Differential gene expression in oyster exposed to sewage

In order to investigate the influence of domestic sewage on the gene expression of Pacific oysters Crassostrea gigas, suppression subtractive hybridization (SSH) method was employed. Oysters were sampled at a farming area and, after 10 days of acclimation in the laboratory, were exposed to untreated domestic sewage diluted 33% for 48 h. Gills of male oysters were excised for total RNA extraction. mRNA was purified and the differential gene expression was analyzed by SSH. We obtained 61 cDNA sequences but only 15 were identified, which includes fatty acid binding protein, multidrug resistance protein, omega glutathione S-transferase, cytochrome P450 isoform CYP356A1, among others. The identified genes are associated with different metabolic functions like biotransformation, membrane transport, aerobic metabolism and translational machinery, evidencing the potential toxic effects elicited by these effluents.     

Comparison of the antioxidant defense system in Crassostrea rhizophorae and Crassostrea gigas exposed to domestic sewage discharges

Oysters Crassostrea rhizophorae and Crassostrea gigas were kept for fourteen days at four sites in S?o José, SC, Brazil, chosen according to a sewage discharge contamination gradient. Enzymatic activities of CAT, GST, G6PDH and GR were evaluated in gills and digestive glands. Higher CAT activity was observed in tissues of C. rhizophorae in response to sewage contamination possibly indicating peroxisome proliferation induction. C. gigas showed elevated G6PDH activity in digestive gland, and GR in gills, after domestic sewage exposure. In conclusion, C. rhizophorae and C. gigas showed different biochemical responses after in situ exposure to domestic sewage. However, C. rhizophorae showed more significant changes in CAT suggesting that this organism could be a better monitor to this kind of effluent.     

Community structure and functional traits of mollusks associated with coastal reef macroalgae in Northeastern Brazil

This study investigated the community structure and functional traits of the mollusk fauna associated with macroalgae with different thallus morphologies in a reef environment in Northeastern Brazil. A total of 15 individuals of each species of macroalgae adhered to natural substrate and 15 individuals of Padina gymnospora detached from the substrate were collected. The structural complexity of algal habitats was measured and the associated malacofauna screened and identified. All three macroalgae differed significantly in the complexity of their habitat, with Sargassum polyceratium being the most complex. A total of 823 specimens of mollusks belonging to 22 species and 11 families were recorded, of which Columbellidae was the most represented with six species. The functional trait “size” revealed that micromollusks smaller than 10 millimeters were predominant in the community; however, individuals of larger sizes (up to 24.54 millimeters) belonging to young stages of other species were also present. Eight functional trophic groups were identified, of which “carnivorous” stood out with seven species. Six functional groups of microhabitats were identified, with intra‐specific variation in habitats, while habitat expansion was documented for species not yet recorded in association with macroalgae. The structure of the molluskan community differed among the three algae species with the greatest richness, abundance, and diversity of mollusks and functional traits occurring with S. polyceratium. Community structure differed between algae adhered to natural substrate and detached algae, with the latter having lower mollusk richness and diversity, but with greater abundance of some species that remained on algal fronds after release from the reef environment. This study reinforces the importance of algal habitat for marine invertebrate fauna, especially for micromollusks that spend their entire life cycle, or part of it, in association with macroalgae.     

The Role of Eucalyptus Globulus Forest and Products in Carbon Sequestration

This study is a contribution to the ongoing debate about the selection of the approach for carbon accounting in wood products to be used, in the future, in the national greenhouse gas inventories under the UNFCCC (United Nations Framework Convention on Climate Change). Two accounting approaches are used in this analysis: the stock-change approach and the atmospheric-flow approach. They are applied to the Portuguese Eucalyptus globulus forest sector. To achieve this objective, the fluxes of wood removed from the forest are tracked through its life cycle, which includes products manufacture (mainly pulp and paper), use and final disposal (landfilling, incineration and composting). This study develops a framework to the estimation of carbon sequestration in the forest of E. globulus, a fast growing species, more specifically, in the calculation of the conversion factors such as bark and foliage percentages and densities, used to convert wood volumes into total biomass. A mass balance approach based on real data from mills is also proposed, in order to assess carbon emissions from wood processing. The results show that E. globulus forest sector was a carbon sink, but the magnitude of the carbon sequestration differs substantially depending on the accounting approach used. The contribution of the forest ecosystem was smaller than the aggregated contribution of wood products in use and in landfills (including industrial waste), which reinforces the role that wood products play in national carbon budgets.     

