Pfiesteria shumwayae (Pfiesteriaceae) in New Zealand

Pfiesteria shumwayae Steidinger et Burkholder is now known to be present in New Zealand and occurs in estuaries around the country. The presence of Pfiesteria was initially determined by a polymerase chain reaction (PCR)‐based detection assay, using oligonucleotide primers targeted at ribosomal DNA extracted from estuarine water and sediments. Presence was confirmed by isolation from fresh sediments in the presence offish (Oreochromis mossambicus), followed by identification by scanning electron microscopy. The New Zealand isolates of P. shumwayae were ichthyotoxic in bioassays, but there is no historic evidence offish kills in New Zealand associated with the dinoflagellate.     

A community-wide intercomparison exercise for the determination of dissolved iron in seawater

The first large-scale international intercomparison of analytical methods for the determination of dissolved iron in seawater was carried out between October 2000 and December 2002. The exercise was conducted as a rigorously “blind” comparison of 7 analytical techniques by 24 international laboratories. The comparison was based on a large volume (700 L), filtered surface seawater sample collected from the South Atlantic Ocean (the “IRONAGES” sample), which was acidified, mixed and bottled at sea. Two 1-L sample bottles were sent to each participant. Integrity and blindness were achieved by having the experiment designed and carried out by a small team, and overseen by an independent data manager. Storage, homogeneity and time-series stability experiments conducted over 2.5 years showed that inter-bottle variability of the IRONAGES sample was good (< 7%), although there was a decrease in iron concentration in the bottles over time (0.8–0.5 nM) before a stable value was observed. This raises questions over the suitability of sample acidification and storage.     

Method for comparing fish growth curves

The method of comparing growth curves that is described in this paper consists of describing growth for the ith group by the equation Li(t) = ai + bi r^t, which is linear in the two parameters ai and bi, and subsequently using the analysis of variance to compare the curves. The advantages of the linear growth equation over the von Bertalanffy equation, l i (t) ⁼ ai + bi r^t i, are easier analysis and a much simpler interpretation of the differences in the parameters in terms of growth rate and maximum size. An example comparing the growth of male and female red gurnard Chelidonichthys kumu from four areas within the Hauraki Gulf is given.     

Impact of dynamic feedbacks between sedimentation,sea-level rise,and biomass production on near-surface marsh stratigraphy and carbon accumulation

Salt marshes accrete both organic and inorganic sediments. Here we present analytical and numerical models of salt marsh sedimentation that, in addition to capturing inorganic processes, explicitly account for above- and belowground organic processes including root growth and decay of organic carbon. The analytical model is used to examine the bias introduced by organic processes into proxy records of sedimentation, namely ¹³⁷Cs and ²¹⁰Pb. We find that accretion rates estimated using ²¹⁰Pb will be less than accretion rates estimated using the ¹³⁷Cs peak in steadily accreting marshes if (1) carbon decay is significant and (2) data for ²¹⁰Pb extend below the ¹³⁷Cs peak. The numerical model expands upon the analytical model by including belowground processes such as compaction and root growth, and by explicitly tracking the evolution of aboveground biomass and its effect on sedimentation rates. Using the numerical model we explore how marsh stratigraphy responds to sediment supply and the rate of sea-level rise. It is calibrated and tested using an extensive data set of both marsh stratigraphy and measurements of vegetation dynamics in a Spartina alterniflora marsh in South Carolina, USA. We find that carbon accumulation in marshes is nonlinearly related to both the supply of inorganic sediment and the rate of sea-level rise; carbon accumulation increases with sea-level rise until sea-level rise reaches a critical rate that drowns the marsh vegetation and halts carbon accumulation. The model predicts that changes in carbon storage resulting from changing sediment supply or sea-level rise are strongly dependent on the background sediment supply: if inorganic sediment supply is reduced in an already sediment poor marsh the storage of organic carbon will increase to a far greater extent than in a sediment-rich marsh, provided that the rate of sea-level rise does not exceed a threshold. These results imply that altering sediment supply to estuaries (e.g., by damming upstream rivers or altering littoral sediment transport) could lead to significant changes in the carbon budgets of coastal salt marshes.     

Honey, I cooled the cods: Modelling the effect of temperature on the structure of Boreal/Arctic fish ecosystems

Historically colder regions of the North Atlantic had fisheries dominated by only a few fish species; principally cod and capelin. Possible population dynamic mechanisms that lead to such dominance are investigated by considering how a charmingly simple published multispecies model of the North Sea would react if the system operated at a lower temperature. The existing model equations were modified to describe temperature effects on growth, fecundity and recruitment and the model was rerun based on typical temperatures for the North Sea and a colder system. The results suggest that total fish biomass in the colder system increases but the community is more vulnerable to a given rate of fishing mortality. In the colder system, within species density dependence is reduced but relative predation rates are higher. Consequently, intermediate-sized species are vulnerable to relatively high levels of predation throughout their life history and tend to be excluded, leading to a system dominated by small and large species. The model helps to explain how temperature may govern coexistence and competitive exclusion in fish communities and accounts for the observed dominance of small and large species in Boreal/Arctic ecosystems.     

The role of Coriolis in sandbank formation due to a headland/island system

Tidal flow past a headland was modelled and the resulting sandbank formation due to bedload transport by eddy systems was examined with particular emphasis on the role of Coriolis. The headland configuration was extended to the more complex case of a headland with a detached island and the role of Coriolis in sandbank formation was again examined. In the headland case, the contribution of Coriolis resulted in the expected change in bed level at the centre of the residual eddies (positive contribution for the cyclonic eddy and negative change for the anticyclonic eddy). In the headland/island case, the role of Coriolis in the resulting bed level change was a function of eddy shedding from the island, defined by the island wake parameter. When eddy shedding occurred, the inclusion of Coriolis had a large magnitude effect on creating flood/ebb sandbank asymmetry. When eddies remained attached to the island, Coriolis had a minor role in the magnitude of this asymmetry.     

Fine‐scale diet of the Australian sea lion (Neophoca cinerea) using DNA‐based analysis of faeces

We applied DNA‐based faecal analysis to determine the diet of female Australian sea lions (n = 12) from two breeding colonies in South Australia. DNA dietary components of fish and cephalopods were amplified using the polymerase chain reaction and mitochondrial DNA primers targeting the short (~100 base pair) section of the 16S gene region. Prey diversity was determined by sequencing ~50 amplicons generated from clone libraries developed for each individual. Faecal DNA was also combined and cloned from multiple individuals at each colony and fish diversity determined. Diets varied between individuals and sites. Overall, DNA analysis identified a broad diversity of prey comprising 23 fish and five cephalopod taxa, including many species not previously described as prey of the Australian sea lion. Labridae (wrasse), Monacanthidae (leatherjackets) and Mullidae (goat fish) were important fish prey taxa. Commonly identified cephalopods were Octopodidae (octopus), Loliginidae (calamary squid) and Sepiidae (cuttlefish). Comparisons of fish prey diversity determined by pooling faecal DNA from several samples provided a reasonable but incomplete resemblance (55–71%) to the total fish diversity identified across individual diets at each site. Interpretation of diet based on the recovery of prey hard‐parts identified one cephalopod beak (Octopus sp.) and one fish otolith (Parapriacanthus elongatus). The present study highlights the value of DNA‐based analyses and their capabilities to enhance information of trophic interactions.