GeoSurveillance: a GIS-based system for the detection and monitoring of spatial clusters

This article introduces a software package named GeoSurveillance that combines spatial statistical techniques and GIS routines to perform tests for the detection and monitoring of spatial clustering. GeoSurveillance provides both retrospective and prospective tests. While retrospective tests are applied to spatial data collected for a particular point in time, prospective tests attempt to incorporate the dynamic nature of spatial patterns via analyzing time-series data to detect emergent clusters as quickly as possible. This article will outline the structure of GeoSurveillance as well as describe the statistical cluster detection methods implemented in the software. It concludes with an illustration of the use of the software to analyze the spatial pattern of low birth weights in Los Angeles County, California.      

Spatial partitioning between species of the phytoplankton-feeding guild on an estuarine intertidal sand flat and its implication on habitat carrying capacity

The fishery yield of Manila clams, Ruditapes philippinarum, increased considerably in the 1970s but has decreased rapidly since the middle 1980s on extensive intertidal sand flats in Ariake Sound (Kyushu, Japan). A survey conducted in 2004 on a 3.4-km² sand flat located in the central part of the Sound (Shirakawa sand flat) revealed four dominant species: two thalassinidean shrimps (Upogebia major and Nihonotrypaea japonica), which are deep-reaching burrow dwellers with strong bioturbation activities, and two bivalves (Mactra veneriformis and R. philippinarum). All four species belong to a phytoplankton (diatom)-feeding guild. In the late 1970s, the Manila clam population prevailed in high densities over the entire sand flat, whereas its distribution was restricted to the lowest quarter of the shore in 2004. In contrast, the population sizes and zones of occurrence of the other phytoplankton feeders have expanded in the absence of R. philippinarum, perhaps an indication of competitive release. After establishment, effects of the thalassinidean shrimps on sediment stability appear to have further reduced clam abundances. Across the sand flat in 2004, wet weight population biomass estimates for N. japonica, U. major, M. veneriformis, and R. philippinarum (whole body for shrimps and soft tissue for bivalves) were 304, 111, 378, and 234 tonnes, respectively. Based on Manila clam fishery yield records from Shirakawa, the carrying capacity of the Shirakawa sand flat in the late 1970s was estimated to be two times greater than the sum value for the whole phytoplankton-feeding guild in 2004. It is hypothesized that (1) the amount of phytoplankton determines the carrying capacity for the benthic community on the Shirakawa sand flat, with both phytoplankton and benthic biomass at maxima in the late 1970s, and (2) the subsequent increases in competition for space have caused further declines in the Manila clam population biomass to approximately one-eighth of its past value.     

Similarity of electrophoretic dissolved protein spectra from coastal to pelagic seawaters

Dissolved proteins in seawater samples collected from a coastal area of Tokyo Bay, Sagami Bay and a location off the Kuroshio Current were investigated by one-dimensional sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) and high resolution two-dimensional electrophoresis (2-DE). Four to nine protein bands were detected in SDS-PAGE in the apparent molecular weight (MW) range from 12 kilo Dalton (kDa) to 49 kDa. The 2-DE technique distinguished 10 to 46 protein spots exhibiting isoelectric point (pI)/MW ranging 4.3–9.2/12–63 kDa. The elecrophoretic patterns were similar between the coastal and pelagic samples, as well as previously reported patterns from various pelagic areas. The close similarity of electrophoretic mobility on both SDS-PAGE and 2-DE gels indicates the compositional homogeneity of dissolved proteins in seawater throughout a broad range of marine environments. Proteinaceous dissolved organic matter (DOM) that was unresolved and smeared staining characteristics on both SDS-PAGE and 2-DE gels was first observed in Tokyo Bay waters in the present study and its possible sources are discussed. Although the two protein species, 48 kDa and 39 kDa proteins, have been identified as homologues of Porin P and low molecular weight-alkaline phosphatase of Pseudomonas aeruginosa PAO1, respectively, four strains of P. aeruginosa and two species of Pseudomonas spp. have been newly identified as the source organisms of these proteins using the N-terminal amino acid sequence data determined in previous studies.     