An analog period method for gap-filling of latent heat flux measurements

Practically all records of eddy-covariance flux measurements are affected by gaps, caused by several reasons. In this work, we propose analog period (AP) methods for gap-filling, and test them for filling gaps of latent heat flux at five AmeriFlux sites. The essence of the methods is to look for periods in the record that bear a strong resemblance, in the variable to be filled, to the periods immediately before and after the gap. Similarity between periods is gauged by the coefficient of determination, and the search for similar periods and their ranking is straightforward. The methods are developed in a univariate version (that uses only the latent heat flux data series itself) and several multivariate ones, that incorporate sensible heat flux, ground heat flux and net radiation data. For each set of independent variables used for gap-filling, the methods are tested against an existing gap-filling procedure with similar data requirements. Thus, the univariate version is tested against the mean diurnal variation method, and the multivariate versions are tested against corresponding simple and multiple linear regression techniques that use energy-budget data, and in one case the evaporative fraction as well. In our tests, the proposed univariate version performs better than the mean diurnal variation method, and the multivariate versions perform better than simple/multiple linear regression methods. An often used available computer package, REddyProc, was also tested as a basis of comparison. In general, the proposed methods (in univariate and multivariate versions) and simple/multiple linear regressions performed better than REddyProc. For the datasets analysed, gap filling via the evaporative fraction method performed poorly.     

Isotopic composition of precipitation during strong El Niño–Southern Oscillation events in the Southeast Region of Brazil

Equatorial Pacific sea surface temperature variations interact with processes of atmospheric circulation, creating conditions for the occurrence of El Niño–Southern Oscillation (ENSO). ENSO events represent the most important interannual phenomena affecting climate patterns worldwide and causing significant socio‐economic impacts. In the Brazilian territory, ENSO leads to an increase in drought episodes in the north‐eastern region and an increase in precipitation in the southern region, whereas the effects over the south‐east region are yet not well understood. The main goal of this study is to compare variations of isotopic composition in precipitation across the south‐east portion of the Brazilian territory during two very strong ENSO events: 1997–1998 (ENSO 1) and 2014–2016 (ENSO 2). Daily isotopic records, available from the Global Network of Isotopes in Precipitation database for ENSO 1, and samples collected during ENSO 2 were used to compare the influence of both events on the isotopic composition of precipitation. Seasonal variations indicated more depleted precipitation during the wet seasons (δ¹⁸O = ?5.4 ± 4.0‰) and enriched precipitation during the dry seasons (δ¹⁸O = ?2.8 ± 2.3‰). Observed rainfall variations were associated with atmospheric large‐scale processes and moisture transport from the Amazon region, whereas extreme values (enriched or depleted) appear to be associated with particular convective and stratiform precipitation events. Overall, more depleted isotopic composition of precipitation (δ¹⁸O = ?4.60‰) and higher d‐excess (up to +15‰) were observed during the dry season of ENSO 1 when compared with ENSO 2 dry season (δ¹⁸O‰ = ?2.80‰, d‐excess lower than +14‰). The latter is explained by greater atmospheric moisture content, particularly associated with recycling of transpiration fluxes from the Amazon region, during dry season of ENSO 1. No significant differences for δ¹⁸O and δ²H were observed during the wet season; however, d‐excess from ENSO 2 was greater than ENSO 1, due to the slightly greater atmospheric moisture content and very strong upward motion observed. Our findings highlight the opportunity that environmental isotopes offer towards understanding hydrometeorological processes, particularly, the evolution of extreme climatic events of global resonance such as ENSO.     

Nepheloid layer dynamics in the northern Portuguese shelf

A general hydrographic and nephelometric survey of the NW Portuguese continental shelf and upper slope was undertaken, under winter and spring conditions. The nepheloid layer dynamics along the shelf during three cruises were controlled, principally by the following factors: (a) the hydrography of the shelf-slope waters, i.e. the nepheloid layers followed isopycnals and water masses; (b) prevalence of upwelling or downwelling circulation over the shelf; (c) dispersion of material by river discharge (mainly the Douro river); (d) resuspension of mid-shelf fine deposits induced by swell; (e) peculiar morphology with the presence of Porto Canyon and outer shelf rock outcrops.The general circulation controls the seaward extension of the nepheloid layers. In winter, under dominant downwelling conditions, an intense bottom nepheloid layer (BNL) was observed on the shelf, due to river borne particle supply and remobilization of mid-shelf muddy sediments (depth ≈100 m). In this period the BNL increased in thickness to the top of the slope, following the isopycnals. Near the shelf-break the BNL detached to form intermediate nepheloid layers (INL). Small INLs appear deeper in some areas of the slope. A surface nepheloid layer (SNL) appears in the surface water over the shelf and slope. In spring, biological particles mainly contribute to the SNL, which is separated from the BNL by a zone of clear water. In winter the SNL is restricted to the inner shelf where there are high inputs of fluvial particles.Downwelling circulation probably induces transport of shelf particles to deeper waters in the BNL. In spring, the predominant circulation was southward (upwelling), the water column was highly stratified, and dispersion of particles in the SNL was offshore.     

