Assessment of cytochrome P450 1A in harbour seals (Phoca vitulina) using a minimally-invasive biopsy approach

Biomarkers of organochlorine exposure, such as the induction of cytochrome P450 1A (CYP1A), can be used to assess the impact of environmental contaminants on the health of free-ranging marine mammal populations. The objective of the present study was to measure CYP1A in skin and liver biopsies obtained from live harbour seals (Phoca vitulina). Twelve harbour seal pups, aged three to five weeks, were captured from the Fraser River estuary, British Columbia, Canada, and temporarily held in captivity. Skin ( approximately 60 mg) and liver ( approximately 40 mg) biopsies, obtained while seals were under general anaesthesia, yielded sufficient tissue for the measurement of CYP1A by immunoblot analysis and ethoxyresorufin O-deethylase activity. A short-term exposure experiment, in which harbour seals (n=3) were treated orally with beta-naphthoflavone (BNF), resulted in increased hepatic and cutaneous CYP1A protein levels, consistent with observations in other mammals. This study is the first to measure CYP1A in skin and liver biopsies from live harbour seals and to report in vivo BNF-associated CYP1A induction in a marine mammal. The results demonstrate that microsamples collected using minimally-invasive techniques can provide toxicologically-relevant information form marine mammals.     

Influence of relative sea level changes on the construction of the Mississippi Fan

A conceptual sea-level-driven depositional model for individual fanlobes (channel-overbank systems) of the Mississippi Fan does not permit direct application of the sequence stratigraphic principles of Vail and colleagues. Deep Sea Drilling Project Leg 96 results suggest that, during initial relative lowering of sea level, the canyon and upper fan channel were formed; excavated fine-grained slope sediments may have formed a debris flow deposit base for the fanlobe. Continued lowering produced constructional channel-levee-overbank deposits. Rising relative sea level inhibited input of coarse clastics, and channel depressions filled with muds. A blanket of (hemi)pelagics represents relative high sea level stand.     

Circulation and currents in the southwestern East/Japan Sea: Overview and review

A review is made of circulation and currents in the southwestern East/Japan Sea (the Ulleung Basin), and the Korea/Tsushima Strait which is a unique conduit for surface inflow into the Ulleung Basin. The review particularly concentrates on describing some preliminary results from recent extensive measurements made after 1996. Mean flow patterns are different in the upstream and downstream regions of the Korea/Tsushima Strait. A high velocity core occurs in the mid-section in the upstream region, and splits into two cores hugging the coasts of Korea and Japan, the downstream region, after passing around Tsushima Island located in the middle of the strait. Four-year mean transport into the East/Japan Sea through the Korea/Tsushima Strait based on submarine cable data calibrated by direct observations is 2.4 Sv (1 Sv = 10⁶ m³ s⁻¹). A wide range of variability occurs for the subtidal transport variation from subinertial (2–10 days) to interannual scales. While the subinertial variability is shown to arise from the atmospheric pressure disturbances, the longer period variation has been poorly understood.Mean upper circulation of the Ulleung Basin is characterized by the northward flowing East Korean Warm Current along the east coast of Korea and its meander eastward after the separation from the coast, the Offshore Branch along the coast of Japan, and the anticyclonic Ulleung Warm Eddy that forms from a meander of the East Korean Warm Current. Continuous acoustic travel-time measurements between June 1999 and June 2001 suggest five quasi-stable upper circulation patterns that persist for about 3–5 months with transitions between successive patterns occurring in a few months or days. Disappearance of the East Korean Warm Current is triggered by merging the Dok Cold Eddy, originating from the pinching-off of the meander trough, with the coastal cold water carried Southward by the North Korean Cold Current. The Ulleung Warm Eddy persisted for about 20 months in the middle of the Ulleung Basin with changes in its position and spatial scale associated with strengthening and weakening of the transport through the Korea/Tsushima Strait. The variability of upper circulation is partly related to the transport variation through the Korea/Tsushima Strait. Movements of the coastal cold water and the instability of the polar front also appear to be important factors affecting the variability.Deep circulation in the Ulleung Basin is primarily cyclonic and commonly consists of one or more cyclonic cells, and an anticyclonic cell centered near Ulleung Island. The cyclonic circulation is conjectured to be driven by a net inflow through the Ulleung Interplain Gap, which serves as a conduit for the exchange of deep waters between the Japan Basin in the northern East Sea and the Ulleung Basin. Deep currents are characterized by a short correlation scale and the predominance of mesoscale variability with periods of 20–40 days. Seasonality of deep currents is indistinct, and the coupling of upper and deep circulation has not been clarified yet.     

