High-throughput sequencing of 16S r RNA amplicons characterizes gut microbiota shift of juvenile sea cucumber Apostichopus japonicus feeding with three antibiotics

Sea cucumber Apostichopus.japonicus is an important marine economic species in Asian countries due to its profound nutritional and medicinal value.So far,with the rapid development of intensified artificial aquaculture of sea cucumbers,the use of antibiotics is still an inexpensive and dispensable way to treat pathogenic infections,especially during the nursery phase.However,there is little information on the effects of antibiotics on the intestinal microbiota of sea cucumber.Therefore an Illumina based sequencing method was used to examine the intestinal bacterial composition of juvenile A.japonicas following diets with three typical antibiotics(tetracycline,erythromycin.,and norfloxacin)under 15,30,and 45 d.The findings reveal that different antibiotics have distinct effects on the growth performance of juvenile sea cucumbers.However,the richness and diversity of microbiota were barely affected by antibiotics but the community composition alterations indicated that the three antibiotics exhibited their respective patterns of reshaping the intestinal bacteria of juvenile sea cucumbers.In common,the abundance of some sensitive genera with helpful functions,such as Thalassotalea,Shewanella,Sulfitobacter,and Halomonas decreased significantly with exposure to antibiotics and the abundance of multiple potential pathogenic-and suspected antibiotic-resistant microorganisms like Arcobacter,Leucothrix,and Clostridium_sensu_stricto_1 was found increased significantly in the antibiotic groups.These results suggest that low doses of antibiotics could affect the composition of the intestinal microbiota of sea cucumbers and might increase the risk of infection of the hosts.This study could help us to explore how antibacterial compounds modify the gut microbiota of sea cucumbers and provide theoretical guidance in hatchery management by scientific antibiotic use in sea cucumber mariculture.     

Morphological and molecular diagnoses of Polydora brevipalpa Zachs,1933(Annelida: Spionidae) from the shellfish along the coast of China

Shell-boring species Polydora brevipalpa Zachs, 1933 is redescribed based on morphological observations and molecular approach for future unambiguous identification. Genetic distance analyses showed that the interspecific polydorid variation(16.7%–25.6%) was at least 15 times higher than the intraspecific one(0.2%–0.9%) based on the cytochrome c oxidase subunit I(CO1) gene sequences of polydorids. However, 18 S rDNA variation pattern demonstrated a rather narrow barcoding gap, with the interspecific polydorid variation(0.5%–5.6%) being very close to the intraspecific one(0.0%–0.4%). As such, the CO1 gene exhibited better DNA barcode for identification of polydorids than the 18 S rDNA gene because of the su ciently large barcoding gaps. Analysis of molecular variance results based on CO1 gene sequences showed that most variations in sequences(97.79%) lay within groups of adult worms and egg capsules rather than between them. This indicated that egg capsules from Crassostrea gigas(Thunberg,1793) in Ningbo and Nantong were related to the adult worms from Patinopecten yessoensis(Jay, 1857) in Dalian, and both of them belonged to P. brevipalpa. This result was further supported by parsimony network analysis, which showed that egg capsules collected from dif ferent localities and adult worms shared a single haplotype. This study was the first to report both P. brevipalpa infestation on C. gigas and to utilise the known CO1 sequences of the adult polydorids to validate morphologically unidentified egg capsules or early larvae. P. brevipalpa was most possibly brought to Chinese waters through transportation of Pa. yessoensis brood stock from Japan.     

Integration of InVEST-habitat quality model with landscape pattern indexes to assess mountain plant biodiversity change: A case study of Bailongjiang watershed in Gansu Province

Journal of Geographical Sciences - Mountains in western China, hosted rich biodiversity and millions of people and inhabitant with vital ecosystem services, had experienced the most serious...     

Research on the Optimization of Capital for the Governance of Bulk Coal in Beijing-Tianjin-Hebei Region

