The Radial Basis Functions Method for Improved Numerical Approximations of Geological Processes in Heterogeneous Systems

Mathematical Geosciences - A robust, high order modeling approach is introduced, based on the finite difference-based radial basis functions method, for solving the groundwater flow equation in the...     

Electron tunneling properties of outer-membrane decaheme cytochromes from Shewanella oneidensis

We have characterized the outer-membrane decaheme cytochromes OmcA and MtrC from Shewanella oneidensis MR-1 at the single-molecule level using scanning tunneling microscopy (STM) and tunneling spectroscopy (TS). These cytochrome proteins are of great interest because they are thought to mediate bacterial electron transfer reactions in anoxic waters that control the reductive dissolution of oxide minerals. In our study, to characterize the electron transfer properties of these proteins on a model surface, the purified cytochromes were chemically immobilized as molecular monolayers on Au(111) substrates via a recombinant tetra-cysteine sequence as verified by X-ray photoelectron spectroscopy. Atomic force microscopy images confirm the monolayer films were ∼5-8 nm thick which is consistent with the apparent lateral dimensions of individual cytochrome molecules obtained with STM. Current-voltage TS of single cytochrome molecules revealed that OmcA and MtrC have different abilities to mediate tunneling current despite having otherwise very similar molecular and biochemical properties. These observations suggest that, based on their electron tunneling properties, the two cytochromes could have specific roles during bacterial metal reduction. Additionally, this study establishes single-molecule STM/TS as an effective means for revealing insights into biogeochemical redox processes in the environment.     

Potentiality of Paleocene source rocks and their contribution in generating the accumulated oil in the Eocene Pila Spi Reservoir in Taq Taq Oil Field, Kurdistan Region, Iraq

The organic matters within the Paleocene Aaliji and Kolosh Formations in the well TT-04, Taq Taq Oil Field in Kurdistan Region, NE Iraq have been studied optically and also analytically by means of pyrolysis, Gas Chromatography (GC), and Gas Chromatography/Mass Spectrometry (GC/MS). Amorphous organic matters seemed to be the dominant component of the extracted organic matters within the studied section with an obvious increase of the Phytoclasts at the upper part of Kolosh Formation. Thermal Alteration Index, vitrinite reflectance, pyrolysis, and gas chromatography data all indicated the maturity of the lower part from the studied layers (known generally as Aaliji/Kolosh) and within the early stages of oil generation. Oil–source correlation indicates the possibility of contribution of the Paleocene source rocks in generating the accumulated oil in the Eocene Pila Spi reservoir in the field which also appeared to be a mature and of marine-to-mixed carbonate source. Oil–oil correlation between the oil in Pila Spi and the oil in the Upper Cretaceous reservoirs showed the possibility of existence of more than one source for the two oils. GC/MS analysis for the Pila Spi oil indicated the effect of biodegradation which may be considered as one of the reasons for being the American Petroleum Institute (API) of this oil about 24° while the oil in the Cretaceous reservoirs is of more than 47° API.     

Interannual variability of tropical cyclone activity along the Pacific coast of North America

The interannual variability of near-coastal eastern North Pacific tropical cyclones is described using a data set of cyclone tracks constructed from U.S. and Mexican oceanic and atmospheric reports for the period 1951-2006. Near-coastal cyclone counts are enumerated monthly, allowing us to distinguish interannual variability during different phases of the May-November tropical cyclone season. In these data more tropical cyclones affect the Pacific coast in May-July, the early months of the tropical cyclone season, during La Niña years, when equatorial Pacific sea surface temperatures are anomalously cool, than during El Niño years. The difference in early season cyclone counts between La Niña and El Niño years was particularly pronounced during the mid-twentieth century epoch when cool equatorial temperatures were enhanced as described by an index of the Pacific Decadal Oscillation. Composite maps from years with high and low near-coastal cyclone counts show that the atmospheric circulation anomalies associated with cool sea surface temperatures in the eastern equatorial Pacific are consistent with preferential steering of tropical cyclones northeastward toward the west coast of Mexico.     

Geochemistry of lower Jurassic shales of the Shemshak Formation, Kerman Province, Central Iran: Provenance, source weathering and tectonic setting

Lower Jurassic shales of the Shemshak Formation of Kerman Province, Central Iran, were analyzed for major and selected trace elements to infer their provenance, intensity of palaeoweathering of the source rocks and tectonic setting. Plots of shales on Al₂O₃ wt.% versus TiO₂ wt.% diagram and Cr (ppm) versus Ni (ppm) diagram indicate that acidic (granitic) rocks constitute the source rocks in the provenance. Average CIA, PIA and CIW values (84%, 92%, 93%, respectively) imply intense weathering of the source material. Plots of shales on bivariate discriminant function diagram reveal an active continental margin setting for the provenance. The inferred tectonic setting for the Lower Jurassic shales of the Shemshak Formation of Kerman Province is in agreement with the tectonic evolutionary history of the Central Iran during the Jurassic period.     