Simplified limit solutions for the capacity of suction anchors under undrained conditions

Upper bound plastic limit analyses (PLA) can provide a useful framework for estimating the load capacity of suction caisson anchors in purely cohesive soils. Since arbitrary assumptions regarding the soil stress state are not required in the PLA formulation, it may be used with greater consistency compared to other simplified approaches such as limit equilibrium methods. While PLA methods do not attempt to include all of the complexities of anchor behavior, they can provide a relatively simple framework for visualizing anchor kinematics leading to an understanding of the relative importance of various parameters on suction anchor load capacity. The most rigorous PLA formulations involve postulating a three-dimensional anchor-soil failure mechanism and deriving expressions for internal energy dissipation throughout the mechanism. This approach can involve extensive numerical integrations and a relatively complex scheme for optimizing the failure mechanism to obtain a least upper bound collapse load. Considerable simplification is possible if the problem is formulated in terms of ultimate unit resistances (lateral, axial, and their interaction) that can be exerted by the soil on the caisson. In this case, the caisson failure mechanism can be characterized in terms of one or two optimization variables. Simple expressions for the ultimate unit resistances acting on the caisson can be obtained from several sources including rigorous PLA solutions, finite element techniques, or experimental measurements. General expressions are possible by limiting consideration to common, idealized strength profiles such as uniform or constant gradient. Such simplified formulations are particularly valuable for providing an analysis tool accessible to practicing engineers. Suction caisson anchors can be subjected to a variety of load orientations including nearly vertical uplift forces imposed by the vertical tendons of tension leg platforms, horizontal loads imposed by catenary mooring systems, and inclined loads imposed by taut moorings. Recently, PLA methods have been applied to the analysis of suction caissons subjected to this range of loading conditions. This paper reviews the formulation of these analyses and summarizes the most significant findings.     

Automated Kerogen Classification in Microscope Images of Dispersed Kerogen Preparation

We develop the classification part of a system that analyses transmitted light microscope images of dispersed kerogen preparation. The system automatically extracts kerogen pieces from the image and labels each piece as either inertinite or vitrinite. The image pre-processing analysis consists of background removal, identification of kerogen material, object segmentation, object extraction (individual images of pieces of kerogen) and feature calculation for each object. An expert palynologist was asked to label the objects into categories inertinite and vitrinite, which provided the ground truth for the classification experiment. Ten state-of-the-art classifiers and classifier ensembles were compared: Naïve Bayes, decision tree, nearest neighbour, the logistic classifier, multilayered perceptron (MLP), support vector machines (SVM), AdaBoost, Bagging, LogitBoost and Random Forest. The logistic classifier was singled out as the most accurate classifier, with an accuracy greater than 90. Using a 10 times 10-fold cross-validation provided within the Weka software, we found that the logistic classifier was significantly better than five classifiers (p<0.05) and indistinguishable from the other four classifiers. The initial set of 32 features was subsequently reduced to 6 features without compromising the classification accuracy. A further evaluation of the system alerted us to the possible sensitivity of the classification to the ground truth that might vary from one human expert to another. The analysis also revealed that the logistic classifier made most of the correct classifications with a high certainty.     

Variation in the composition of Lake Bonneville marl: a potential key to lake-level fluctuations and paleoclimate

