Integration of optical and Synthetic Aperture Radar (SAR) imagery for delivering operational annual crop inventories

Agriculture plays a critical role within Canada’s economy and, as such, sustainability of this sector is of high importance. Targeting and monitoring programs designed to promote economic and environmental sustainability are a vital component within Canada’s agricultural policy. A hierarchy of land information, including up to date information on cropping practices, is needed to measure the impacts of programs on land use decision-making and to gauge the environmental and economic benefits of these investments. A multi-year, multi-site research activity was completed to develop a robust methodology to inventory crops across Canada’s large and diverse agricultural landscapes. To move towards operational implementation the methodology must deliver accurate crop inventories, with consistency and reliability. In order to meet these operational requirements and to mitigate risk associated with reliance on a single data source, the methodology integrated both optical and Synthetic Aperture Radar (SAR) imagery. The results clearly demonstrated that multi-temporal satellite data can successfully classify crops for a variety of cropping systems present across Canada. Overall accuracies of at least 85% were achieved, and most major crops were also classified to this level of accuracy. Although multi-temporal optical data would be the preferred data source for crop classification, a SAR-optical dataset (two Envisat ASAR images and one optical image) provided acceptable accuracies and will mitigate risk associated with operational implementation. The preferred dual-polarization mode would be VV–VH. Not only were these promising classification results repeated year after year, but the target accuracies were met consistently for multiple sites across Canada, all with varying cropping systems.     

The design and the development of a hyperspectral and multispectral airborne mapping system

Flexible and cost-effective tools for rapid image acquisition and natural resource mapping are needed by land managers. This paper describes the hardware and software architecture of a low-cost system that can be deployed on a light aircraft for rapid data acquisition. The Hyperspectral and Multispectral Cameras for Airborne Mapping (HAMCAM) was designed and developed in the Geospatial Laboratory for Environmental Dynamics at the University of Idaho as a student-learning tool, and to enhance the existing curriculum currently offered. The system integrates a hyperspectral sensor with four multispectral cameras, an Inertial Navigation System (INS), a Wide Area Augmentation System (WAAS)-capable Global Positioning System (GPS), a data acquisition computer, and custom software for running the sensors in a variety of different modes. The outputs include very high resolution imagery obtained in four adjustable visible and near-infrared bands from the multispectral imager. The hyperspectral sensor acquires 240 spectral bands along 2.7 nm intervals within the 445–900 nm range. The INS provides aircraft pitch, roll and yaw information for rapid geo-registration of the imagery. This paper will discuss the challenges associated with the development of the system and the integration of components and software for implementation of this system for natural resource management applications. In addition, sample imagery acquired by the sensor will be presented.     

Microbial photosynthesis in coral reef sediments (Heron Reef, Australia)

We investigated microphytobenthic photosynthesis at four stations in the coral reef sediments at Heron Reef, Australia. The microphytobenthos was dominated by diatoms, dinoflagellates and cyanobacteria, as indicated by biomarker pigment analysis. Conspicuous algae firmly attached to the sand grains (ca. 100 μm in diameter, surrounded by a hard transparent wall) were rich in peridinin, a marker pigment for dinoflagellates, but also showed a high diversity based on cyanobacterial 16S rDNA gene sequence analysis. Specimens of these algae that were buried below the photic zone exhibited an unexpected stimulation of respiration by light, resulting in an increase of local oxygen concentrations upon darkening. Net photosynthesis of the sediments varied between 1.9 and 8.5 mmol O₂ m⁻² h⁻¹ and was strongly correlated with Chl a content, which lay between 31 and 84 mg m⁻². An estimate based on our spatially limited dataset indicates that the microphytobenthic production for the entire reef is in the order of magnitude of the production estimated for corals. Photosynthesis stimulated calcification at all investigated sites (0.2–1.0 mmol Ca²⁺ m⁻² h⁻¹). The sediments of at least three stations were net calcifying. Sedimentary N₂-fixation rates (measured by acetylene reduction assays at two sites) ranged between 0.9 to 3.9 mmol N₂ m⁻² h⁻¹ and were highest in the light, indicating the importance of heterocystous cyanobacteria. In coral fingers no N₂-fixation was measurable, which stresses the importance of the sediment compartment for reef nitrogen cycling.     

