Reinterpreting the Importance of Oxygen‐Based Biodegradation in Chloroethene‐Contaminated Groundwater

Chlororespiration is common in shallow aquifer systems under conditions nominally identified as anoxic. Consequently, chlororespiration is a key component of remediation at many chloroethene‐contaminated sites. In some instances, limited accumulation of reductive dechlorination daughter products is interpreted as evidence that natural attenuation is not adequate for site remediation. This conclusion is justified when evidence for parent compound (tetrachloroethene, PCE, or trichloroethene, TCE) degradation is lacking. For many chloroethene‐contaminated shallow aquifer systems, however, nonconservative losses of the parent compounds are clear but the mass balance between parent compound attenuation and accumulation of reductive dechlorination daughter products is incomplete. Incomplete mass balance indicates a failure to account for important contaminant attenuation mechanisms and is consistent with contaminant degradation to nondiagnostic mineralization products like CO₂. While anoxic mineralization of chloroethene compounds has been proposed previously, recent results suggest that oxygen‐based mineralization of chloroethenes also can be significant at dissolved oxygen concentrations below the currently accepted field standard for nominally anoxic conditions. Thus, reassessment of the role and potential importance of low concentrations of oxygen in chloroethene biodegradation are needed, because mischaracterization of operant biodegradation processes can lead to expensive and ineffective remedial actions. A modified interpretive framework is provided for assessing the potential for chloroethene biodegradation under different redox conditions and the probable role of oxygen in chloroethene biodegradation.     

A community-wide intercomparison exercise for the determination of dissolved iron in seawater

The first large-scale international intercomparison of analytical methods for the determination of dissolved iron in seawater was carried out between October 2000 and December 2002. The exercise was conducted as a rigorously “blind” comparison of 7 analytical techniques by 24 international laboratories. The comparison was based on a large volume (700 L), filtered surface seawater sample collected from the South Atlantic Ocean (the “IRONAGES” sample), which was acidified, mixed and bottled at sea. Two 1-L sample bottles were sent to each participant. Integrity and blindness were achieved by having the experiment designed and carried out by a small team, and overseen by an independent data manager. Storage, homogeneity and time-series stability experiments conducted over 2.5 years showed that inter-bottle variability of the IRONAGES sample was good (< 7%), although there was a decrease in iron concentration in the bottles over time (0.8–0.5 nM) before a stable value was observed. This raises questions over the suitability of sample acidification and storage.     

A multi‐stock,length‐based assessment model for New Zealand rock lobster (Jasus Edwardsii)

We describe a multi‐stock, length‐based Bayesian assessment model for New Zealand spiny lobster (Jasus edwardsii) fisheries. This model allows simultaneous modelling of two or more stocks with a mixture of common and stock‐specific parameters: recruitment is always stock‐specific, but any other parameter can be specified as either common or stock‐specific. Common parameters are estimated from a wider base than they would be in a single‐stock model. The model's time step is flexible and can be changed during the period being modelled to accommodate better data quality in recent data. Other options include the capacity to estimate movements among stocks, allow density‐dependent growth, and choose among likelihood functions for the various data sets, between finite and instantaneous fishing dynamics and between two forms of selectivity curve.     

Nitrogen utilisation by size‐fractionated phytoplankton assemblages associated with an upwelling event off Westland,New Zealand

Abstract

Uptake rates of ammonium (NH₄ ⁺ ), nitrate (NO₃ ^? ), and urea by three subgroups of phytoplankton (< 200, < 20, < 2 μm) off Westland, were measured using ¹⁵ N tracer techniques in midwinter 1988, after a recent upwelling. For all size fractions at surface irradiance (I₁₀₀), nitrogen (N) was taken up primarily as NO₃ ^?. This accounted for 67–85% of total N uptake (SρN), whereas at 40 and 7% of surface irradiance, the regenerated N (NH₄ ⁺ ) and urea) made up 31–72% of SρN. Depth profile experiments for all three size components showed that uptake of NO₃ ^? was most light‐sensitive, followed by that of NH₄ ⁺ and urea. The irradiance and nutrient availability plot indicated that light was substantially more important than the nutrient concentrations in controlling the assimilation of N by microplankton (20–200 μm). Nano‐ (2–20 μm) and picoplankton (< 2 μm) however, were not as sensitive to either light or nutrient concentrations. High winds and the resulting deep mixing, combined with offshore and alongshore advection in the midwinter, were suggested to be the major cause of the low biomass and N productivity.     

