Evidence of the restricted gene flow within a small spatial scale in the Japanese common intertidal goby Chaenogobius annularis

Elucidating the scale of gene flow among populations is an important challenge for understanding the ecological dynamics and local adaptation of marine organisms. We assessed whether gene flow is restricted even at a small spatial scale in the Japanese common intertidal goby Chaenogobius annularis, using highly polymorphic DNA markers, involving the mitochondrial DNA (mtDNA) control region and 15 microsatellite DNA (msDNA), because past ecological studies have suggested low dispersal ability for rocky intertidal fishes. We found significant heterogeneities between four neighboring local populations by both mtDNA and msDNA analyses. In addition, no genetic heterogeneity was detected by either method across generations within a population; it was considered that such genetic differentiation is retained across generations and that the gene flow of this species is restricted to within a radius of a few kilometers. This is the first report showing a clear genetic subdivision in rocky intertidal fish.     

‘Thailand was a desert' during the mid‐Cretaceous: Equatorward shift of the subtropical high‐pressure belt indicated by eolian deposits (Phu Thok Formation) in the Khorat Basin,northeastern Thailand

The Tibetan Plateau is a key factor in controlling the present‐day climate and atmospheric circulation pattern in Asia. The pattern of atmospheric circulation after the uplift of the plateau is well known, whereas direct evidence is lacking regarding the nature of the circulation pattern prior to the uplift. The distribution of desert directly reflects the position of the subtropical high‐pressure belt, and the prevailing surface‐wind pattern recorded in desert deposits reveals the position of its divergence axis. Cretaceous eolian sandstone of the Phu Thok Formation is extensively exposed in the northern Khorat Basin, northeastern Thailand. We conducted a sedimentological study on this formation to reconstruct temporal changes in the latitude of the subtropical high‐pressure belt in low‐latitude Asia during the Cretaceous. Spatio‐temporal changes in the paleo‐wind directions recorded in the Phu Thok Formation reveal that the Khorat Basin mainly belonged to the northeast trade wind belt and subtropical high‐pressure belt was situated to the north of the Khorat Basin during the initial stages of deposition, shifted southward to immediately above the basin during the main phase of deposition, and then shifted northward again to the north of the basin during the final stages of deposition. The paleomagnetic polarity sequence obtained for the Phu Thok Formation comprises three zones of normal polarity and two of reversed polarity, correlating to chrons M1n to C34n of the geomagnetic polarity time scale. This result suggests that the Phu Thok Formation is mid‐Cretaceous in age (from c. 126 Ma to c. 99–93 Ma), similar to the age of eolian sandstone in the Sichuan Basin, southern China (the Jiaguan Formation). These results, in combination with paleo‐wind direction data, suggest the development of low‐latitude desert and an equatorward shift of the subtropical high‐pressure belt (relative to the present‐day) in Asia during the mid‐Cretaceous.     

Interannual variability of CFC-11 absorption by the ocean: an offline model study

The global ocean Chlorofluorocarbon (CFC-11) was simulated in an offline model driven by re-analysis ocean currents in order to identify the mechanisms of interannual to interdecadal variability of air?Csea CFC fluxes. The model was forced with the observed anthropogenic perturbations of atmospheric CFC-11 from the post industrial period (1938) following the OCMIP-II flux protocols along with the observed winds from 1960 to 1999 in the formulation of surface gas exchanges. The model ocean CFC-11 inventories, at the end of 1990s, accounted approximately 1% of the total atmospheric CFC-11, which is consistent with the corresponding observations. The mid-to-high latitude oceans were venue for strong (weak) oceanic sinks (sources) of CFC-11 during the winter (summer) months. The Southern Ocean (south of 40°S) and the North Atlantic (north of 35°N) provided two largest sinks of CFC-11, through which 31.4 and 14.6% of the global ocean CFC-11 entered, respectively. The eastern tropical Pacific Ocean exhibited large interannual variability of CFC-11 flux with a strong (weak) sink during La Ni?a (El Ni?o) years and represented 36% of the global CFC-11 flux variability. The North Atlantic and Southern Ocean were found as regions of large sink efficiency: a capacity to sink more CFC than outsource, although it reduced by 80 and 70%, respectively, in the last 40?years compared to 1960. The sink to source ratio of global ocean CFC-11 fluxes were reduced from 90 to 50% in the last 40?years. This indicates a saturation of CFC in the above-thermocline subsurface that makes the upper ocean less efficient in absorbing CFC in recent decades. A positive trend in CFC sink is now limited to the Southern Ocean, central tropical Pacific and western boundary current regions which possess active upwelling of old water with long time since last atmospheric contact. However, a globally averaged trend was a reduced CFC-11 sink, by emitting 30% of the total ocean CFC-11 that was absorbed during last 40?years.     