Long-term stability of the fish assemblages in a warm-temperate South African estuary

Little is known about long-term changes in estuarine fish populations and related environmental variations. Fishes in the temporarily open/closed East Kleinemonde Estuary were sampled bi-annually, in summer and winter, using seine and gill nets between December 1994 and July 2005. A total of 18 families, represented by 33 species, were recorded. The 10 most abundant species caught were consistently recorded in catches each year, but CPUE of individual species varied on an annual basis and this can often be related to mouth state. Multivariate analyses of the annual marine fish community identified two distinct groups, with more species recorded during years that succeeded spring (September to November) mouth-opening events than in years following no mouth-opening events in spring. Interannual community stability (IMD) and seriation (IMS) also increased from the years following no opening events in spring to the years that succeeded spring opening events. These results highlight the importance of the timing of mouth opening to the marine fish community in a temporarily open/closed estuary. This study reinforces the importance of long-term studies to understanding community changes in estuaries caused by environmental variations over different time scales.     

Modelling and mass balance assessments of nutrient retention in a seasonally-flowing estuary (Swan River Estuary,Western Australia)

An integrated mass balance and modelling approach for analysis of estuarine nutrient fluxes is demonstrated in the Swan River Estuary, a microtidal system with strong hydrological dependence on seasonal river inflows. Mass balance components included estimation of gauged and ungauged inputs to the estuary and losses to the ocean (outflow and tidal exchange). Modelling components included estimation of atmospheric (N fixation, denitrification) and sediment–water column nutrient exchanges. Gross and net denitrification derived using two independent methods were significantly correlated (r² = 0.49, p < 0.01) with net rates averaging 40% of gross. Annual nitrogen (N) and phosphorus (P) loads from major tributaries were linearly correlated with annual freshwater discharge and were 3-fold higher in wet years than in dry years. Urban drains and groundwater contributed, on average, 26% of N inputs and 19% of P inputs, with higher relative contributions in years of low river discharge. Overall, ungauged inputs accounted for almost 35% of total nitrogen loads. For N, elevated loading in wet years was accompanied by large increases in outflow (7x) and tidal flushing (2x) losses and resulted in overall lower retention efficiency (31%) relative to dry years (70%). For P, tidal flushing losses were similar in wet and dry years, while outflow losses (4-fold higher) were comparable in magnitude to increases in loading. As a result, P retention within the estuary was not substantially affected by inter-annual variation in water and P loading (ca. 50% in all years). Sediment nutrient stores increased in most years (remineralisation efficiency ca. 50%), but sediment nutrient releases were significant and in some circumstances were a net source of nutrients to the water column.     

The oxygen isotope composition of water masses within the North Sea

Based on measurements of the ¹⁸O isotope composition of 247 samples collected over a 3-year period we have assessed the oxygen isotope composition of water masses in the North Sea. This is the first δ¹⁸O data set that covers the entire North Sea basin. The waters lie on a mixing line: δ¹⁸O (‰_VSMOW) = −9.300 + 0.274(S) with North Atlantic sub-polar mode water (SPMW) and surface waters, and Baltic Sea water representing the saline and freshwater end members respectively. Patterns exhibited in surface and bottom water δ¹⁸O distributions are representative of the general circulation of the North Sea. Oxygen-18 enriched waters from the North Atlantic enter the North Sea between Scotland and Norway and to a lesser extent through the English Channel. In contrast, oxygen-18 depleted waters mainly inflow from the Baltic Sea, the rivers Rhine and Elbe, and to a lesser degree, the Norwegian Fjords and other river sources. Locally the δ¹⁸O–salinity relationship will be controlled by the isotopic composition of the freshwater inputs. However, the range of local freshwater compositions around the North Sea basin is too narrow to characterise the relative contributions of individual sources to the overall seawater composition. This dataset provides important information for a number of related disciplines including biogeochemical research and oceanographic studies.     

