial efficiency of POC was variable. A fraction of buried POC consisted of slow-decaying OM that was mineralized within the upper decimetres of sediment through oxic and anoxic processes. This fraction was deduced from the decrease with depth in POC concentration. At sites located below 500 m water depth, where the fast-decaying carbon did not reach the anoxic sediment, the slow-decaying pool may control the O₂ penetration depth. Only refractory organic material was fossilized in sedimentary records at locations where labile OM did not reach the anoxic portion of the sediment.     

Zooplankton community structure in a highly turbid environment (Charente estuary,France): Spatio-temporal patterns and environmental control

Zooplankton assemblages were studied from January 2007 to January 2008 along the salinity gradient of the Charente estuary (France). A Lagrangian survey was performed monthly at five sampling stations defined by salinity (freshwater, 0.5, 5, 15 and 25) in order to collect zooplankton and measure the main environmental parameters (concentrations of suspended particulate matter, particulate organic carbon, chlorophyll a and phaeopigments). A combination of multivariate cluster analysis, species indicator index and canonical correspondence analysis was used to relate the spatio-temporal patterns of the zooplankton assemblages with environmental drivers. The estuary was divided into three different zones by means of environmental parameters while four zooplankton assemblages were identified along the salinity gradient. The Charente estuary appeared as one of the most turbid systems in Europe, with suspended particulate matter (SPM) concentration reaching 3.5 g l⁻¹ in the Maximum Turbidity Zone (MTZ). Algal heterotrophy and microphytobenthos resuspension from the wide mudflats could be responsible for the relatively high chlorophyll a concentrations measured within this MTZ. Salinity and SPM affected significantly the spatial distribution of zooplankton species while temperature and river flow seemed to control their temporal variations. From a zooplanktonic viewpoint, the highly turbid Charente estuary seemed to match an “ecotone–ecocline” model: the succession of species assemblages along the salinity gradient matched the concept of ecocline while the MTZ, which is a stressful narrow area, could be considered as an ecotone. Although such ecoclinal characteristics seemed to be a general feature of estuarine biocenoses, the ecotone could be more system-specific and biological compartment-specific.     

Microbial Diversity in Nankai Trough Sediments at a Depth of 3,843 m

Dense populations of bivalves, primarily Calyptogena sp., were observed at cold seeps of the Nankai Trough. Bacterial input to the sediment was estimated through determination of phospholipid ester-linked fatty acid (PLFA) and DNA profiles. Results indicated a bacterial biomass of 10⁹ cells (g dry wt)^-1 while individual fatty acid profiles revealed a predominance of monounsaturated fatty acids, mainly 18:1 isomers. The presence of these fatty acids can be interpreted to reflect a response to low temperature and a predominance of psychrophilic bacteria. DNA fragments encoding bacterial ribosomal RNA small-subunit sequences (16S rDNA) were amplified by the polymerase chain reaction method using DNA extracted directly from the sediment samples. From the sequencing results, at least 19 kinds of bacterial 16S rDNAs related to mostly the Proteobacteria and a few gram-positive bacteria were identified. These results suggest that the bacterial community in the Nankai Trough sediments consists of mainly bacteria belonging to the Proteobacteria , , and subdivisions. Bacteria belonging to the and subdivisions, which are known to include epibiont and sulfate reducing bacteria, respectively, were mostly detected in the sediment obtained from inside the area of the Calyptogena community, and the -Proteobacteria may function to supply reduced sulfur to bacterial endosymbionts of Calyptogena.     

Macrofaunal density and biomass in the Campeche Canyon, Southwestern Gulf of Mexico

The composition, density and community structure of the benthic macrofauna were investigated in sediments of the Campeche Canyon in the SW Gulf of Mexico. Total macrofaunal density ranged from 9466±2736 ind m⁻² at the continental shelf station to 1550±195 ind m⁻² in the canyon. Density values significantly diminished with distance from the coast and depth; only a few stations in the center of the canyon displayed larger density values (E-37 with 4666±1530 ind m⁻², E-36 with 5791±642 ind m⁻² and E-26 with 6925±2258 ind m⁻²). Densities were positively correlated to organic nitrogen in the sediment (r=0.82) and coarse silt (r=0.43), and negatively with depth (r=−0.74) and distance from the coast (r=−0.68). At all stations, the polychaete worms contributed most to the multi-species community structure. The nematodes and Foraminifera displayed their highest densities in the center of the canyon. The biomass values declined significantly with depth. We conclude that the macrofauna density and biomass changed in response to organic matter contents in the sediment, both with distance from the coast and with depth.     

