Mean and Turbulent Flow Statistics in a Trellised Agricultural Canopy

Flow physics is investigated in a two-dimensional trellised agricultural canopy to examine that architecture’s unique signature on turbulent transport. Analysis of meteorological data from an Oregon vineyard demonstrates that the canopy strongly influences the flow by channelling the mean flow into the vine-row direction regardless of the above-canopy wind direction. Additionally, other flow statistics in the canopy sub-layer show a dependance on the difference between the above-canopy wind direction and the vine-row direction. This includes an increase in the canopy displacement height and a decrease in the canopy-top shear length scale as the above-canopy flow rotates from row-parallel towards row-orthogonal. Distinct wind-direction-based variations are also observed in the components of the stress tensor, turbulent kinetic energy budget, and the energy spectra. Although spectral results suggest that sonic anemometry is insufficient for resolving all of the important scales of motion within the canopy, the energy spectra peaks still exhibit dependencies on the canopy and the wind direction. These variations demonstrate that the trellised-canopy’s effect on the flow during periods when the flow is row-aligned is similar to that seen by sparse canopies, and during periods when the flow is row-orthogonal, the effect is similar to that seen by dense canopies.     

Dissolved organic matter variations in coastal plain wetland watersheds: The integrated role of hydrological connectivity,land use,and seasonality

Dissolved organic matter (DOM) is integral to fluvial biogeochemical functions, and wetlands are broadly recognized as substantial sources of aromatic DOM to fluvial networks. Yet how land use change alters biogeochemical connectivity of upland wetlands to streams remains unclear. We studied depressional geographically isolated wetlands on the Delmarva Peninsula (USA) that are seasonally connected to downstream perennial waters via temporary channels. Composition and quantity of DOM from 4 forested, 4 agricultural, and 4 restored wetlands were assessed. Twenty perennial streams with watersheds containing wetlands were also sampled for DOM during times when surface connections were present versus absent. Perennial watersheds had varying amounts of forested wetland (0.4–82%) and agricultural (1–89%) cover. DOM was analysed with ultraviolet–visible spectroscopy, fluorescence spectroscopy, dissolved organic carbon (DOC) concentration, and bioassays. Forested wetlands exported more DOM that was more aromatic‐rich compared with agricultural and restored wetlands. DOM from the latter two could not be distinguished suggesting limited recovery of restored wetlands; DOM from both was more protein‐like than forested wetland DOM. Perennial streams with the highest wetland watershed cover had the highest DOC levels during all seasons; however, in fall and winter when temporary streams connect forested wetlands to perennial channels, perennial DOC concentrations peaked, and composition was linked to forested wetlands. In summer, when temporary stream connections were dry, perennial DOC concentrations were the lowest and protein‐like DOM levels the highest. Overall, DOC levels in perennial streams were linked to total wetland land cover, but the timing of peak fluxes of DOM was driven by wetland connectivity to perennial streams. Bioassays showed that DOM linked to wetlands was less available for microbial use than protein‐like DOM linked to agricultural land use. Together, this evidence indicates that geographically isolated wetlands have a significant impact on downstream water quality and ecosystem function mediated by temporary stream surface connections.     

Runup uncertainty on planar beaches

Parameterization of wave runup is of paramount importance for an assessment of coastal hazards. Parametric models employ wave (e.g., H_s and L_p) and beach (i.e., β) parameters to estimate extreme runup (e.g., R_2%). Thus, recent studies have been devoted to improving such parameterizations by including additional information regarding wave forcing or beach morphology features. However, the effects of intra-wave dynamics, related to the random nature of the wave transformation process, on runup statistics have not been incorporated. This work employs a phase- and depth- resolving model, based on the Reynolds-averaged Navier-Stokes equations, to investigate different sources of variability associated with runup on planar beaches. The numerical model is validated with laboratory runup data. Subsequently, the role of both aleatory uncertainty and other known sources of runup variability (i.e., frequency spreading and bed roughness) is investigated. Model results show that aleatory uncertainty can be more important than the contributions from other sources of variability such as the bed roughness and frequency spreading. Ensemble results are employed to develop a new parametric model which uses the Hunt (J Waterw Port Coastal Ocean Eng 85:123–152, 1959) scaling parameter \(\beta \left (H_{s}L_{p}\right )^{1/2}\).