Lake Bonneville marl provides a stratigraphic record of lake history preserved in its carbonate minerals and stable isotopes. We have analyzed the marl in shallow cores taken at three localities in the Bonneville basin. Chronology for the cores is provided by dated volcanic ashes, ostracode biostratigraphy, and a distinctive lithologic unit believed to have been deposited during and immediately after the Bonneville Flood.A core taken at Monument Point at the north shore of Great Salt Lake encompasses virtually the entire Bonneville lake cycle, including the 26.5 ka Thiokol basaltic ash at the base and deposits representing the overflowing stage at the Provo shoreline at the top of the core. Two cores from the Old River Bed area near the threshold between the Sevier basin and the Great Salt Lake basin (the main body of Lake Bonneville) represent deposition from the end of the Stansbury oscillation ( 20 ka) to post-Provo time ( 13 ka), and one core from near Sunstone Knoll in the Sevier basin provides a nearly complete record of the period when Lake Bonneville flooded the Sevier basin (20–13 ka).In all cores, percent calcium carbonate, the aragonite to calcite ratio, and percent sand were measured at approximately 2-cm intervals, and ¹⁸O and ¹³C were determined in one core from the Old River Bed area. The transgressive period from about 20 ka to 15 ka is represented in all cores, but the general trends and the details of the records are different, probably as a result of water chemistry and water balance differences between the main body and the Sevier basin because they were fed by different rivers and had different hypsometries. The Old River Bed marl sections are intermediate in position and composition between the Monument Point and Sunstone Knoll sections. Variations in marl composition at the Old River Bed, which are correlated with lake-level changes, were probably caused by changes in the relative proportions of water from the two basins, which were caused by shifts in water balance in the lake.This is the second paper in a series of papers published in this issue on Climatic and Tectonic Rhythms in Lake Deposits.     

Large,solid particles in the clouds of Venus: Do they exist?

The discovery of large, solid particles in the clouds of Venus is one of the most significant findings of Pioneer Venus because it means that a substantial mass of the clouds is composed of a material other than sulfuric acid. The evidence which suggests that solid particles form a distinctive size mode is reexamined. The mode is defined by a discontinuity between two size ranges of the Pioneer Venus particle size spectrometer. This discontinuity could represent a real size mode. However, it could also be an artifact of the measurement technique. R. G. Knollenberg (1984) discusses several possible instrumental effects which might have caused this discontinuity. It is hypothesized herein that such effects did occur and that the large particles are really the tail of the mode 2 sulfuric acid particle size distribution and are not a separate mode of solid particles. Using such a revised size distribution, it is shown that all of the Pioneer Venus and Venera optical data from the lower clouds can be explained with sulfuric acid droplets without introducing any solid particles. As a by-product of this analysis, it is also found that the upper clouds of Venus must contain a material with a higher refractive index than sulfuric acid. A small quantity of sulfur could account for this observation.     

Solar irradiance changes caused by g-modes and large scale convection

Solar irradiance measurements from the ACRIM experiment show a clear response to the rotation periods of g-mode oscillations (l = 1, 2, and 3) and their first harmonics. Peaks in the ACRIM spectrum at 16.6, 18.3, 20.7, 36.5, and - 71 days all lie within about 1% of periods arising from g-mode rotation. This means that the g-modes are a fundamental cause of irradiance fluctuations. On time scales of months and less they modulate the irradiance by means of transient flows of global scale which they stimulate in the Sun's convective envelope. Dimensional arguments indicate that the flows carry up heat at an average rate 10^-3 L which is not in conflict with observed changes in the irradiance. Five additional tests for g-modes and large-scale convection are given. An instability is described which undermines diffusion models of sunspot energy storage.     

Velocity dispersion profiles ofN-body simulations

The time evolution of the velocity dispersion as a function of radius, called v-profiles, of threeN-body simulations of Wielen are presented in units ofr/R _G (whereR _G is the gravitational or virial radius) and discussed as a function of mass sample. The evolution of the radial and tangential components of the velocity dispersion is discussed, and each v-profile is fitted to a simple power law in the halo (0.15r/R _G2.0). Several structural features appear at late time intervals: (a) an upturn in the radial component of v which occurs in a decreasing shell (closer to the core) in time, (b) the v-profile of the massive particles mimics that of the total sample, since equipartition of kinetic energy does not obtain, and (c) a local minimum atr0.3–0.5R _G appears in one model which coincides with the local minimum in the number density profiles and possibly with feature (a).The line-of-sight v-profile, called LS-profile, of each model as a function of time and mass sample are also presented and discussed. They contain the same structural features as the v-profiles. Projection factors at small radii are also discussed. The LS-profiles of the models can be compared with the observed velocity dispersion profiles of clusters of galaxies in Struble (1979a).