A multi‐stock,length‐based assessment model for New Zealand rock lobster (Jasus Edwardsii)

We describe a multi‐stock, length‐based Bayesian assessment model for New Zealand spiny lobster (Jasus edwardsii) fisheries. This model allows simultaneous modelling of two or more stocks with a mixture of common and stock‐specific parameters: recruitment is always stock‐specific, but any other parameter can be specified as either common or stock‐specific. Common parameters are estimated from a wider base than they would be in a single‐stock model. The model's time step is flexible and can be changed during the period being modelled to accommodate better data quality in recent data. Other options include the capacity to estimate movements among stocks, allow density‐dependent growth, and choose among likelihood functions for the various data sets, between finite and instantaneous fishing dynamics and between two forms of selectivity curve.     

A voluntary reduction in the commercial catch of rock lobster (Jasus edwardsii) in a New Zealand fishery

We describe the development and application of a management procedure (decision rule) that resulted in a voluntary reduction in the commercial catch of spiny rock lobster (Jasus edwardsii) in the lower east coast of North Island of New Zealand. The management procedure was developed from an accepted assessment of the CRA 4 (Wellington‐Hawke's Bay) fishery, which used an integrated length‐based assessment model fitted to commercial fishery catch‐per‐unit‐effort (CPUE) biomass indices, commercial length‐frequency data, and tag‐recapture data. The assessment model had been Bayesian, and used the joint posterior distribution of parameters to predict the effect of 384 alternative harvest control rules on the future size of the CRA 4 stock. The harvest control rules all used CPUE as their input, and generated annual changes in catch, which were then simulated by the population dynamics of the operating model. Uncertainty was added to evaluations through observation error, added to the simulated CPUE observations, and stochastic serial auto‐correlation variation in recruitment. We describe how this management procedure was used to effect a voluntary reduction in catch to address the problem of a rapidly declining population.     

Nitrogen utilisation by size‐fractionated phytoplankton assemblages associated with an upwelling event off Westland,New Zealand

Abstract

Uptake rates of ammonium (NH₄ ⁺ ), nitrate (NO₃ ^? ), and urea by three subgroups of phytoplankton (< 200, < 20, < 2 μm) off Westland, were measured using ¹⁵ N tracer techniques in midwinter 1988, after a recent upwelling. For all size fractions at surface irradiance (I₁₀₀), nitrogen (N) was taken up primarily as NO₃ ^?. This accounted for 67–85% of total N uptake (SρN), whereas at 40 and 7% of surface irradiance, the regenerated N (NH₄ ⁺ ) and urea) made up 31–72% of SρN. Depth profile experiments for all three size components showed that uptake of NO₃ ^? was most light‐sensitive, followed by that of NH₄ ⁺ and urea. The irradiance and nutrient availability plot indicated that light was substantially more important than the nutrient concentrations in controlling the assimilation of N by microplankton (20–200 μm). Nano‐ (2–20 μm) and picoplankton (< 2 μm) however, were not as sensitive to either light or nutrient concentrations. High winds and the resulting deep mixing, combined with offshore and alongshore advection in the midwinter, were suggested to be the major cause of the low biomass and N productivity.     

Age verification,growth and life history of rubyfish Plagiogeneion rubiginosum

Age verification of rubyfish (Plagiogeneion rubiginosum) was sought using the bomb radiocarbon chronometer procedure. Stable isotopes were investigated for life history characteristics. Radiocarbon (¹⁴C) and stable isotope (δ¹⁸O and δ¹³C) levels were measured in micro-samples from five otoliths that had been aged using a zone count method. All the core ¹⁴C measurements were ‘pre-bomb’ indicating ages of at least 45 years, and the ¹⁴C measurements across the otolith sections suggested that the zone-count ageing method described herein is not biased. Maximum estimated age was 100 years. There was no significant between-sex difference in the von Bertalanffy growth curves. The δ¹⁸O values indicated that rubyfish are near-surface as juveniles, and move deeper with age. Adults appear to reside in 600–1000 m; this is deeper than most trawl-capture data suggest, but not implausible, and has stock assessment implications. The δ¹³C values reflect fish metabolic rates, trophic feeding levels and oceanographic conditions. The stable isotopes record the environmental life history of each fish, and have value in distinguishing stocks and/or indicating vertical and latitudinal migratory patterns.     