     

Optical dating and soil micromorphology at MacCauley's Beach,New South Wales,Australia

The ability to position landscapes in a context of time and space is a particular goal of Quaternary science research. The lack of context for dating samples published previously for MacCauley's Beach, an important site for the reconstruction of Australian sea levels, warranted a re‐evaluation of both the site stratigraphy and chronology. In this study, we combined optically stimulated luminescence (OSL) dating of sedimentary quartz grains and soil micromorphology of the same samples to improve our understanding of the depositional history and chronology of the sediments. This combination allowed the contextualization of samples not only in time and space, but also in terms of their depositional histories. The latter is important in OSL dating, where pre‐, syn‐ and post‐depositional processes can all influence the accuracy and precision of the final age estimates. The sediment profile at MacCauley's Beach is made up of three major units. The basal mottled mud layer has undergone extensive pedogenesis since deposition, and only a minimum age of 14.7 ± 2.7 ka could be calculated. The overlying grey mud, with OSL ages from the bottom and top of the unit of 10.0 ± 0.7 and 7.7 ± 0.5 ka, respectively, shows evidence of soil structure collapse. This unit correspond to the onset of the mid‐Holocene sea‐level high stand for this region. The overlying sand layer was first deposited at 7.5 ± 0.4 ka, with deposition continuing beyond 6.6 ± 0.4 ka. Not only does the chronology presented constrain the timing of deposition (and the extent of post‐depositional processes) at MacCauley's Beach, but the methodological approach used here can be applied to any site to aid in the interpretation of formation processes and assess their influence on OSL age determination. Copyright © 2014 John Wiley & Sons, Ltd.     

Evaluating local population dynamics of the American lobster,Homarus americanus,with trap‐based mark‐recapture methods and seabed mapping

Seabed mapping, spatially referenced trapping, and mark‐recapture methods have all been useful tools in ecological studies of lobsters and other benthic animals. Here we integrate the three methods to evaluate local population dynamics and movements of American lobsters, Homarus americanus, in coastal fishing grounds in Maine, United States. The study was conducted on five study areas of different size, and used two different sampling protocols. At one site (1 km² in area) we used a monthly mark‐recapture sampling interval over a 6‐month period, only tagging a subsample of the catch. At four smaller sites (0.3 km²) we used a shorter‐term approach, sampling at 3–4‐day intervals for a 2‐week duration, tagging the entire catch. Tagging data were analysed with a modified Jolly‐Seber model adapted for continuous sampling to estimate population abundance, gains (immigration), and losses (emigration and mortality). Side‐scan sonar surveys of the seabed combined with diver‐based population surveys, stratified by substrate type, provided an independent comparison to mark‐recapture‐based estimates of abundance over the same areas. Spatial referencing of trap catch also allowed us to relate catch rates and lobster movements directly to seabed features. The longer‐term tagging data on the larger study area provided abundance estimates that were more consistent with the diver observations, and estimates of gains and losses statistically more robust, than those derived from the shorter‐term effort on the smaller sites. The flux of lobsters followed the well known seasonal movements on these fishing grounds, with gains and losses from the larger study area ranging over 1000 individuals per day, and an estimated mid‐summer peak density of >65 000 lobsters per km² (individuals >50 mm carapace length). This approach may lend itself to broader application with the American lobster.     

ADMESH:?An advanced, automatic unstructured mesh generator for shallow water models

In this paper, we present the development and application of a two-dimensional, automatic unstructured mesh generator for shallow water models called Admesh. Starting with only target minimum and maximum element sizes and points defining the boundary and bathymetry/ topography of the domain, the goal of the mesh generator is to automatically produce a high-quality mesh from this minimal set of input. From the geometry provided, properties such as local features, curvature of the boundary, bathymetric/topographic gradients, and approximate flow characteristics can be extracted, which are then used to determine local element sizes. The result is a high-quality mesh, with the correct amount of refinement where it is needed to resolve all the geometry and flow characteristics of the domain. Techniques incorporated include the use of the so-called signed distance function, which is used to determine critical geometric properties, the approximation of piecewise linear coastline data by smooth cubic splines, a so-called mesh function used to determine element sizes and control the size ratio of neighboring elements, and a spring-based force equilibrium approach used to improve the element quality of an initial mesh obtained from a simple Delaunay triangulation. Several meshes of shallow water domains created by the new mesh generator are presented.