Biotechnology and the future of rice production

Rice breeders are looking to basic bioscience and biotechnology for help in the solution of important problems that conventional breeding methods have not satisfactorily solved. Among these problems are durable resistance to recalcitrant pests and diseases such as yellow stem borer, gall midge, sheath blight, bacterial leaf blight, blast and tungro virus, and tolerance of abiotic stresses such as drought, salinity and submergence. Nutrient use efficiency, yield potential and efficient hybrid rice production are additional problems for which biotechnology solutions are envisioned. IRRI's biotechnology program emphasizes techniques such as molecular markers, anther culture and DNA fingerprinting that accelerate conventional breeding, and also techniques such as wide hybridization and genetic engineering that broaden the gene pool that breeders can exploit. IRRI's experience in adopting and adapting biotechnology for use in its own breeding program is shared with the national agricultural research systems of Asia through the Asian Rice Biotechnology Network.     

The effect of specimen size and stress rate for the Brazilian test—A statistical analysis

Summary The Brazilian test is a widely accepted method for the determination of the tensile strength of intact rock. Specifications for the Brazilian tensile strength test have been established by the American Society for Testing and Materials (ASTM), ASTM D 3967-86 and a suggested approach is provided by the International Society for Rock Mechanics (ISRM). The ASTM and ISRM allow a relatively wide range of values for specimen geometry defined in terms of length to diameter ratio and loading rates defined as either time to failure or stress rate.A statistical study was carried out on a coal measure sandstone to determine whether the tensile strength determined by the Brazilian test is independent of the specimen geometry and the stress rate.     

Incompatible element and isotopic evidence for tectonic control of source mixing and melt extraction along the Central American arc

The Sr and Nd isotopic ratios of Central American volcanics can be described by the mixing of four components, marine sediment from DSDP Site 495, MORB-source mantle (DM), EMORB-source mantle (EM), and continental crust. Most of the isotopic data define a trend between EM and a modified mantle (MM) formed as a mixture of DM and less than 0.5% marine sediment, or fluid derived there from. The MM to EM trend is equally apparent in the incompatible-element data and is most clearly seen in a Ba/La versus La/Yb plot. A hyperbolic trend connects high Ba/La and low La/Yb at the MM end of the trend to low Ba/La and high La/Yb at the EM end. Smooth regional variations in incompatible-element and isotopic ratios correlate with the dip of the subducted slab beneath the volcanic front and the volume of lava erupted during the last 100,000 years (volcanic flux). Steep dip and low flux characterize the MM end-member and shallow dip and high flux characterize the EM end-member. The simplest model to explain the linked tectonic and geochemical data involves melting in the wedge by two distinct mechanisms, followed by mixing between the two magmas. In one case, EM magma is generated by decompression of EM plus DM asthenosphere, which is drawn in and up toward the wedge corner. EM mantle is preferentially melted to small degrees because of the presence of low melting components. The second melt is formed by release of fluid from the subducted slab beneath the volcanic front to form MM magma. Mixing between EM and MM magmas is controlled by subduction angle, which facilitates delivery of EM magma to the volcanic front at low-dip angles and impedes it at steep-dip angles.     

Rock mass characterization using photoanalysis

Summary Rock formations are distinguished from each other by measuring first the properties of the intact rock, and second those of the jointing. Whereas simple methods are available for measuring intact rock properties, those available for measuring jointing remain slow, expensive, and sometimes dangerous. Digitized photographs (photoanalysis) may provide a solution. In this paper, the new techniques of photoanalysis are reviewed together with applications, promising areas for research, and also some obstacles that remain to be overcome. Aspects of the rock mass that lend themselves to photoanalytical measurement include those of individual joints, such as persistence, orientation and roughness, and those relating to the mass as a whole, such as block size and the spacing or intensity of jointing. Photoanalysis can also be applied to measurement of blasting. It allows characterization of the rock about to be blasted, helping the engineer to predict fragmentation and to design an appropriate blasting pattern. Afterwards, the same methods can be used to measure fragmentation, overbreak and backbreak, for quality control and for diagnosis of problems.Presented at the 28th US ROck Mechanics Symposium, Tucson, Arizon, 29 June–1 July 1987.     

