Concurrent imaging of chlorophyll fluorescence,Chlorophyll a content and green fluorescent proteins‐like proteins of symbiotic cnidarians

Research on photosynthetic cnidarians has been mainly focused on the symbiosis established between the cnidarian host and its dinoflagellates endosymbionts from genus Symbiodinium. Despite the potential of imaging techniques for assessing the spatial distribution of key parameters of cnidarian photobiology, such as photochemical activity, chlorophyll a content or green fluorescent proteins (GFPs), to our best knowledge, no study has ever attempted to simultaneous map these three features. In this study, we developed a modified imaging pulse amplitude fluorometer by applying excitation light of different wavelengths and selectively detecting short spectral bands through bandpass filters. The imaging system was used to sequentially excite and quantify chlorophyll variable fluorescence (maximum quantum yield of photosystem II, F_v/F_m), Chl a content (normalized difference vegetation index) and relative content of GFPs. The spatial distribution of these photophysiological parameters was mapped both horizontally, across the surface of the soft corals Sarcophyton cf. glaucum and Sinularia flexibilis and the zoanthid Protopalythoa sp., and vertically, throughout a vertical section of S. cf. glaucum. Results showed bleached areas within each individual coral colony and registered photophysiological changes with S. cf. glaucum tissue depth. Analysis of Protopalythoa sp. polyps’ expansion revealed differential surface patterns of NDVI and GFP concentration, and a negative relation between these latter parameters within each polyp. This novel non‐invasive approach allowed a high‐resolution characterization of the spatial relationship between these key parameters through the analysis of image information on a pixel‐by‐pixel basis, which has great potential for investigating the physiological state of symbiotic associations.     

POLARIX: a pathfinder mission of X-ray polarimetry

Since the birth of X-ray astronomy, spectral, spatial and timing observation improved dramatically, procuring a wealth of information on the majority of the classes of the celestial sources. Polarimetry, instead, remained basically unprobed. X-ray polarimetry promises to provide additional information procuring two new observable quantities, the degree and the angle of polarization. Polarization from celestial X-ray sources may derive from emission mechanisms themselves such as cyclotron, synchrotron and non-thermal bremsstrahlung, from scattering in aspheric accreting plasmas, such as disks, blobs and columns and from the presence of extreme magnetic field by means of vacuum polarization and birefringence. Matter in strong gravity fields and Quantum Gravity effects can be studied by X-ray polarimetry, too. POLARIX is a mission dedicated to X-ray polarimetry. It exploits the polarimetric response of a Gas Pixel Detector, combined with position sensitivity, that, at the focus of a telescope, results in a huge increase of sensitivity. The heart of the detector is an Application-Specific Integrated Circuit (ASIC) chip with 105,600 pixels each one containing a full complete electronic chain to image the track produced by the photoelectron. Three Gas Pixel Detectors are coupled with three X-ray optics which are the heritage of JET-X mission. A filter wheel hosting calibration sources unpolarized and polarized is dedicated to each detector for periodic on-ground and in-flight calibration. POLARIX will measure time resolved X-ray polarization with an angular resolution of about 20 arcsec in a field of view of 15 × 15 arcmin and with an energy resolution of 20% at 6 keV. The Minimum Detectable Polarization is 12% for a source having a flux of 1 mCrab and 10⁵ s of observing time. The satellite will be placed in an equatorial orbit of 505 km of altitude by a Vega launcher. The telemetry down-link station will be Malindi. The pointing of POLARIX satellite will be gyroless and it will perform a double pointing during the earth occultation of one source, so maximizing the scientific return. POLARIX data are for 75% open to the community while 25% + SVP (Science Verification Phase, 1 month of operation) is dedicated to a core program activity open to the contribution of associated scientists. The planned duration of the mission is one year plus three months of commissioning and SVP, suitable to perform most of the basic science within the reach of this instrument. A nice to have idea is to use the same existing mandrels to build two additional telescopes of iridium with carbon coating plus two more detectors. The effective area in this case would be almost doubled.     

