Defining organominerals: Comment on ‘Defining biominerals and organominerals: Direct and indirect indicators of life’ by Perry et al. (2007, Sedimentary Geology, 201, 157–179)

The paper by Perry et al. (2007, Defining biominerals and organominerals: Direct and indirect indicators of life, Sedimentary Geology, 201, 157–179) proposes to introduce “the new term ‘organomineral’” to describe mineral products whose formation is induced by by-products of biological activity, dead and decaying organisms, or nonbiological organic compounds, to be distinguished from the biomineral components of living organisms. The substantive ‘organomineral’, however, is not new: it was first introduced in 1993, with basically the same definition and distinction from biominerals, at the 7th International Symposium on Biomineralization (Défarge and Trichet, 1995, From biominerals to ‘organominerals’: The example of the modern lacustrine calcareous stromatolites from Polynesian atolls, Bulletin de l'Institut Océanographique de Monaco, n° spéc. 14, vol. 2, pp. 265–271). Thereafter, more than twenty-five papers by various authors have been devoted to organominerals and organomineral formation (‘organomineralization’) processes. Only two of these papers are cited by Perry et al., and without any reference to the definitions, or even the terms ‘organomineral’ or ‘organomineralization’, which they included. Moreover, Perry et al. tend to enlarge the original concept of organomineral to encompass all minerals containing organic matter, whether these organic compounds are active or passive in the mineralization, which introduces ambiguities detrimental to a fine understanding of present and past geobiological processes. Finally, Perry et al. propose to consider organominerals as indirect biosignatures that could be used in the search for evidence of life in the geological record and extraterrestrial bodies. This latter proposition also is problematical, in that organominerals may be formed in association with prebiotic or abiotic organic matter.     

Large-scale distributed deformation controlled topography along the western Africa–Eurasia limit: Tectonic constraints

In the interior of the Iberian Peninsula, the main geomorphic features, mountain ranges and basins, seems to be arranged in several directions whose origin can be related to the N–S plate convergence which occurred along the Cantabro–Pyrenean border during the Eocene–Lower Miocene time span. The Iberian Variscan basement accommodated part of this plate convergence in three E–W trending crustal folds as well as in the reactivation of two left-lateral NNE–SSW strike-slip belts. The rest of the convergence was assumed through the inversion of the Iberian Mesozoic Rift to form the Iberian Chain. This inversion gave rise to a process of oblique crustal shortening involving the development of two right lateral NW–SE shear zones. Crustal folds, strike-slip corridors and one inverted rift compose a tectonic mechanism of pure shear in which the shortening is solved vertically by the development of mountain ranges and related sedimentary basins. This model can be expanded to NW Africa, up to the Atlasic System, where N–S plate convergence seems also to be accommodated in several basement uplifts, Anti-Atlas and Meseta, and through the inversion of two Mesozoic rifts, High and Middle Atlas. In this tectonic situation, the microcontinent Iberia used to be firmly attached to Africa during most part of the Tertiary, in such a way that N–S compressive stresses could be transmitted from the collision of the Pyrenean boundary. This tectonic scenario implies that most part of the Tertiary Eurasia–Africa convergence was not accommodated along the Iberia–Africa interface, but in the Pyrenean plateboundary. A broad zone of distributed deformation resulted from the transmission of compressive stresses from the collision at the Pyrenean border. This distributed, intraplate deformation, can be easily related to the topographic pattern of the Africa–Eurasia interface at the longitude of the Iberian Peninsula.Shortening in the Rif–Betics external zones – and their related topographic features – must be conversely related to more “local” driven mechanisms, the westward displacement of the “exotic” Alboran domain, other than N–S convergence. The remaining NNW–SSE to NW–SE, latest Miocene up to Present convergence is also being accommodated in this zone straddling Iberia and Morocco, at the same time as a new ill-defined plate boundary that is being developed between Europe and Africa.     

Seasonality change and the third millennium BP rainforest crisis in southern Cameroon (Central Africa)

The third millennium BP crisis of the central African rainforest is not sufficiently understood. The low resolution of most pollen profiles and a large plateau of the calibration curve aggravate the exact dating of the event, and its causal climatic parameters are debated. We present a high-resolution pollen profile from the swamp site Nyabessan in the southern Cameroonian rainforest, covering the period 3100-2300 cal yr BP. Between 3100 and 2500 cal yr BP, the climate was favourable for a regional evergreen forest with Caesalpiniaceae and Lophira and a local Raphia swamp forest. Around 2500/2400 cal yr BP, a significant decrease of mature forest and swamp forest taxa and an increase of pioneers indicate that the rain forest was seriously disturbed and replaced by secondary formations. The dominance of Trema orientalis, a pioneer well adapted to seasonal desiccation, points to a much more accentuated seasonality after 2500 cal yr BP, which seems to be linked to a southwards shift of the ITCZ during the northern hemisphere winter months. We propose that the rain forest crisis between 2500 and 2200 cal BP created favourable conditions for farming and paved the way for a major expansion of Bantu speaking populations.     

