Software design for panoramic astronomical pipeline processing

We describe the software requirement and design specifications for all-sky panoramic astronomical pipelines. The described software aims to meet the specific needs of superwide-angle optics, and includes cosmic-ray hit rejection, image compression, star recognition, sky opacity analysis, transient detection and a web server allowing access to real-time and archived data. The presented software is being regularly used for the pipeline processing of 11 all-sky cameras located in some of the world's premier observatories. We encourage all-sky camera operators to use our software and/or our hosting services and become part of the global Night Sky Live network.     

On some advanced thermo‐mechanical models for saturated clays

This paper aims to evaluate the performance of several recent constitutive models in simulating the thermo‐mechanical behaviour of saturated clays. A classic thermo‐mechanical test on natural Boom Clay, commonly used in constitutive modelling, was first clarified. Different methods commonly used to measure volumetric strain in drained heating tests were then discussed. Model evaluation was performed in terms of thermodynamic and elasto‐plastic requirements. The capability of the models to capture the observed behaviour was assessed on the basis of the experimental evidence. It was shown that all the models provide reasonable predictions of the thermo‐mechanical behaviour of saturated clays. However, each constitutive model has its own limitations or unclear points from the theoretical point of view. Copyright © 2013 John Wiley & Sons, Ltd.     

Distribution patterns of macrobenthic species in relation to organic enrichment within aquaculture earthen ponds

The relationship between organic enrichment and macrobenthic colonization patterns was investigated during an 8-month period in Diplodus sargus (white seabream) production ponds. A stratified sampling design was applied and each pond was divided into three zones: water entrance (WE); central (C); and automatic feeder zones (AF). Generally, the number of species and Shannon–Wiener diversity increased from the WE to the AF zone. Abundance did not present a clear trend. The recently developed marine biotic index (AMBI) was applied and showed to be sufficiently robust to discriminate, within a relatively small area, differences in macrobenthic communities due to organic enrichment. Nevertheless, caution is advised when applying this index or others based on ecological group’s assignment, as the classification of a certain area may differ when allocating a certain species to an unsuitable group. This is particularly evident when common species are involved.     

Can Nassarius reticulatus be used as a bioindicator for Hg contamination? Results from a longitudinal study of the Portuguese coastline

The focus of this work is to explore the use of the netted whelk, Nassarius reticulatus (L.), as an indicator of mercury (Hg) contamination, by assessing the concentration of Hg in the sediments and in the whelk along the entire Portuguese coast. Total Hg concentrations ranged from below the detection limit (0.01 ng absolute mercury) up to 0.87 mg kg(-1) dry weight (dwt) in sediments and between 0.06 and 1.02 mg kg(-1) (dwt) for organisms, with no significant differences between males and females. Although organic mercury was not detected in the sediments, it represented, on average, 52% of the total Hg in the whelk tissues, and as high as 88% in some cases, suggesting mercury accumulation from dietary intake. Significant negative correlations were found between the total Hg concentrations in the sediments and the log(10) of Hg concentrations in whelk tissues males (r=-0.64; P<0.01) and females (r=-0.52; P<0.01) indicating that the species is a poor indicator of Hg contamination. Nevertheless, since the highest concentrations of organic mercury in the whelk tissues were found in the least contaminated areas, this species must be highly relevant in the trophic web, namely on the possible biomagnification of mercury. The high dietary mercury accumulation from feeding on carrion and the low bioavailability of mercury to whelks in estuarine sediments may be the basis of the mercury accumulation pattern in N. reticulatus.     

Copepod assemblages in a highly dynamic equatorial estuary on the Brazilian Amazon Coast