Structural and Morphological Features of the Participation of Microorganisms in the Formation of Nb–REE–Rich Ores of the Tomtor Field (Russia)

Doklady Earth Sciences - Data indicating the important role of microorganisms in the redistribution of REEs in the weathering crust and the decisive role in the concentration of REEs during the...     

Ultrahigh-pressure metamorphism in the forbidden zone: the Xugou garnet peridotite, Sulu terrane, eastern China

The Xugou garnet peridotite body of the southern Sulu ultrahigh‐pressure (UHP) terrane is enclosed in felsic gneiss, bounded by faults, and consists of harzburgite and lenses of garnet clinopyroxenite and eclogite. The peridotite is composed of variable amounts of olivine (Fo₉₁), enstatite (En_92?93), garnet (Alm_20?23Prp_53?58Knr_6?9Grs_12?18), diopside and rare chromite. The ultramafic protolith has a depleted residual mantle composition, indicated by a high‐Mg number, very low CaO, Al₂O₃ and total REE contents compared to primary mantle and other Sulu peridotites. Most garnet (Prp_44?58) clinopyroxenites are foliated. Except for rare kyanite‐bearing eclogitic bands, most eclogites contain a simple assemblage of garnet (Alm_29?34Prp_32?50Grs_15?39) + omphacite (Jd_24?36) + minor rutile. Clinopyroxenite and eclogite exhibit LREE‐depleted and LREE‐enriched patterns, respectively, but both have flat HREE patterns. Normalized La, Sm and Yb contents indicate that both eclogite and garnet clinopyroxenite formed by high‐pressure crystal accumulation (+ variable trapped melt) from melts resulting from two‐stage partial melting of a mantle source. Recrystallized textures and P–T estimates of 780–870 °C, 5–7 GPa and a metamorphic age of 231 ± 11 Ma indicate that both mafic and ultramafic protoliths experienced Triassic UHP metamorphism in the P–T forbidden zone with an extremely low thermal gradient (< 5 °C km^?1), and multistage retrograde recrystallization during exhumation. Develop of prehnite veins in clinopyroxenite, eclogite, felsic blocks and country rock gneiss, and replacements of eclogitic minerals by prehnite, albite, white mica, and K‐feldspar indicate low‐temperature metasomatism.     

Simulation of scree‐slope dynamics: investigating the distribution of debris avalanche events in an idealized two‐dimensional model

We present a two‐dimensional model of the development of scree slopes using the discrete‐element method. We concentrate on the dynamics of the accumulating debris at the cliff foot rather than on the failure modes of the cliff‐face or shape of the underlying rock surface. The evolution of this unconsolidated material is intermittent and systematically changing over time, with an early high disturbance regime, dominated by a characteristic event size (where 65% of particles in the debris are in motion to some extent), replaced at later times by many shallow slides interspersed with infrequent large events that involve motion through almost the full scree depth. These large slides lead to a stratigraphy in which the layers of material are stretched almost horizontal near the base of the slope. The scree surface thus shows a gradient in age with most recent rock‐fall close to the cliff and the oldest rock‐fall debris outcropping at the foot. The final surface slope tends to show little curvature, and the final mean slope is well correlated with the angle of internal friction of the particles, although the change is very small over a wide range of friction angles [final slope (in degrees relative to horizontal) ~ 0.043 × internal friction angle + 17.49, with a correlation coefficient of 0.89, p‐value 0.0001]. Some weak size‐segregation of the debris is found, but this seems to have little to do with individual particles bounding down the slope. The shape of the rock core agrees largely with the analytic forms given by Fisher–Lehmann and Bakker–Le Heux expressions, but the original simple Fisher quadratic can give the best fit. Overall the evolution shows a remarkable insensitivity to the model parameters, suggesting that the controls on dry scree‐slope evolution are primarily geometric in character. Copyright © 2014 John Wiley & Sons, Ltd.     

The electron pressure in the outer atmosphere of ε Eri (K2 V)

Observations of ε Eri (K2 V) have been made with the Space Telescope Imaging Spectrograph on the Hubble Space Telescope . The spectra obtained show a number of emission lines which can be used to determine, or place limits on, the electron density and pressure. Values of the electron pressure are required in order to make quantitative models of the transition region and inner corona from absolute line fluxes, and to constrain semi-empirical models of the chromosphere. Using line flux ratios in Si  iii and O  iv a mean electron pressure of P _e= N _e T _e=4.8×10¹⁵ cm⁻³ K is derived. This value is compatible with the lower and upper limits to P _e found from flux ratios in C  iii , O  v and Fe  xii . Some inconsistencies which may be because of small uncertainties in the atomic data used are discussed.     

Experimental Studies of the Dynamic Interaction between Model Channel Forms and Flow

Interaction between water flow and ridge bedforms has been studied. The results of experimental studies of velocity distribution over ridge bedforms in a hydraulic laboratory flume are given. The distribution of pressure along the contour of a rigid model ridge, determined in an aerodynamic canal, is also given.