Shark interactions in pelagic longline fisheries

Substantial ecological, economic and social problems result from shark interactions in pelagic longline fisheries. Improved understanding of industry attitudes and practices towards shark interactions assists with managing these problems. Information on fisher knowledge and new strategies for shark avoidance may benefit sharks and fishers. A study of 12 pelagic longline fisheries from eight countries shows that incentives to avoid sharks vary along a continuum, based on whether sharks represent an economic disadvantage or advantage. Shark avoidance practices are limited, including avoiding certain areas, moving when shark interaction rates are high, using fish instead of squid for bait and deeper setting. Some conventionally employed fishing gear and methods used to target non-shark species contribute to shark avoidance. Shark repellents hold promise; more research and development is needed. Development of specifically designed equipment to discard sharks could improve shark post release survival prospects, reduce gear loss and improve crew safety. With expanding exploitation of sharks for fins and meat, improved data collection, monitoring and precautionary shark management measures are needed to ensure that shark fishing mortality levels are sustainable.     

A probabilistic methodology to estimate future coastal flood risk due to sea level rise

In this paper we present a methodology to estimate the probability of future coastal flooding given uncertainty over possible sea level rise. We take as an example the range of sea level rise magnitudes for 2100 contained in the IPCC Third Assessment Report [Church, J.A., Gregory, J.M., Huybrechts, P., Kuhn, M., Lambeck, K., Nhuan, M.T., Qin, D., Woodworth, P.L., Anisimov, O.A., Bryan, F.O., Cazenave, A., Dixon, K.W., Fitzharris, B.B., Flato, G.M., Ganopolski, A., Gornitz, V., Lowe, J.A., Noda, A., Oberhuber, J.M., O'Farrell, S.P., Ohmura, A., Oppenheimer, M., Peltier, W.R., Raper, S.C.B., Ritz, C., Russell, G.L., Schlosser, E., Shum, C.K., Stocker, T.F., Stouffer, R.J., van de Wal, R.S.W., Voss, R., Wiebe, E.C., Wild, M., Wingham, D.J. and Zwally, H.J., 2001. Changes in sea level. In Houghton, J.T. et al. (eds), Climate Change 2001: The Scientific Basis. Contribution of Working Group I to the Third Assessment Report of the Intergovernmental Panel on Climate Change. Cambridge University Press, Cambridge, United Kingdom, 881pp.] and infer a plausible probability distribution for this range. We then use a Monte Carlo procedure to sample from this distribution and use the resulting values as an additional boundary forcing for a two-dimensional model of coastal inundation used to simulate a 1 in 200 year extreme water level event. This yields an ensemble of simulations for an event of this magnitude occurring in 2100, where each member represents a different possible scenario of sea level rise by this time. We then develop a methodology to approximate the probability of flooding in each model grid cell over the ensemble and by combining these hazards maps with maps of land use values (consequence) we are able to estimate spatial contributions to flood risk that can aid planning and investment decisions. The method is then applied to a 32 km section of the UK coast in Somerset, South-West England and used to estimate the monetary losses and risk due a 1 in 200 year recurrence interval event under: (a) current conditions; (b) with the IPCC's most plausible value for sea level rise by 2100 (0.48 m) and (c) using the above methodology to fully account for uncertainty over possible sea level rise. The analysis shows that undertaking a risk assessment using the most plausible sea level rise value may significantly underestimate monetary losses as it fails to account for the impact of low probability, high consequence events. The developed method provides an objective basis for decisions regarding future defence spending and can be easily extended to consider other sources of uncertainty such as changing event frequency–magnitude distribution, changing storm surge conditions or model structural uncertainty, either singly or in combination as joint probabilities.     

Observations of wave pump efficiency

Currently available data on wave pump efficiency is reviewed. The obtainable efficiency is an important consideration in the design of practical devices for the extraction of wave energy and the analysis of natural systems (e.g., coral flats and rip currents). We find that the peak efficiency is 0.5 for very steep (∼ 40–45°) ramps where the waves break over the top of the ramp. For flatter (< 30°) ramps, the breaking process is more gradual and the peak efficiency is less than 0.1. We have identified natural atoll lagoon systems where the flushing is wave driven and successfully modeled it as driven by a wave pump. The same is the case for rip currents. For both of these natural systems, the pump efficiency is around 0.035. In addition a numerical swash model is used to estimate wave pump efficiency and is seen to match the experimental results for natural systems or breaking wave scenario.