Release of organic nitrogen compounds from Kerogen via catalytic hydropyrolysis

High hydrogen pressure pyrolysis (hydropyrolysis) was performed on samples of solvent extracted Kimmeridge Clay Formation source rock with a maturity equivalent to ca. 0.35% vitrinite reflectance. We describe the types and distributions of organic nitrogen compounds in the pyrolysis products (hydropyrolysates) using GC-MS. Compounds identified included alkyl-substituted indoles, carbazoles, benzocarbazoles, quinolines and benzoquinolines. The distributions of the isomers of methylcarbazoles, C₂-alkylcarbazoles and benzocarbazoles in the hydropyrolysates were compared to a typical North Sea oil. The hydropyrolysates compared to the North Sea oil, showed increased contributions from alkylcarbazole isomers where the nitrogen group is "exposed" (no alkyl substituents adjacent to the nitrogen functionality) and appreciable levels of benzo[b]carbazole relative to benzo[a]- and benzo[c]carbazoles. Hydropyrolysis is found to be an ideal technique for liberating appreciable quantities of heterocyclic organic nitrogen compounds from geomacromolecules. The products released from the immature Kimmeridge Clay are thought to represent a potential source of nitrogen compounds in the bound phase (kerogen) able to contribute to the free bitumen phase during catagenesis.     

Direct visualization of clay microfabric signatures driving organic matter preservation in fine-grained sediment

We employed direct visualization of organic matter (OM) sequestered by microfabric signatures in organo-clay systems to study mechanisms of OM protection. We studied polysaccharides, an abundant class of OM in marine sediments, associated with the nano- and microfabric of clay sediment using a novel application of transmission electron microscopy, histochemical staining (periodic acid-thiosemicarbazide-silver proteinate), and enzymatic digestion techniques. We used two experimental organo-clay sediment environments. First, laboratory-consolidated sediment with 10% chitin (w/w) added was probed for chitin before and after digestion with chitinase. Second, fecal pellets from the polychaete Heteromastus filiformis were used as a natural environment rich in clay and polysaccharides. Sections of this material were probed with silver proteinate for polysaccharides before and after digestion with a mixture of enzymes (amylase, cellulase, chitinase, dextranase, and pectinase). In both environments, chitin or other polysaccharides were found within pores, bridging clay domains, and attached to clay surfaces in undigested samples. Digested samples showed chitin or polysaccharides more closely associated with clay surfaces and in small pores. Our results imply protective roles for both sorption to clay surfaces and encapsulation within clay microfabric signatures.     

A sample preparation guide for clay-rich carbonaceous chondrites

The matrix of the C2-ungrouped Tarda meteorite contains abundant smectite minerals that swell and crumble when exposed to polar liquids, causing the sample to rapidly slake. This phenomenon presents a serious challenge when polishing the meteorite, as common polishing liquids used on carbonaceous chondrites, such as water, ethanol, ethylene glycol, and isopropyl alcohol, are polar and will cause the sample to swell, making it unsuitable for some analyses. Hexane and mineral oil are nonpolar liquids that were found to not induce swelling on highly expansive montmorillonite-clay analog material and were effectively integrated into a polishing procedure for Tarda. Here, we detail a procedure for mounting, cutting, and polishing the Tarda meteorite to prepare a surface that is suitable for a variety of sensitive techniques, such as electron microprobe analysis. This work offers a practical methodology for the preparation of other clay-rich samples, which may include the recently returned Ryugu and Bennu materials.     

Developmental evaluation of a potential non-steroidal estrogen: triclosan.

Triclosan is an antibacterial agent commonly used in industry and often detected in waste-water effluent. The potential of triclosan to act as an endocrine disruptor was examined because its chemical structure closely resembles known non-steroidal estrogens (e.g. DES, bisphenol A). Japanese medaka fry (Oryzias latipes) were exposed for 14 days beginning 2 days post-hatch to triclosan (100, 10, 1 micrograms/l), 17-beta estradiol (E2; 1 microgram/l), or a solvent control (ethanol). Two months post-exposure, the phenotypic sex of each adult was assessed visually using sexually dimorphic fin shape and size. The proportion of females in each group was similar for triclosan-exposed animals and solvent-treated controls (ethanol 53%, 1 ppb 58%, 10 ppb 45%, 100 ppb 36%) although E2 treatment did produce 92% female adults. Sexually dimorphic fin traits were quantified to look for potential effects of triclosan and E2 on the development of secondary sexual characters. These results do not support the hypothesis that triclosan is potently estrogenic. However, changes in fin length and non-significant trends in sex ratio suggest triclosan is potentially weakly androgenic.