Importance of intracellular Fe pools on growth of marine diatoms by using unialgal cultures and on the Oyashio region phytoplankton community during spring

We report on the ability for luxury Fe uptake and the potential for growth utilizing intracellular Fe pools for 4 coastal centric diatom isolates and in situ phytoplankton assemblages, mainly composed of diatoms. Iron uptake of the diatom isolates and natural phytoplankton assemblages in the Oyashio region during spring blooms were prevented by adding hydroxamate siderophore desferrioxamine B (DFB). After the addition of DFB, intracellular Fe in the diatom isolates supported 2.4–4.2 cell divisions with 1.2–2.6 Chl a doublings. The intracellular Fe was primarily used for cell generation rather than Chl a production, leading to a reduction in the Chl a cell quota in the Fe-starved cells with time. The metabolic properties of the Fe-starved cells with their cell morphologies were different among species or genera. An on-deck incubation experiment also exhibited 1.9 cell divisions and 0.81 Chl a doublings of phytoplankton after the addition of DFB, also indicating the preference of cell generation over Chl a production. A decrease in the level of cellular Chl a, a main light-harvesting pigment in Fe-starved diatoms, may become a superior survival strategy to protect the cells from high irradiance that can cause photo-oxidative damages through photosynthesis. Such relatively low-Fe with high-light conditions could often occur in surface waters of the Oyashio region from spring to summer.     

Geometry of the Nojima Fault at Nojima-Hirabayashi, Japan – II. Microstructures and their Implications for Permeability and Strength

Samples of damage-zone granodiorite and fault core from two drillholes into the active, strike-slip Nojima fault zone display microstructures and alteration features that explain their measured present-day strengths and permeabilities and provide insight on the evolution of these properties in the fault zone. The least deformed damage-zone rocks contain two sets of nearly perpendicular (60–90° angles), roughly vertical fractures that are concentrated in quartz-rich areas, with one set typically dominating over the other. With increasing intensity of deformation, which corresponds generally to increasing proximity to the core, zones of heavily fragmented rock, termed microbreccia zones, develop between prominent fractures of both sets. Granodiorite adjoining intersecting microbreccia zones in the active fault strands has been repeatedly fractured and locally brecciated, accompanied by the generation of millimeter-scale voids that are partly filled with secondary minerals. Minor shear bands overprint some of the heavily deformed areas, and small-scale shear zones form from the pairing of closely spaced shear bands. Strength and permeability measurements were made on core collected from the fault within a year after a major (Kobe) earthquake. Measured strengths of the samples decrease regularly with increasing fracturing and fragmentation, such that the gouge of the fault core and completely brecciated samples from the damage zone are the weakest. Permeability increases with increasing disruption, generally reaching a peak in heavily fractured but still more or less cohesive rock at the scale of the laboratory samples. Complete loss of cohesion, as in the gouge or the interiors of large microbreccia zones, is accompanied by a reduction of permeability by 1-2 orders of magnitude below the peak values. The core samples show abundant evidence of hydrothermal alteration and mineral precipitation. Permeability is thus expected to decrease and strength to increase somewhat in active fault strands between earthquakes, as mineral deposits progressively seal fractures and fill pore spaces.     

Newly-generated Daliangshan Fault Zone—Shortcutting on the central section of Xianshuihe-Xiaojiang fault system

The Daliangshan fault zone is the eastern branch in the central section of Xianshuihe-Xiaojiang fault system. It has been neglected for a long time, partly because of no destructive earthquake records along this fault zone. On the other hand, it is located on the remote and inaccessible plateau. So far it was excluded as part of the Xianshuihe-Xiaojiang fault system. Based on the interpretation of aerophotographs and field investigations, we document this fault zone in detail, and give an estimation of strike-slip rate about 3 mm/a in Late Quaternary together with age dating data. The results suggest that the Daliangshan fault zone is a newly-generated fault zone resulted from shortcutting in the central section of Xianshuihe-Xiaojiang fault system because of the clockwise rotation of the Southeastern Tibetan Crustal Block, which is bounded by the Xianshuihe-Xiaojiang fault system. Moreover, the shortcutting may make the Daliangshan fault zone replace the Anninghe and Zemuhe fault zones gradually, and finally, the later two fault zones will probably die out with the continuous clockwise rotation.     

安宁河断裂带晚第四纪运动特征及模式的讨论

安宁河断裂带是中国西南地区一条重要的地震活动断层, 地方志记载公元1536年曾发生过震级大于7级的破坏性地震. 详细的断裂地貌航片解译和野外调查表明, 安宁河断裂带除具有主要的左旋走滑断层活动外,还兼有重要的逆冲运动分量. 根据冲沟和阶地面的位错量及其热释光测年结果估计,该断裂带晚更新世以来平均左旋走滑速率为3~7 mm/a. 根据滑移方向与断层走向的关系,推测跨安宁河断裂带东西向由于逆冲断层运动造成的挤压缩短速率约为1.7~4.0 mm/a; 简单分解鲜水河断裂带上的滑动速率,估计分配在大凉山断裂带上的滑动速率与安宁河断裂带上的大致相当,约为3~7 mm/a. 此外,根据野外调查结果,并结合最近青藏高原构造动力学研究的新认识, 建立了安宁河断裂带的动力学模型,认为安宁河断裂带是一条逆冲走滑断裂带. 其下盘（西盘）主动向南东方向下插,造成了上盘（东盘）向北西方向的上冲运动.      