Marine debris review for Latin America and the wider Caribbean region: from the 1970s until now, and where do we go from here?

The available literature on marine debris from Latin America and the Wider Caribbean Region was collected and linked, reviewing their methodologies and principal results (quantities, composition and spatial-temporal patterns). The study region comprises 52 coastal countries of which only 14 had registers of works on marine debris. A total of 70 works were available and 69 had their full contents accessed. Brazil dominated the available literature with 70% of the documents. Beaches were the most studied environment, and plastics the prevalent form of contamination in the whole region. The exposure of marine biota (species, type of contact, consequences) was highlighted. The studied region, although still little exploited by this sort of research, shows the same contamination patterns observed world-wide. We also contacted 40 researchers in the area, collecting scientific contributions, opinions and suggestions for improvement of this research field. Further advances and new (urgently needed) lines of research are also discussed.     

Recent Developments in the Analysis of the Black Mat Layer and Cosmic Impact at 12.8 ka

Recent analyses of sediment samples from “black mat” sites in South America and Europe support previous interpretations of an ET impact event that reversed the Late Glacial demise of LGM ice during the Bølling Allerød warming, resulting in a resurgence of ice termed the Younger Dryas (YD) cooling episode. The breakup or impact of a cosmic vehicle at the YD boundary coincides with the onset of a 1‐kyr long interval of glacial resurgence, one of the most studied events of the Late Pleistocene. New analytical databases reveal a corpus of data indicating that the cosmic impact was a real event, most possibly a cosmic airburst from Earth's encounter with the Taurid Complex comet or unknown asteroid, an event that led to cosmic fragments exploding interhemispherically over widely dispersed areas, including the northern Andes of Venezuela and the Alps on the Italian/French frontier. While the databases in the two areas differ somewhat, the overall interpretation is that microtextural evidence in weathering rinds and in sands of associated paleosols and glaciofluvial deposits carry undeniable attributes of melted glassy carbon and Fe spherules, planar deformation features, shock‐melted and contorted quartz, occasional transition and platinum metals, and brecciated and impacted minerals of diverse lithologies. In concert with other black mat localities in the Western USA, the Netherlands, coastal France, Syria, Central Asia, Peru, Argentina and Mexico, it appears that a widespread cosmic impact by an asteroid or comet is responsible for deposition of the black mat at the onset of the YD glacial event. Whether or not the impact caused a 1‐kyr interval of glacial climate depends upon whether or not the Earth had multiple centuries‐long episodic encounters with the Taurid Complex or asteroid remnants; impact‐related changes in microclimates sustained climatic forcing sufficient to maintain positive mass balances in the reformed ice; and/or inertia in the Atlantic thermohaline circulation system persisted for 1 kyr.     

Evaluating the fitness for use of spatial data sets to promote quality in ecological assessment and monitoring

This article proposes and illustrates a practical methodological framework to evaluate the fitness for use of spatial data sets for environmental and ecological applications, focusing on user requirements for specified application contexts. The methodology is based on the use of metadata to analyze similarity between the data characteristics and the user’s needs or expectations for several quality indicators. Additionally, the concept of ‘critical factors’ is introduced in this framework, allowing users to define which quality indicators have greater importance given their own requirements or expectations and the specified application contexts. The proposed methodology further allows integrating and interconnecting the spatial data quality (SDQ) evaluation methodology with metadata geoportals in WebGIS platforms, facilitating its operation by users from non-spatial disciplines and with often limited expertise on this subject. Examples of the evaluation of fitness for use for specific application contexts within the project BIO_SOS (‘Biodiversity Multi-SOurce Monitoring System: From Space To Species’ FP7 project) are presented. By providing a prompt and straightforward evaluation tool, the proposed methodology can encourage the implementation of SDQ evaluation routines in ecological assessment and monitoring programs, promoting a more adequate use of geospatial data and ultimately contributing to well-supported policy and management decisions.     