This study describes the spatial and temporal dynamics of the copepod fauna in the estuary of the Caeté River, a highly dynamic environment characterized by a unique set of hydrological and hydrodynamic attributes. This ecosystem is part of the Amazon Coastal Zone (ACZ), which sustains one of the world's largest continuous tracts of mangrove forest. In the present study, a predominance of high‐energy conditions characterized by macrotides and strong tidal currents was observed throughout the year. Salinity (0.03 ± 0.05–40.00 ± 0.84) and temperatures (26.43 ± 0.10–30.08 ± 0.43 °C) were higher than during the rainy season at all sampling stations. The highest chl‐a concentration (3.92 ± 1.47–17.63 ± 2.60 mg·m^?3) was recorded at the most oligohaline (innermost) station during the rainy season, while no spatial or seasonal pattern was found in dissolved nutrient concentrations, except for phosphates, which exhibited the highest concentrations during the dry season. A total of 22 copepod taxa was identified, of which the most abundant were Oithona hebes, Oithona oswaldocruzi, Acartia tonsa, Paracalanus quasimodo, Euterpina acutifrons and Pseudodiaptomus marshi. Copepodites and nauplii were also recorded. Mean total copepod abundance varied from 710.73 ± 897 individuals (ind.)·m^?3 at the inner station to 236,486 ± 398,360 ind.·m^?3 near the mouth of the estuary (outermost station). The results reflected rainfall‐influenced oscillations in hydrological variables, mainly salinity, which determined shifts in the distribution of copepods and their community structure within the study area. This pattern may be typical of estuaries in the ACZ with similar hydrodynamic and hydrological attributes that are not influenced by the Amazon River plume.     

Atmospheric Dioxin and Furan Deposition in Relation to Land-Use and Other Pollutants: A Survey with Lichens

Polychlorodibenzeno-dioxins and polychlorodibenzeno-furans (PCDD/Fs) are considered among the most toxic compounds on earth. The aim of the present study was to evaluate atmospheric PCDD/F deposition and identify the areas with greater deposition of these compounds in an important industrialized and urbanized region of Portugal, using lichens as biomonitors. For this purpose, samples of the lichen Xanthoria parietina were collected at 60 sampling sites, covering urban, industrial, forestry and agriculture areas, and analyzed for PCDD/Fs, sulfur, nitrogen, zinc, iron, chromium, lead, cobalt, nickel, copper, calcium, manganese, magnesium and potassium. The concentrations of PCDD/Fs in lichens were compared with the other elements and related to land-use and population density. The results obtained through the geostatistical interpolations and after principal component analysis have shown that PCDD/F deposition estimated by lichens is greater near industrial and highly populated urban areas. We found that lichens are suitable biomonitors of PCDD/F atmospheric deposition and can contribute to a better knowledge of air quality in a region, enabling identification of critical pollutant deposition areas.     

A Global Inventory of Burned Areas at 1 Km Resolution for the Year 2000 Derived from Spot Vegetation Data

Biomass burning constitutes a major contribution to global emissions of carbon dioxide, carbon monoxide, methane, greenhouse gases and aerosols. Furthermore, biomass burning has an impact on health, transport, the environment and land use. Vegetation fires are certainly not recent phenomena and the impacts are not always negative. However, evidence suggests that fires are becoming more frequent and there is a large increase in the number of fires being set by humans for a variety of reasons. Knowledge of the interactions and feedbacks between biomass burning, climate and carbon cycling is needed to help the prediction of climate change scenarios. To obtain this knowledge, the scientific community requires, in the first instance, information on the spatial and temporal distribution of biomass burning at the global scale. This paper presents an inventory of burned areas at monthly time periods for the year 2000 at a resolution of 1 kilometer (km) and is available to the scientific community at no cost. The burned area products have been derived from a single source of satellite-derived images, the SPOT VEGETATION S1 1 km product, using algorithms developed and calibrated at regional scales by a network of partners. In this paper, estimates of burned area, number of burn scars and average size of the burn scar are described for each month of the year 2000. The information is reported at the country level. This paper makes a significant contribution to understanding the effect of biomass burning on atmospheric chemistry and the storage and cycling of carbon by constraining one of the main parameters used in the calculation of gas emissions.     

The effect of flow at Maud Rise on the sea-ice cover – numerical experiments

 The role of seamounts in the formation and evolution of sea ice is investigated in a series of numerical experiments with a coupled sea ice–ocean model. Bottom topography, stratification and forcing are configured for the Maud Rise region in the Weddell Sea. The specific flow regime that develops at the seamount as the combined response to steady and tidal forcing consists of free and trapped waves and a vortex cap, which is caused by mean flow and tidal flow rectification. The enhanced variability through tidal motion in particular modifies the mixed layer above the seamount enough to delay and reduce sea-ice formation throughout the winter. The induced sea-ice anomaly spreads and moves westward and affects an area of several 100 000 km². Process studies reveal the complex interaction between wind, steady and periodic ocean currents: all three are required in the process of generation of the sea ice and mixed layer anomalies (mainly through tidal flow), their detachment from the topography (caused by steady oceanic flow) and the westward translation of the sea-ice anomaly (driven by the time-mean wind).