Diatoms grow faster using ammonium in rapidly flushed eutrophic Dokai Bay,Japan

The importance of the nitrogen source for phytoplankton growth in a highly eutrophic embayment, Dokai Bay, was investigated. The DIN concentration often exceeded 100 μM of which 40–70% was NH₄ ⁺. During two incubation experiments, the natural assemblage of mainly diatoms took up NH₄ ⁺ instead of NO₃ ⁻. The growth of two Skeletonema species isolated in Dokai Bay were significantly faster on NH₄ ⁺ (1.86 and 1.27 div. d⁻¹ respectively) than on NO₃ ⁻ (1.55 and 1.04 div. d⁻¹ respectively). Our results indicated that these diatoms could grow faster by using NH₄ ⁺ compared to NO₃ ⁻ in this eutrophic bay.     

Application of an ecosystem model for the environmental assessment of the reclamation and mitigation plans for seagrass beds in Atsumi Bay

An ecosystem model was used to evaluate the effects of reclaiming seagrass beds and creating artificial shallows with seagrass beds to mitigate the effects of the reclamation. The applied model can simulate the pelagic and benthic ecosystems including seagrass beds and tidal flats. The objectives of this study were (a) to investigate the likelihood of cultivating and maintaining seagrass beds in artificial shallows (Part 1), and (b) to understand the effects of the reclamation of seagrass beds and the creation of artificial shallows on the water quality in the estuary (Part 2). In Part 1, first, the nutrient turnover rates due to both biochemical and physical processes in the natural seagrass beds where reclamation is proposed were analyzed. Biological processes rather than physical processes were the most significant driving forces of nutrient cycles in seagrass beds. Second, the effects of filter feeding benthic fauna (suspension feeders) in the seagrass beds were analyzed. The scenario with suspension feeders resulted in higher transparency of the water column (8.7% decrease in the light attenuation coefficient) and an increase in nutrient supply (24.9% increase in NH₄-N in the water column) contributing to the high specific growth rate of seagrass. Third, the specific growth rate of seagrass on the proposed artificial shallows was measured. The value on the artificial shallows set at a depth of datum line minus 0.8 m (D.L. − 0.8 m) was approximately the same as that of the natural seagrass beds. In Part 2, first, water quality in the estuary was compared among the scenarios with/without natural seagrass beds and artificial shallows. Then, the defined values of the water purification capability of (a) artificial shallows with/without seagrass beds, and (b) natural seagrass beds per unit area were evaluated. The reclamation of the natural seagrass beds resulted in a decrease of the removal of phytoplankton and detritus from the pelagic system (i.e. resulted in a loss in the purification rate). In contrast, the creation of artificial shallows resulted in an increase of the removal of phytoplankton and detritus from the pelagic system (i.e. resulted in a gain in the purification rate). Based on an annual average, approximately twice as much phytoplankton was removed from the artificial shallows at the depth D.L. − 0.8 m, than at the depth, D.L. − 1.5 m, and the artificial shallows with seagrass beds removed pelagic DIN and DIP at a rate 120% higher than that without seagrass beds.     

Trends,drivers and impacts of changes in swidden cultivation in tropical forest-agriculture frontiers: A global assessment

This meta-analysis of land-cover transformations of the past 10–15 years in tropical forest-agriculture frontiers world-wide shows that swidden agriculture decreases in landscapes with access to local, national and international markets that encourage cattle production and cash cropping, including biofuels. Conservation policies and practices also accelerate changes in swidden by restricting forest clearing and encouraging commercial agriculture. However, swidden remains important in many frontier areas where farmers have unequal or insecure access to investment and market opportunities, or where multi-functionality of land uses has been preserved as a strategy to adapt to current ecological, economic and political circumstances. In some areas swidden remains important simply because intensification is not a viable choice, for example when population densities and/or food market demands are low. The transformation of swidden landscapes into more intensive land uses has generally increased household incomes, but has also led to negative effects on the social and human capital of local communities to varying degrees. From an environmental perspective, the transition from swidden to other land uses often contributes to permanent deforestation, loss of biodiversity, increased weed pressure, declines in soil fertility, and accelerated soil erosion. Our prognosis is that, despite the global trend towards land use intensification, in many areas swidden will remain part of rural landscapes as the safety component of diversified systems, particularly in response to risks and uncertainties associated with more intensive land use systems.     