Dissolved oxygen as an indicator of bioavailable dissolved organic carbon in groundwater

Concentrations of dissolved oxygen (DO) plotted vs. dissolved organic carbon (DOC) in groundwater samples taken from a coastal plain aquifer of South Carolina (SC) showed a statistically significant hyperbolic relationship. In contrast, DO-DOC plots of groundwater samples taken from the eastern San Joaquin Valley of California (CA) showed a random scatter. It was hypothesized that differences in the bioavailability of naturally occurring DOC might contribute to these observations. This hypothesis was examined by comparing nine different biochemical indicators of DOC bioavailability in groundwater sampled from these two systems. Concentrations of DOC, total hydrolysable neutral sugars (THNS), total hydrolysable amino acids (THAA), mole% glycine of THAA, initial bacterial cell counts, bacterial growth rates, and carbon dioxide production/consumption were greater in SC samples relative to CA samples. In contrast, the mole% glucose of THNS and the aromaticity (SUVA(254)) of DOC was greater in CA samples. Each of these indicator parameters were observed to change with depth in the SC system in a manner consistent with active biodegradation. These results are uniformly consistent with the hypothesis that the bioavailability of DOC is greater in SC relative to CA groundwater samples. This, in turn, suggests that the presence/absence of a hyperbolic DO-DOC relationship may be a qualitative indicator of relative DOC bioavailability in groundwater systems.     

Environmental impacts of dredging and other sediment disturbances on corals: A review

A review of published literature on the sensitivity of corals to turbidity and sedimentation is presented, with an emphasis on the effects of dredging. The risks and severity of impact from dredging (and other sediment disturbances) on corals are primarily related to the intensity, duration and frequency of exposure to increased turbidity and sedimentation. The sensitivity of a coral reef to dredging impacts and its ability to recover depend on the antecedent ecological conditions of the reef, its resilience and the ambient conditions normally experienced. Effects of sediment stress have so far been investigated in 89 coral species (～10% of all known reef-building corals). Results of these investigations have provided a generic understanding of tolerance levels, response mechanisms, adaptations and threshold levels of corals to the effects of natural and anthropogenic sediment disturbances. Coral polyps undergo stress from high suspended-sediment concentrations and the subsequent effects on light attenuation which affect their algal symbionts. Minimum light requirements of corals range from <1% to as much as 60% of surface irradiance. Reported tolerance limits of coral reef systems for chronic suspended-sediment concentrations range from <10mgL(-1) in pristine offshore reef areas to >100mgL(-1) in marginal nearshore reefs. Some individual coral species can tolerate short-term exposure (days) to suspended-sediment concentrations as high as 1000mgL(-1) while others show mortality after exposure (weeks) to concentrations as low as 30mgL(-1). The duration that corals can survive high turbidities ranges from several days (sensitive species) to at least 5-6weeks (tolerant species). Increased sedimentation can cause smothering and burial of coral polyps, shading, tissue necrosis and population explosions of bacteria in coral mucus. Fine sediments tend to have greater effects on corals than coarse sediments. Turbidity and sedimentation also reduce the recruitment, survival and settlement of coral larvae. Maximum sedimentation rates that can be tolerated by different corals range from <10mgcm(-2)d(-1) to >400mgcm(-2)d(-1). The durations that corals can survive high sedimentation rates range from <24h for sensitive species to a few weeks (>4weeks of high sedimentation or >14days complete burial) for very tolerant species. Hypotheses to explain substantial differences in sensitivity between different coral species include the growth form of coral colonies and the size of the coral polyp or calyx. The validity of these hypotheses was tested on the basis of 77 published studies on the effects of turbidity and sedimentation on 89 coral species. The results of this analysis reveal a significant relationship of coral sensitivity to turbidity and sedimentation with growth form, but not with calyx size. Some of the variation in sensitivities reported in the literature may have been caused by differences in the type and particle size of sediments applied in experiments. The ability of many corals (in varying degrees) to actively reject sediment through polyp inflation, mucus production, ciliary and tentacular action (at considerable energetic cost), as well as intraspecific morphological variation and the mobility of free-living mushroom corals, further contribute to the observed differences. Given the wide range of sensitivity levels among coral species and in baseline water quality conditions among reefs, meaningful criteria to limit the extent and turbidity of dredging plumes and their effects on corals will always require site-specific evaluations, taking into account the species assemblage present at the site and the natural variability of local background turbidity and sedimentation.     