Beijing, Tianjin and Hebei each contributed to the comprehensive governance of bulk coal to treat bulk coal pollution in a mutually beneficial way in 2017. The cooperative game theory is used in this paper to study the environmental benefits and cost effectiveness brought about by this comprehensive governance strategy, primarily focusing on the issue of how to maximize the environmental benefits by choosing an appropriate strategy since the benefits to Beijing, Tianjin and Hebei are closely related. Therefore, the linear optimization, game theory and Shapley value method in the cooperative game model are used to find the ways to minimize the total governance cost of bulk coal in the three areas. In addition, the issues of how to carry out rational distribution and transfer of governance capital among the three places are explored according to the actual amounts of consumption of bulk coal, the influence of the coal burning on the PM_2.5 and the actual cost of coal governance in Beijing, Tianjin and Hebei in 2017. The results show that the governance task in Hebei Province is the most onerous, and requires more investment than the other two cities. Thus, it requires the support from other two cities, with the amount of increased capital required of about 600 million Yuan. At the same time, the cost saved after optimization in Tianjin is calculated to be the largest, which thus can be adjusted appropriately and allocated to Hebei for the governance of bulk coal. The model constructed in this paper can not only be used to solve the issues related to bulk coal consumption in Beijing, Tianjin and Hebei, but also to carry out the effective distribution of capital, by which a win-win scenario among the three places can be achieved.     

Species Abundance Distribution Patterns of a Toona ciliata Community in Xingdoushan Nature Reserve

With the goal of model fitting species abundance distribution patterns of the tree, shrub and herb layers of the natural Toona ciliata community in Xingdoushan Nature Reserve, Enshi Autonomous Prefecture, Hubei Province, we used the data collected from the field survey and employed different ecological niche models. The models tested were the broken stick model (BSM), the overlapping niche model (ONM) and the niche preemption model (NPM), as well as three statistic models, the log-series distribution model (LSD), the log-normal distribution model (LND) and the Weibull distribution model (WDM). To determine the fitted model most suitable to each layer, the fitting effects were judged by criteria of the lowest value of Akaike Information Criterion (AIC), Chi-square and the K-S values with no significant difference (P>0.05) between the theoretical predictions and observed species abundance distribution values. The result showed: (1) The fitting suitability and goodness of fit of the tree, shrub and herb layers by using the three ecological niche models were ranked as: NPM>BSM>ONM. Of the three statistical models, by accepting the fitting results of the three layers, WDM was the best fitting model, followed by LND. By rejecting the fitting tests of the herb layer, LSD had the worst fitting effect. The goodness of the statistical models was ranked as: WDM>LND>LSD. In general, the statistical models had better fitting results than the ecological models. (2) T. ciliata was the dominant species of the tree layer. The species richness and diversity of the herb layer were much higher than those of either the tree layer or the shrub layer. The species richness and diversity of the shrub layer were slightly higher than those of the tree layer. The community evenness accorded to the following order: herb>shrub>tree. Considering the fitting results of the different layers, different ecological niche models or statistical models with optimal goodness of fit and ecological significance can be given priority to in studying the species abundance distribution patterns of T. ciliata communities.     

山东半岛南北两侧海域真核浮游生物群落特征及与环境因子的相关性分析

为了解山东半岛南北两侧的烟台崆峒岛(KTD)海域和日照东港(DG)海域真核浮游生物群落特征,采用高通量测序技术,以18S rDNA V4区为目标基因,对2017年10月至2018年7月两海域的真核浮游生物多样性进行了检测;同期测定两海域的环境因子(溶解氧、氨氮含量等10个理化指标),并与真核浮游生物丰富度做相关性分析。实验结果表明:通过高通量测序技术共鉴定出浮游生物455种,其中,KTD海域共检测出真核浮游生物36个门类424种;DG海域共检测出真核浮游生物34个门类365种。绿藻门(Chlorophyta)、硅藻门(Diatomea)是两海域浮游植物中整体丰度最高的门类。KTD海域,绿藻门各月丰度在3.0%—21.3%之间,其中2018年7月(K1807)最高,达到了21.3%;硅藻门各月丰度在2.0%—16.59%之间,其中2018年2月(K1802)最高,达到了16.59%。DG海域,绿藻门各月丰度在2.0%—12.3%之间,其中2017年11月份(D1711)最高,达到了12.3%;硅藻门各月丰度在2.0%—47.0%之间,其中1月(D1801)最高,达到了47.0%。占优势地位的浮游动物主要是节肢动物门类的物种,其每月丰度分别在6.0%—38.9%和7.6%—48.6%之间。环境因子相关性分析表明水温、DO、pH、硅酸盐、硝酸盐氮等环境因子为影响该海域浮游生物群落结构的主要因子。研究结果对了解双壳经济贝类养殖区饵料组成及其在时空的变化,对海岸带食物网、生态基础管理和海洋经济贝类养殖生产等方面提供数据支撑。     