Effects of substratum type on fish assemblages in shallow areas of a tropical estuary

While there is already a comprehensive understanding of the effects of environmental variables, such as dissolved oxygen, temperature and salinity, on the structure, biomass and metabolism of aquatic biota in estuarine habitats, the effect of sedimentation, a harmful underlying factor, remains unclear. The aim of this study was to assess the differences in fish assemblages along the freshwater to salt water gradient of a large tropical estuary, and to evaluate the effects on them of habitat disturbance associated with shallow water sedimentation in the intertidal areas. Fish and environmental variables were recorded in the upper, middle and lower salinity zones of the estuary at ebb tide in both the dry and wet seasons. Sediment samples associated with different levels of habitat disturbance were analysed using granulometry, and their organic content and dissolved oxygen levels were quantified. Water temperature, salinity, pH and dissolved oxygen levels were also measured. Habitat disturbance was found to be correlated with the density, biomass and richness of fish assemblages. A total of 77 species were recorded, forming two distinct fish assemblages, with the Eleotridae family dominating in the upper zone, and Gerreidae, Gobiidae and Tetraodontidae the most common in the middle and lower estuary. Changes in the structure of fish assemblages, including reductions in density, biomass and richness, were associated with disturbance to natural features, where muddy sediment was replaced by sandy sediment and the quantity of organic matter fell. Atherinella brasiliensis was the species which showed a preference for the disturbed areas in the middle and lower zones, while Dormitator maculatus showed a preference for them in the upper estuary. They may be taken as indicators of habitat disturbance due to shallow sedimentation.     

Amazon forest biomass density maps: tackling the uncertainty in carbon emission estimates

As land use change (LUC), including deforestation, is a patchy process, estimating the impact of LUC on carbon emissions requires spatially accurate underlying data on biomass distribution and change. The methods currently adopted to estimate the spatial variation of above- and below-ground biomass in tropical forests, in particular the Brazilian Amazon, are usually based on remote sensing analyses coupled with field datasets, which tend to be relatively scarce and often limited in their spatial distribution. There are notable differences among the resulting biomass maps found in the literature. These differences subsequently result in relatively high uncertainties in the carbon emissions calculated from land use change, and have a larger impact when biomass maps are coded into biomass classes referring to specific ranges of biomass values. In this paper we analyze the differences among recently-published biomass maps of the Amazon region, including the official information used by the Brazilian government for its communication to the United Nation Framework on Climate Change Convention of the United Nations. The estimated average pre-deforestation biomass in the four maps, for the areas of the Amazon region that had been deforested during the 1990–2009 period, varied from 205?±?32 Mg ha^?1 during 1990–1999, to 216?±?31 Mg ha^?1 during 2000–2009. The biomass values of the deforested areas in 2011 were between 7 and 24 % higher than for the average deforested areas during 1990–1999, suggesting that although there was variation in the mean value, deforestation was tending to occur in increasingly carbon-dense areas, with consequences for carbon emissions. To summarize, our key findings were: (i) the current maps of Amazonian biomass show substantial variation in both total biomass and its spatial distribution; (ii) carbon emissions estimates from deforestation are highly dependent on the spatial distribution of biomass as determined by any single biomass map, and on the deforestation process itself; (iii) future deforestation in the Brazilian Amazon is likely to affect forests with higher biomass than those deforested in the past, resulting in smaller reductions in carbon dioxide emissions than expected purely from the recent reductions in deforestation rates; and (iv) the current official estimate of carbon emissions from Amazonian deforestation is probably overestimated, because the recent loss of higher-biomass forests has not been taken into account.     

Avalanche and landslide simulation using the material point method: flow dynamics and force interaction with structures

In this paper, the material point method (MPM) is presented as a tool for simulating large deformation, gravity-driven landslides. The primary goal is to assess the interaction of these flow-like events with the built environment. This includes an evaluation of earthen mounds when energy dissipating devices are placed in the path of a snow avalanche. The effectiveness of the embankments is characterized using displacement, velocity, mass, and energy measures. A second example quantifies the force interaction between a landslide and a square rigid column. Multiple slide approach angles are considered, and various aspects of the impact force are discussed.