Modelling the bulk flow of a bedrock‐constrained,multi‐channel reach of the Mekong River,Siphandone, southern Laos

The general nature of bulk flow within bedrock single‐channel reaches has been considered by several studies recently. However, the flow structure of a bedrock‐constrained, large river with a multiple channel network has not been investigated previously. The multiple channel network of the Siphandone wetlands in Laos, a section of the Mekong River, was modelled using a steady one‐dimensional hydraulic model. The river network is characterized by a spatially‐varying channel‐form leading to significant changes in the bulk flow properties between and along the channels. The challenge to model the bulk flow in such a remote region was the lack of ideal boundary conditions. The flow models considered both low flow, high inbank and overbank flows and were calibrated using SPOT satellite sensor imagery and limited field data concerning water levels. The application of the model highlighted flow characteristics of a large multi‐channel network and also further indicated the field data that would be required to properly characterize the flow field empirically. Important results included the observation that adjacent channels within the network had different water surface slopes for the same moments in time; thus calibration data for modelling similar systems needs to account for these significant local differences. Further, the in‐channel hydraulic roughness coefficient strongly varied from one cross‐section to the next (Manning's ‘n’ range: 0·01 to 0·10). These differences were amplified during low flow but persisted in muted form during high discharges. Copyright © 2012 John Wiley & Sons, Ltd.     

Energetic Constraints on Precipitation Under Climate Change

Energetic constraints on precipitation are useful for understanding the response of the hydrological cycle to ongoing climate change, its response to possible geoengineering schemes, and the limits on precipitation in very warm climates of the past. Much recent progress has been made in quantifying the different forcings and feedbacks on precipitation and in understanding how the transient responses of precipitation and temperature might differ qualitatively. Here, we introduce the basic ideas and review recent progress. We also examine the extent to which energetic constraints on precipitation may be viewed as radiative constraints and the extent to which they are confirmed by available observations. Challenges remain, including the need to better demonstrate the link between energetics and precipitation in observations and to better understand energetic constraints on precipitation at sub-global length scales.     

Origin and dynamics of groundwater salinity in the alluvial plains of western Delhi and adjacent territories of Haryana State,India

Groundwater salinity is a widespread problem and a challenge to water resources management. It is an increasing concern in the alluvial plains of Delhi and neighbouring Haryana state as well as a risk for agricultural production water supply and sustainable development. This study aims to identify potential sources of dissolved salts and the driving mechanisms of salinity ingress in the shallow aquifer. It combines a comprehensive review of environmental conditions and the analysis of groundwater samples from 25 sampling points. Major ions are analysed to describe the composition and distribution of saline groundwater and dissolution/precipitation dynamics. Density stratification and local upconing of saline waters were identified by multilevel monitoring and temperature logging. Bromide–chloride ratios hold information on the formation of saline waters, and nitrate is used as an indicator for anthropogenic influences. In addition, stable isotope analysis helps to identify evaporation and to better understand recharge processes and mixing dynamics in the study region. The results lead to the conclusion that surface water and groundwater influx into the poorly drained semiarid basin naturally results in the accumulation of salts in soil, sediments and groundwater. Human‐induced changes of environmental conditions, especially the implementation of traditional canal and modern groundwater irrigation, have augmented evapotranspiration and led to waterlogging in large areas. In addition, water‐level fluctuations and perturbation of the natural hydraulic equilibrium favour the mobilisation of salts from salt stores in the unsaturated zone and deeper aquifer sections. The holistic approach of this study demonstrates the importance of various salinity mechanisms and provides new insights into the interference of natural and anthropogenic influences. Copyright © 2011 John Wiley & Sons, Ltd.     

Marine renewable energy and public rights

Marine renewable energy is likely to be an important part of UK energy policy over the next decades. A start has already been made, but to generate power on a significant scale requires the use of vast areas of ocean, on which there are competing claims. Legislation, and in particular the Energy Act 2004, goes a long way towards giving developers the legal infrastructure they need, to invest with confidence. But it is far from perfect, in dealing with important competing rights. This article has a narrow (but important) focus. It assumes that there are no problems over jurisdiction or international law. It is concerned principally with the rights of UK citizens. The issue is about reconciling the generation of large-scale marine renewable energy with other legitimate uses of the sea, and in particular fishing and navigation rights.