Stage-V copepodites of Calanus sinicus and Calanus jashnovi (Copepoda: Calanoida) in mesopelagic zone of Sagami Bay as identified with genetic markers, with special reference to their vertical distribution

We applied genetic makers to identify Calanus species occurring in Sagami Bay, Japan, in order to investigate their vertical distribution in the upper 1000 m. First, interspecific genetic distances of three gene loci, mitochondrial small ribosomal RNA (srRNA), nuclear internal transcribed spacers 1 (ITS1) and 2 (ITS2), were estimated from morphologically distinguishable adult females of Calanus sinicus, Calanus jashnovi and Calanus pacificus that were collected from Sagami Bay, the Kuroshio Extension and the Oyashio region, respectively. The highest levels of interspecific genetic distance were observed in srRNA, followed by ITS1 and ITS2. The intraspecific genetic distances within C. sinicus were much lower than the interspecific genetic distances, indicating that DNA sequences in these loci are consistent with the morphological differences. This information was used as a criterion for species identification based on DNA sequence variation, and allowed us to identify the fifth copepodites (CVs) or younger stages of these species. Next, the vertical distribution of Calanus species was investigated in Sagami Bay in May 2006, on the basis of a stratified sampling in the upper 1000 m. By applying the genetic markers, 23 individuals comprising all copepodite stages were allocated into either C. sinicus or C. jashnovi, and the small- and large-sized CVs were identified as C. sinicus and C. jashnovi, respectively. The total abundance of C. sinicus was highest at 0-50 m and decreased with depth. On the contrary, CV individuals of C. sinicus were abundant not only in 0-50 m but also below 200 m with minimum occurrences in 150-200 m depth. C. jashnovi was much less abundant than C. sinicus and comprised of only CIV and CV which occurred in the upper 100 m and deeper than 50 m depths, respectively. The abundance of C. sinicus in the 1000-m water column of Sagami Bay was at a level comparable to that in shelf waters, suggesting the importance of off-shelf individuals in the biological production and organic transport in the respective areas.     

Structure, biomass distribution and trophodynamics of the pelagic ecosystem in the Oyashio region, western subarctic Pacific

Biomass distribution and trophodynamics in the oceanic ecosystem in the Oyashio region are presented and analyzed, combining the seasonal data for plankton and micronekton collected at Site H since 1996 with data for nekton and other animals at higher trophic levels from various sources. The total biomass of biological components including bacteria, phytoplankton, microzooplankton, mesozooplankton, micronekton, fishes/squids and marine birds/mammals was 23 g C m⁻², among which the most dominant component was mesozooplankton (34% of the total), followed by phytoplankton (28%), bacteria (15%) and microzooplankton (protozoans) (14%). The remainder (9%) was largely composed of micronekton and fish/squid. Marine mammals/birds are only a small fraction (0.14%) of the total biomass. Large/medium grazing copepods (Neocalaus spp., Eucalanus bungii and Metridia spp.) accounted for 77% of the mesozooplankton biomass. Based on information about diet composition, predators were assigned broadly into mean trophic level 3–4, and carbon flow through the grazing food chain was established based on the estimated annual production/food consumption balance of each trophic level. From the food chain scheme, ecological efficiencies as high as 24% were calculated for the primary/secondary production and 21% for the secondary/tertiary production. Biomass and production of bacteria were estimated as 1/10 of the respective values for phytoplankton at Site H, but the role of the microbial food chain remains unresolved in the present analysis. As keystone species in the oceanic Oyashio region, Neocalanus spp. are suggested as a vital link between primary production and production of pelagic fishes, mammals and birds.     

Modeling Arctic Ocean heat transport and warming episodes in the 20th century caused by the intruding Atlantic Water

This study investigates the Arctic Ocean warming episodes in the 20th century using both a high-resolution coupled global climate model and historical observations. The model, with no flux adjustment, reproduces well the Atlantic Water core temperature （AWCT） in the Arctic Ocean and shows that four largest decadalscale warming episodes occurred in the 1930s, 70s, 80s, and 90s, in agreement with the hydrographic observational data. The difference is that there was no pre-warming prior to the 1930s episode, while there were two pre-warming episodes in the 1970s and 80s prior to the 1990s, leading the 1990s into the largest and prolonged warming in the 20th century. Over the last century, the simulated heat transport via Fram Strait and the Barents Sea was estimated to be, on average, 31.32 TW and 14.82 TW, respectively, while the Bering Strait also provides 15.94 TW heat into the west- ern Arctic Ocean. Heat transport into the Arctic Ocean by the Atlantic Water via Fram Strait and the Barents Sea correlates significantly with AWCT （ C = 0.75 ） at 0- lag. The modeled North Atlantic Oscillation （NAO） index has a significant correlation with the heat transport （ C = 0.37 ）. The observed AWCT has a significant correlation with both the modeled AWCT （ C =0.49） and the heat transport （ C =0.41 ）. However, the modeled NAO index does not significantly correlate with either the observed AWCT （ C = 0.03 ） or modeled AWCT （ C = 0.16 ） at a zero-lag, indicating that the Arctic climate system is far more complex than expected.