Formation of iron sulfide nodules during anaerobic oxidation of methane

The biomarker compositions of iron sulfide nodules (ISNs; upper Pliocene Valle Ricca section near Rome, Italy) that contain the ferrimagnetic mineral greigite (Fe₃S₄) were examined. In addition to the presence of specific terrestrial and marine biomarkers, consistent with formation in coastal marine sediments, these ISNs contain compounds thought to originate from sulfate reducing bacteria (SRB). These compounds include a variety of low-molecular-weight and branched alkanols and several non-isoprenoidal dialkyl glycerol diethers (DGDs). In addition, archaeal biomarkers, including archaeol, macrocyclic isoprenoidal DGDs and isoprenoidal glycerol dialkyl glycerol tetraethers are also present. Both SRB and archaeal lipid δ¹³C values are depleted in ¹³C (δ¹³C values are typically less than −50‰), which suggests that the SRB and archaea consumed ¹³C depleted methane. These biomarker and isotopic signatures are similar to those found in cold seeps and marine sediments where anaerobic oxidation of methane (AOM) occurs with sulfate serving as the terminal electron acceptor. Association of AOM with formation of greigite-containing ISNs could provide an explanation for documented remagnetization of the Valle Ricca sediments. Upward migration of methane, subsequent AOM and associated authigenic greigite formation are widespread processes in the geological record that have considerable potential to compromise paleomagnetic records.     

Case Histories of Shallow Time Domain Electromagnetics in Environmental Site Assessment

Time domain electromagnetic (TDEM) soundings were utilized in site assessment studies for the purpose of accomplishing two objectives: (1) measuring the migration of brines from oil and gas field evaporation pits, and (2) mapping the continuity of clay strata. Both case histories are representative of common objectives in site assessment. The data for both examples were analyzed by one-dimensional ridge regression inversions.
Both case histories illustrate that TDEM is an effective method for determining the lateral and vertical resistivity distribution (geoelectric section) of the subsurface in the depth range from about 5 m to 100 m, and it is known from other investigations that depths of investigations up to 2500 m can be achieved with TDEM.
Frequently, the lateral extent of contaminant plumes emanating from localized sources are of limited areal extent. The case history involving the use of TDEM to map a brine plume shows that a TDEM measurement has a relatively small zone of influence, so that meaningful information about the lateral and vertical extent of the plume can be obtained. Both case histories demonstrate the ability of TDEM to determine geoelectric sections below layers of low resistivity.     

Evaluating local population dynamics of the American lobster,Homarus americanus,with trap‐based mark‐recapture methods and seabed mapping

Seabed mapping, spatially referenced trapping, and mark‐recapture methods have all been useful tools in ecological studies of lobsters and other benthic animals. Here we integrate the three methods to evaluate local population dynamics and movements of American lobsters, Homarus americanus, in coastal fishing grounds in Maine, United States. The study was conducted on five study areas of different size, and used two different sampling protocols. At one site (1 km² in area) we used a monthly mark‐recapture sampling interval over a 6‐month period, only tagging a subsample of the catch. At four smaller sites (0.3 km²) we used a shorter‐term approach, sampling at 3–4‐day intervals for a 2‐week duration, tagging the entire catch. Tagging data were analysed with a modified Jolly‐Seber model adapted for continuous sampling to estimate population abundance, gains (immigration), and losses (emigration and mortality). Side‐scan sonar surveys of the seabed combined with diver‐based population surveys, stratified by substrate type, provided an independent comparison to mark‐recapture‐based estimates of abundance over the same areas. Spatial referencing of trap catch also allowed us to relate catch rates and lobster movements directly to seabed features. The longer‐term tagging data on the larger study area provided abundance estimates that were more consistent with the diver observations, and estimates of gains and losses statistically more robust, than those derived from the shorter‐term effort on the smaller sites. The flux of lobsters followed the well known seasonal movements on these fishing grounds, with gains and losses from the larger study area ranging over 1000 individuals per day, and an estimated mid‐summer peak density of >65 000 lobsters per km² (individuals >50 mm carapace length). This approach may lend itself to broader application with the American lobster.     

Synthetic coral-reef terraces and variations of Quaternary sea level

Coral-reef terraces on tectonically elevated coasts provide important data on variations of sea level. In this paper a systematic approach is presented for the construction of synthetic reef terraces. Idealized reef terraces are generated assuming a constant rate of tectonic uplift ν and a harmonic variation of sea level with amplitudeh_wo and period τ. It is further assumed that coral terraces grow only during periods of relative sea-level rise. The behavior is governed by the parameter u = τυ/2π h_wo. If u > 1 no reef terraces form. If 0.217 < u < 1 a discontinuous series of terraces form on the uplifting basement. If 0 < u < 0.217 the basement is covered with coral and a series of coral terraces forms on this coral. Uplifted coral-reef terraces on the Huon Peninsula, Papua New Guinea, compare reasonably well with terraces generated by our model with τ = 20,000 years andh_wo = 21.4 m. We also compare the observed terraces with model terraces using the paleo sea level inferred from¹⁸O/¹⁶O data. The observed terraces are qualitatively similar to those predicted using the oxygen isotope data, however, the model terraces require larger relative sea-level variations with a near 20,000 year period than those inferred directly from the¹⁸O/¹⁶O data.     