A global wave parameter database for geophysical applications. Part 1: Wave-current–turbulence interaction parameters for the open ocean based on traditional parameterizations

Ocean surface mixing and drift are influenced by the mixed layer depth, buoyancy fluxes and currents below the mixed layer. Drift and mixing are also functions of the surface Stokes drift U_ss, volume Stokes transport T_S, a wave breaking height scale H_swg, and the flux of energy from waves to ocean turbulence Φ_oc. Here we describe a global database of these parameters, estimated from a well-validated numerical wave model, that uses traditional forms of the wave generation and dissipation parameterizations, and covers the years 2003–2007. Compared to previous studies, the present work has the advantage of being consistent with the known physical processes that regulate the wave field and the air–sea fluxes, and also consistent with a very large number of in situ and satellite observations of wave parameters. Consequently, some of our estimates differ significantly from previous estimates. In particular, we find that the mean global integral of Φ_oc is 68 TW, and the yearly mean value of T_S is typically 10–30% of the Ekman transport, except in well-defined regions where it can reach 60%. We also have refined our previous estimates of U_ss by using a better treatment of the high frequency part of the wave spectrum. In the open ocean, U_ss  0.013U₁₀, where U₁₀ is the wind speed at 10 m height.     

Observations of the North Equatorial Current,Mindanao Current,and Kuroshio current system during the 2006/07 El Niño and 2007/08 La Niña

Two onboard observation campaigns were carried out in the western boundary region of the Philippine Sea in December 2006 and January 2008 during the 2006/07 El Niño and the 2007/08 La Niña to observe the North Equatorial Current (NEC), Mindanao Current (MC), and Kuroshio current system. The NEC and MC measured in late 2006 under El Niño conditions were stronger than those measured during early 2008 under La Niña conditions. The opposite was true for the current speed of the Kuroshio, which was stronger in early 2008 than in late 2006. The increase in dynamic height around 8°N, 130°E from December 2006 to January 2008 resulted in a weakening of the NEC and MC. Local wind variability in this region did not appear to contribute to changes in the current system.     

Modeling fish growth and reproduction in the context of the Dynamic Energy Budget theory to predict environmental impact on anchovy spawning duration

Spawning location and timing are critical for understanding fish larval survival. The impact of a changing environment on spawning patterns is, however, poorly understood. A novel approach is to consider the impact of the environment on individual life histories and subsequent spawnings. In the present work, we extend the Dynamic Energy Budget (DEB) theory to investigate how environment variability impacts the spawning timing and duration of a multiple-batch spawning species. The model is successfully applied to reproduce the growth and reproduction of anchovy (Engraulis encrasicolus) in the Bay of Biscay. The model captures realistically the start and ending of the spawning season, including the timing of the spawning events, and the change in egg number per batch. Using a realistic seasonal forcing of temperature and food availability derived from a bio-physical model, our simulation results show that two thirds of the total spawned mass already accumulates before the start of the spawning season and that the condition factor increases with body length. These simulation results are in accordance with previous estimations and observations on growth and reproduction of anchovy. Furthermore, we show how individuals of equal length can differ in reproductive performance according to the environmental conditions they encounter prior to the spawning season. Hatch date turns out to be key for fecundity at age-1 as it partly controls the ability to build up reserves allocated to reproduction. We suggest the model can be used to realistically predict spawning in spatially and temporally varying environments and provide initial conditions for bio-physical models used to predict larval survival.     

Integrative taxonomic description of Plakina kanaky,a new polychromatic sponge species from New Caledonia (Porifera: Homoscleromorpha)

Four similar sponges of different colors, all unknown to science, were collected in submarine caves of New Caledonia. We aimed at determining whether the four chromotypes represented different species or phenotypic variations of a unique new species. We used an integrative taxonomic approach combining morphologic, molecular and metabolomic analyses. The main traits that define these specimens are a skeleton made of monolophose, trilophose and tetralophose calthrops only, high chemical diversity and a high abundance and diversity of prokaryotic symbionts. The symbiotic community includes two unique prokaryote morphotypes, which are described for the first time in Homoscleromorpha, and appeared to be vertically transmitted. Although several features slightly differ among chromotypes, the most parsimonious conclusion was to propose a single new species Plakina kanaky sp. nov. Our phylogenetic analysis indicated the paraphyly of the Plakina genus, with P. kanaky sp. nov. belonging to a clade that includes Plakina jani and Plakina trilopha. The present work demonstrates that integrative taxonomy should be used in order to revise the entire Plakinidae family and especially the non‐monophyletic genus Plakina.     

Diet of Haplognathia ruberrima (Gnathostomulida) in a Caribbean marine mangrove

Haplognathia ruberrima is a cosmopolitan gnathostomulid species found in sulfur bacterial mats in mangroves in Guadeloupe (French West Indies). Haplognathia ruberrima presents a δ¹³C value lower than all measured meiofaunal grazers and lower than the available measured food sources of this environment. This low δ¹³C value can not be due to specific ingestion of ¹³C‐depleted methanogenic bacteria because abundances of those bacteria are reduced in surficial and deep sediments as revealed by δ¹³C of bacterial fatty acid. According to scanning electron microscope observations, no bacterial ectosymbionts were observed at the surface of the gnathostomulids, and transmission electron microscope views revealed the absence of bacterial endosymbionts. Energy‐dispersive X‐ray spectroscopy analysis detected low levels of sulfur (0.32%±0.8) in biological tissues of H. ruberrima, confirming the absence of thioautotrophic bacterial symbionts in these animals. Consequently, the low δ¹³C value of H. ruberrima can not be due to the presence of sulfur‐oxidizing symbionts but more probably to the selective and exclusive consumption of free‐living, sulfur‐oxidizing bacteria.