Measurement and modeling of bed shear stress under solitary waves

Direct measurements of bed shear stresses (using a shear cell apparatus) generated by non-breaking solitary waves are presented. The measurements were carried out over a smooth bed in laminar and transitional flow regimes (~ 10⁴ < R_e < ~ 10⁵). Measurements were carried out where the wave height to water depth (h/d) ratio varied between 0.12 and 0.68; maximum near bed velocity varied between 0.16 m/s and 0.51 m/s and the maximum total shear stress (sum of skin shear stress and Froude–Krylov force) varied between 0.386 Pa and 2.06 Pa. The total stress is important in determining the stability of submarine sediment and in sheet flow regimes. Analytical modeling was carried out to predict total and skin shear stresses using convolution integration methods forced with the free stream velocity and incorporating a range of eddy viscosity models. Wave friction factors were estimated from skin shear stress at different instances over the wave (viz., time of maximum positive total shear stress, maximum skin shear stress and at the time of maximum velocity) using both the maximum velocity and the instantaneous velocity at that phase of the wave cycle. Similarly, force coefficients obtained from total stress were estimated at time of maximum positive and negative total stress and at maximum velocity. Maximum positive total shear stress was approximately 1.5 times larger than minimum negative total stress. Modeled and measured positive bed shear stresses are well correlated using the best convolution model, but the model underestimates the data by about 4%. Friction factors are dependent on the choice of normalizing using the maximum velocity, as is conventional, or the instantaneous velocity. These differ because the stress is not in phase with the velocity in general. Friction factors are consistent with previous data for monochromatic waves, and vary inversely with the square-root of the Reynolds number. The total shear stress leads the free stream fluid velocity by approximately 50°, whereas the skin friction shear stress leads by about 30°, which is similar to that reported by earlier researchers.     

Pelagic-Benthic Coupling in the Nordic Seas: The Role of Episodic Events

Abstract. The consequences of the following episodic phenomena for the pelagic-benthic coupling in the Nordic Seas are illustrated: (1) Advection of water masses between fjords and shelf environments, (2) freshwater run-off and vertical stability, (3) dynamics of the marginal ice zone in the central and northern Barents Sea and the Polar Ocean, (4) drift patterns of sinking particles along the North Norwegian coast, (5) advection of zooplankton into subarctic fjords and the southern Barents Sea, zooplankton overwintering and composition, and (6) transport of organic particulate matter from the Barents Sea shelf. It is shown that physical processes in the north-eastern North Atlantic and Polar Ocean can be strongly variable on time scales of days to decades. They have a significant influence on the dynamics of pelagic-benthic coupling. The physical oceanography influences the vertical and horizontal particle flux not only directly (mixing, advection, up- and down-welling), but also indirectly through its impact on the biota (for example radiation, wind, ice cover, freshwater run-off and overwintering, advection and retention of zooplankton). Understanding pelagic-benthic coupling at high latitudes depends even more on a best possible understanding of the physical oceanography and the time scales involved than elsewhere.     

Industry participation in stock assessment: the New Zealand SNA1 snapper (Pagrus auratus) fishery

We describe industry funded contributions to the assessment of the SNA1 snapper (Pagrus auratus) fishery during the 1990s and discuss the advantages and disadvantages of industry funded research. We also provide background on the history of fisheries management in New Zealand, on the current assessment and management processes, and on the SNA1 snapper fishery. In the SNA1 fishery, the contributions of industry and the cooperation with Government scientists has resulted in high quality assessments. In our opinion, the advantages of industry funded research out weigh the disadvantages and suggest that industry funded assessments are highly desirable and should be an integral part of any management system.     

North Pacific Synthesis of the Joint Global Ocean Flux Study: Overview

This special issue is comprised of 13 papers, including this overview, and focuses on the synthesis of the Joint Global Ocean Flux Study (JGOFS) in the North Pacific which took place from 1997 through 2003. The effort was led by the JGOFS North Pacific Synthesis Group, with the aim of quantifying CO₂ drawdown by physical and biological pumps in the North Pacific by identifying and studying the regional, seasonal to inter-annual variations in the key processes, and understanding their regulating mechanisms. Emphasis was placed on the similarities and differences of the biogeochemical regimes in the eastern and western subarctic Pacific. Effort was also made to address the future research directions which arose from the scientific findings during the North Pacific JGOFS process study. A brief overview of the papers from view points of CO₂ drawdown by physical and biological pumps, spatial variability, and temporal variability from seasonal to decadal scales is made, followed by suggestions for the directions of future research. This revised version was published online in July 2006 with corrections to the Cover Date.