Characteristics of ionic components in precipitation in Kitakyushu City,Japan

Precipitation samples were collected by filtrating bulk sampler in Kitakyushu City, Japan, from January 1988 to December 1990. Volume weighted annual mean of pH was 4.93, but the pH distribution indicated that most probable value lay in the range pH 6.0–6.4. Volume weighted annual mean concentrations of major ionic components were as follows; SO ₄ ^2– : 84.2, NO ₃ ^– : 28.1, Cl^–: 86.3, NH ₄ ⁺ : 45.5, Ca²⁺: 63.3, Mg²⁺: 27.0, K⁺: 3.4, Na⁺: 69.0 µ eq l^–1. The highest concentrations of these ionic components were observed in winter and the lowest occurred in the rainy season. The ratio of ex-SO ₄ ^2– /NO ₃ ^– exhibited the lowest ratio in summer, and the highest ratio in winter. Good correlations were obtained between Cl^– and Na⁺, ex-SO ₄ ²⁺ and ex-Ca²⁺, NO ₃ ^– and ex-Ca²⁺, and NH ₄ ⁺ and ex-SO ₄ ^2– , respectively. However, no correlation between Cl^– and Na⁺ with Ca²⁺ was observed. The relationship of H⁺ with (ex-SO ₄ ^2– + NO ₃ ^– ) - (ex-Ca²⁺ + NH ₄ ⁺ ) indicated positive correlation.     

Seismic-response-controlled structure with active mass driver system. Part 2: Verification

An Active Mass Driver (AMD) system is proposed to suppress actively the response of a building to irregular external excitations such as earthquakes and typhoons.¹ This system has been introduced to an actual ten-storey office building constructed in Tokyo in August, 1989. The proposed analytical methods utilize circuits of the system and mechanical characteristics to understand the real control effect of the system. Simulation analyses are also performed to verify the analytical model and the control effect during observed earthquakes.     

Magma in forearcs: implication for ophiolite generation

Forearc areas (“non-volcanic” arcs) of contemporary island arcs at convergent plate boundaries contain magmatic rocks. Geological evidence, seismic profiles, heat flow data, density considerations and petrological and geochemical arguments suggest that a forearc tholeiitic association (FAT) (containing high-Mg calc-alkaline andesites) is present in “non-volcanic” arcs at some stage of island-arc development. The fractionated, as well as primitive magma, is unable to penetrate low-density sediments and underplates thick piles of unconsolidated accreting rocks. The underplating causes upwelling. The occurrence of magma in forearcs provides an alternative interpretation for the tectonic setting of some ophiolitic masses. Rather than “ocean-ridge formation” and later “obduction” it offers an autochthonous (island-arc bound and geologically-substantiated) interpretation for the ophiolite suite.     

Origin of sector trilling in cordierite in Daimonji hornfels,Kyoto, Japan

Sector trilling of cordierite in hornfels in the inner part of a contact aureole at Daimonji, Japan is a new type which consists not only of six (100) sectors (a-sectors) forming trilling, but also of (001) sectors (c-sectors) and high-index sectors (h-sectors). Complex twins within and among these sectors were studied from a viewpoint of a pseudo twin. The complex texture originated from both growth and transformation processes. The c-sector consists of three groups of domains which are related by a pseudo twin. This intrasector pseudo twin indicates that the initial phase of the c-sector was hexagonal cordierite (indialite) which later transformed to orthorhombic. The a-sector is related to adjacent sectors by a rotation of 120° around the c axis, resulting in an intersector pseudo twin. The a-sector is interpreted to have formed by overgrowth of orthorhombic cordierite on prism faces of indialite. The h-sector with the dendritic texture is also interpreted to have grown as orthorhombic cordierite. In hornfels in the middle part of the aureole, cordierites with sector trilling often coexist with single crystals of cordierite, and the sector trilling has no c- and h-sectors. This trilling type suggests that nucleation of indialite was subsequently followed by growth of orthorhombic cordierite in its stable field.