High-precision geochronology of Mesozoic magmatism in Macao,Southeast China:Evidence for multistage granite emplacement

Six new high precision U-Pb zircon ID-TIMS ages plus thirteen in situ high spatial resolution U-Pb zircon LA-MC-ICPMS ages are reported from Jurassic plutonic(metaluminous to weakly peraluminous biotite granites)and Jurassic to Cretaceous hypabyssal(dacites)rocks from Macao.Despite its relatively small area(~30 km^2),the new ages tightly constrain the Macao granitic magmatism to two periods ranging from 164.5±0.6 Ma to 162.9±0.7 Ma and 156.6±0.2 Ma to 155.5±0.8 Ma,separated by ca.6 Ma.Inherited zircons point to the existence of a basement with ages up to Paleo-Proterozoic and late Archean in the region.In addition,younger dacitic rocks were dated at 150.6±0.6 Ma and<120 Ma.U-Pb zircon ages and whole-rock REE data of Macao granites indicate that the first pulse is also represented in Hong Kong and Southeast(SE)China,while magmatism with the chemical characteristics of the second pulse seems to not be represented outside Macao.The two granitic magmatic pulses have distinct mineralogical and geochemical features that support their discrete nature rather than a continuum of comagmatic activity and suggest that the Macao granitic suite was incrementally assembled during a period of ca.9 Ma,a hypothesis also extendable to the neighboring Hong Kong region for a time lapse of ca.24 Ma.In Macao,the transition from granitic magmatism(Middle to Upper Jurassic)to the younger dacite dykes(Upper Jurassic to Lower Cretaceous)most likely corresponds to a change in the regional tectonic setting,from an extensional regime related with foundering of the subducting paleoPacific plate during the Early Yanshanian period to the reestablishment of a normal subduction system in SE China during the Late Yanshanian period.     

Analysis of occurrence patterns and biological factors of cetaceans based on long‐term and fine‐scale data from platforms of opportunity: Madeira Island as a case study

Management and conservation issues are addressed through the identification of areas of particular importance, which requires the acquisition of baseline information on species distribution and dynamics. These types of data are particularly difficult to obtain at high resolution for large marine vertebrates like cetaceans, given that dedicated surveys are complex and logistically expensive. This study uses daily presence–absence sighting data of cetaceans collected year‐round from whale‐watching boats to support the theory that fine‐scale data obtained from platforms of opportunity can provide valuable information on species occurrence and group dynamics. Data from 7,551 (daily) sightings comprising 22 species were collected from 3,527 surveyed days over 11 years (mean of 321 days per year, SD = 17) in the pelagic environment of Madeira Island. Cetaceans were observed on 92% of the surveyed days, and a mean of 15.4 (SD = 1.5), 8.2 (SD = 2.0) and 2.1 (SD = 1.2) species were recorded per year, month, and day, respectively. There were significant differences in the number of species per month (p < .001), with the highest diversity recorded in June. At least nine species, comprising 96% of all sightings, were found to use the Madeiran waters on a regular basis, such as the Atlantic spotted dolphin (Stenella frontalis), the short‐beaked common dolphin (Delphinus delphis), the bottlenose dolphin (Tursiops truncatus), and others featured in the Red List of the International Union for Conservation of Nature as Endangered, Vulnerable, and Data Deficient. In addition, 10 species were found to use the Madeiran waters for travelling, feeding, resting, socializing and calving, which suggests that the southern and southeastern waters of Madeira Island constitute an area of interest for cetaceans. This study characterizes the cetaceans’ community structure (occurrence, aggregation sizes, behaviours, proportion of calves, and inter‐specific relationships) of a poorly studied region, providing important information for managers. Finally, the advantages and limitations of using fine‐scale data from a type of platform of opportunity that is increasing along coastlines globally are discussed.     

Morphodynamics of structurally controlled headland-bay beaches in southeastern Brazil: A review

This paper presents a comprehensive review on the interaction between hydrodynamic processes, beach morphology and sedimentology at large scale coastal behaviour along the coastline of Santa Catarina, between Laguna and São Francisco Island, a microtidal east coast swell environment with headland and bay geomorphologies. The parabolic bay shape equation has proven to be a convenient and practical tool for studying the stability of the headland-bay beaches, tombolos, and salients in Santa Catarina. The beaches exhibit different patterns of sediment removal as a function of the degree of beach curvature. In highly curved beaches, there is a well-developed shadow zone and a range of morphodynamic conditions, from a sheltered low-energy beach adjacent to the downdrift headland to a high-energy exposed beach on the straight end of the headland-bay beach. The less curved beaches instead, tend to show more uniform behaviour since they are directly exposed to incident waves. There is no obvious relationship between average wave height and mean grain size, showing the importance of sediment source to characterize the sedimentary distribution patterns in the study area. The analysis of beaches showed that beach morphodynamics and sequence profiles for a bay–headland coast in a microtidal east coast environment is a function of geological inheritance (e.g., distance between headlands and orientation, nearshore and inner shelf morphology, coastal plain morphology, and sediment source), and hydrodynamic factors (wave conditions, oceanic wave exposure and relative tidal range).