利用稳定同位素(15N)示踪技术研究浮游藻类氮素吸收速率特征

浮游藻类对溶解态氮的吸收同化是湖泊氮生物循环和水体富营养化发生机制探讨的关键环节。本文通过~(15)N稳定同位素添加实验以铜绿微囊藻(Microcystis aeruginosa)、海链藻(Thalassiosira sp.)、卡德藻(Tetraselmis sp.)、剧毒卡尔藻(Karlodinium veneficum)以及盐水隐藻(Rhodomonas salina)为研究对象,从浮游藻类氮素吸收时间、营养盐基质以及藻种差异三个方面研究五种藻类对铵氮(NH_4~+-N)、硝氮(NO_3~--N)、尿素氮(Urea-N)三种形态氮的吸收特征。研究发现:(1)浮游藻类对三种形态氮的吸收均在1h时吸收速率最高,其氮素吸收过程为快速吸收。(2)浮游藻类优先吸收还原态氮,其中NH_4~+-N吸收速率最高,当培养周期为1d和4d时浮游藻类对NH_4~+-N吸收速率的均值分别为4.05和4.15μmol/(L·h);浮游藻类对Urea-N吸收相对偏好系数为25.18—713.42,表现出对小分子溶解态有机氮的特定偏好性。(3)不同藻种对氮素吸收具有不同特征,其中,剧毒卡尔藻对三种形态氮的吸收速率均为最高,而铜绿微囊藻的吸收速率均为最低;不同藻种不同培养时间氮素吸收速率差异与浮游藻类生长周期等特性有关。不同浮游藻类对不同形态氮素表现出吸收特异性,对水体氮负荷和浮游藻类水华优势种形成将产生重要影响。     

拟穴青蟹(Scylla paramamosain)六个地理群体肌肉氨基酸和脂肪酸的比较分析

本文对广西钦州(Gq)、福建霞浦(Fx)、浙江温州(Zw)、浙江三门(Zs)、浙江宁海(Zn)、浙江慈溪(Zc)等6个野生群体拟穴青蟹(Scylla paramamosain)肌肉进行了氨基酸及脂肪酸分析。共测定出19种游离氨基酸和26种脂肪酸。氨基酸含量在80.94—191.39mg/g之间, Gq为最高;总脂肪酸含量在7.97—11.38mg/g之间,Zn为最高。主要氨基酸为甘氨酸和精氨酸;主要脂肪酸为C20:5n3(EPA),占总脂肪酸含量的平均值为(22.47±5.84)%。各群体风味氨基酸和多不饱和脂肪酸含量丰富,占总氨基酸比例(TDAA/TFAA)和总脂肪酸比例(PUFA/TFA)分别为(53.62±5.43)%和(59.27±5.29)%。Zs群体的必需氨基酸含量及C22:6n3(DHA)均为最高。主成分分析结果表明:各群体的氨基酸与脂肪酸组成与含量相似性与地理距离分布具有一定的相关性,特别是Gq群体,在氨基酸与脂肪酸的分类中与其他群体区分比较明显。各群体风味氨基酸和多不饱和脂肪酸的聚类分析结果均表明:Zw、Zc与Gq群体较为接近,具有较强的甜味; Fx、Zn与Zs群体较为接近,具有较强的香味及不饱和脂肪酸营养价值。     

海面溢油无人机高光谱遥感检测与厚度估算方法

海上溢油是海洋国家所面临的共同问题,但至今仍没有一种可靠实用的海上溢油准确识别和油量遥感监测方法。为此,本文以无人机高光谱遥感为手段,开展了海面溢油检测与厚度估算方法研究。实验中,通过搭建室外大型水槽溢油实验装置,获取了模拟真实海洋环境条件下不同溢油量的遥感和现场光谱数据,在此基础上,分析并提取了海上溢油特征光谱波段,给出了海上溢油高光谱检测模型;针对现场实验条件下水面油膜厚度难以测定的问题,设计了3种利用总体溢油量的油膜厚度估算模型。得到如下主要结论:（1）675 nm和699 nm是海上溢油检测的有效特征波段,但对极薄的油膜没有检测能力;（2）提出了归一化溢油指数模型、反比例模型和吸收基线模型等3种海上溢油油膜厚度估算模型,其中对于薄油膜（厚度≤ 5 μm）和厚油膜（厚度>50 μm）,反比例模型是溢油厚度反演的首选也是唯一选择。对于中厚度油膜,晴朗天气条件下,归一化溢油指数模型是油膜厚度反演的首选,同时反比例模型和溢油吸收基线模型也都有较好的反演能力,而在多云天气条件下,反比例模型效果最佳。