A Raman spectroscopic study of H/D isotopically substituted hydrous aluminosilicate glasses

We have obtained high quality Raman spectra for two H/D isotopically substituted hydrous aluminosilicate glasses with compositions along the NaAlSi₃O₈-SiO₂ join. Consistent with the results of previous studies, the isotope shift for the band near 900 cm^–1, whose intensity grows with increasing water content, is extremely small: v _h /v _d = 1.004 ± 0.004. The lack of a definite H/D isotope shift for this band does not, however, preclude its association with a vibration of a hydrous species in the glass, because of likely strong coupling between different vibrational modes of hydrated framework species. The 900 cm^–1 band could well be due to a T — OH (T = Si, Al) stretching or bending vibration in the hydrous glass, as required by the presence of a combination band near 4500 cm^–1 in near-infrared spectra.     

Calcium carbonate dissolution in deep sea sediments: reconciling microelectrode, pore water and benthic flux chamber results

We report the benthic fluxes of O₂, titration alkalinity (TA), Ca²⁺, NO₃⁻, PO₄³⁻, and Si(OH)₄ from in situ benthic flux chamber incubations on the Ceara Rise and Cape Verde Plateau and compare them to previously published results. We find within analytical uncertainty that the TA flux is twice the calcium flux, suggesting that dissolution/precipitation of CaCO₃ is the principal mechanism controlling benthic TA and Ca²⁺ fluxes. At sites where the sediments contain significant (>35%) CaCO₃ and the overlying waters are supersaturated with respect to CaCO₃, the ratios of the total dissolution rate to the remineralization rate are significantly less than at all other study sites. We propose that these observations can be explained by precipitation of fresh CaCO₃ at the supersaturated sediment surface followed by redissolution deeper in the sediments because of metabolically-produced CO₂. A numerical simulation is presented to demonstrate the feasibility of this explanation. In addition, surface exchange reactions in high-CaCO₃ sediments coupled with high rates of particle mixing may also impact rates of metabolic dissolution and depress chamber-derived estimates of carbonate alkalinity and calcium benthic fluxes. These results suggest that at supersaturated, high CaCO₃ locations, previous models of sediment diagenesis may have overestimated the impact of metabolic dissolution on the preservation of CaCO₃ deposited on the sea floor.     

Comparison of isoleucine epimerization in a model dipeptide and fossil protein

The dipeptide isoleucyl-glycine in aqueous solution has activation energies for isoleucine epimerization and hydrolysis of 23.1 and 20.9 kcal mol^?1, respectively. The activation energy for epimerization of NH₂-terminal isoleucine is 5–8 kcal mol^?1 less than activation energies reported for epimerization of isoleucine in the free state or in various protein systems. Furthermore, the rate of isoleucine epimerization in the NH₂-terminal position exceeds the rate of hydrolysis at temperatures between 0 and 152°C. Consequently, a high rate of epimerization in fossils should only occur when isoleucine is in the terminal position. Partially epimerized isoleucine will be converted through hydrolysis from the terminal form to the slower epimerizing free isoleucine. Over the course of the total isoleucine epimerization reaction, either in dipeptides or proteins, the activation energy will increase and the reaction rate will decrease as terminal isoleucine is converted to free isoleucine. This process may explain the non-linear kinetics observed for isoleucine epimerization in carbonate fossils.The degree of isoleucine epimerization is low in different molecular weight fractions of a fossil protein from Mercenaria in all fractions greater than 500 mol. wt, where most isoleucine is likely to be in the interior position. In the less than 500 mol. wt peptide fraction, where a considerable portion of the isoleucine is likely to be in the terminal position, the degree of epimerization is significantly greater. These analytical results from fossil protein support the interpretation of isoleucine kinetics obtained by study of dipeptides.     

Degradation of plastic carrier bags in the marine environment

There is considerable concern about the hazards that plastic debris presents to wildlife. Use of polymers that degrade more quickly than conventional plastics presents a possible solution to this problem. Here we investigate breakdown of two oxo-biodegradable plastics, compostable plastic and standard polyethylene in the marine environment. Tensile strength of all materials decreased during exposure, but at different rates. Compostable plastic disappeared from our test rig between 16 and 24 weeks whereas approximately 98% of the other plastics remained after 40 weeks. Some plastics require UV light to degrade. Transmittance of UV through oxo-biodegradable and standard polyethylene decreased as a consequence of fouling such that these materials received ～ 90% less UV light after 40 weeks. Our data indicate that compostable plastics may degrade relatively quickly compared to oxo-biodegradable and conventional plastics. While degradable polymers offer waste management solutions, there are limitations to their effectiveness in reducing hazards associated with plastic debris.