Isolation,biodegradation ability and molecular detection of hydrocarbon degrading bacteria in petroleum samples from a Brazilian offshore basin

The detection of microorganisms with potential for biodeterioration and biodegradation in petroleum fields is of great relevance, since these organisms may be related to a decrease in petroleum quality in the reservoirs or damage in the production facilities. In this sense, petroleum formation water and oil samples were collected from the Campos Basin, Brazil, with the aim of isolating microorganisms and evaluating their ability to degrade distinct classes of hydrocarbon biomarkers (9,10-dihydrophenanthrene, phytane, nonadecanoic acid and 5α-cholestane). Twenty eight bacterial isolates were recovered and identified by sequencing their 16S rRNA genes. Biodegradation assays revealed that bacterial metabolism of hydrocarbons occurred through reactions based on oxidation, carbon–carbon bond cleavage and generation of new bonds or by the physical incorporation of hydrocarbons into microbial cell walls. Based on the biodegradation results, selective PCR-based systems were developed for direct detection in petroleum samples of bacterial groups of interest, namely Bacillus spp., Micrococcus spp., Achromobacter xylosoxidans, Dietzia spp. and Bacillus pumilus. Primer sets targeting 16S rRNA genes were designed and their specificity was confirmed in silico (i.e. computational analysis) and in PCR reactions using DNA from reference strains as positive and negative controls. Total DNA from oil was purified and the amplification tests revealed the presence of the target bacteria in the samples, unraveling a significant potential for petroleum deterioration in the reservoirs sampled, once proper conditions are present for hydrocarbon degradation. The application of molecular methods for rapid detection of specific microorganisms in environmental samples would be valuable as a supporting tool for the evaluation of oil quality in production reservoirs.     

First evidence of Campanian radiolarians in Turkey and implications for the tectonic setting of the Upper Antalya Nappes

The definition and inventory of the upper units of the Antalya Nappes or “Calcareous Antalya Nappes” (CAN) are still a matter of controversies and often conflicting interpretations. In the Gedeller type locality, we logged a new succession that sheds light on the detailed stratigraphy of the Upper Antalya Nappes. The lower part of the series corresponds to the uppermost part of the Kemer Gorge Nappe and is overthrust by the Ordovician Seydişehir Formation of the Tahtalı Dağ Nappe. The newly described Gedeller Formation belongs to the Kemer Gorge Nappe and is represented by Campanian (Upper Cretaceous) Scaglia-type pelagic limestones, which yielded radiolarians of the Amphipyndax pseudoconulus Zone. It is demonstrated that the “Calcareous Antalya Nappes” are composed of three different nappes, the Kemer Gorge, Bakırlı and the Tahtalı Dağ nappes, all of them belonging to the Upper Antalya Nappes system.     

Recent sediment transport and accumulation on the NW Iberian margin

Five transects across the NW Iberian margin were studied in the framework of the EU-funded Ocean Margin EXchange II (OMEX II) project, to determine and establish recent sediment and organic carbon transport and accumulation processes and fluxes.On the Galician shelf and shelf edge, resuspension of sediments resulting in well-developed bottom nepheloid layers was observed at all stations, but transport of suspended sediment appears largely confined to the shelf. On the continental slope, only very dilute bottom nepheloid layers were present, and intermediate nepheloid layers were only occasionally seen. This suggests that cross-slope transfer of particles is limited by the prevailing northerly directed shelf and slope currents.Optical backscatter and ADCP current measurements by the BOBO lander, deployed at 2152 m depth on the Galician slope, indicated that particles in the bottom boundary layer were kept in suspension by tidal currents with highest speeds between 15–25 cm s⁻¹. Net currents during the recording period August 6th–September 10th 1998, were initially directed along-slope toward the NNW, but later turned off-slope toward the SW.The separation of the water masses on the slope from the sediment-laden shelf water by the along-slope current regime is reflected in the recent sedimentary deposits of the Galician shelf and slope. Apart from compositional differences, shelf deposits differ from those on the slope by their higher flux of excess ²¹⁰Pb (0.57–5.37 dpm cm⁻²y⁻¹ versus 0.11–3.00 dpm cm⁻²y⁻¹), a much higher sediment accumulation rate (315.6–2295.9 g m⁻²y⁻¹ versus 10.9–124.7 g m⁻²y⁻¹) and organic carbon burial rate (1.01–34.30 g m⁻²y⁻¹ versus 0.01–0.69 g m⁻²y⁻¹).In contrast to the observations on the Galician margin, pronounced nepheloid layers occurred in the Nazaré Canyon, which extended to considerably greater water depths. This indicates that significantly greater transport of fine-grained particles in both the INL and the BNL was occurring within the canyon, as reflected in the exceptionally high ²¹⁰Pb excess flux (up to 34.09 dpm cm⁻²y⁻¹), mass accumulation rates (maximum 9623.1 g m⁻²y⁻¹) and carbon burial fluxes (up to 180.91 g m⁻²y⁻¹) in the sediment. However, radioisotope fluxes in the lower canyon were only slightly higher than at comparable depths on the Galician margin. This suggests that transport and rapid accumulation is focused on the upper and middle part of the canyon, from where it is episodically released to the deep sea. Compared to the Galician margin, the Nazaré Canyon may be considered as an important organic carbon depocenter on short time-scales, and a major conduit for particulate matter transport to the deep sea on >100 y time-scales.     

Objectives of fisheries management: case studies from the UK, France, Spain and Denmark

The main objectives of fisheries management are generally similar throughout the world. These are often stated in policy documents such as the Common Fisheries Policy and the Magnuson–Stevens Fishery Conservation and Management Act. However, at the local level often the key objectives of management are more detailed, characterised by both the overriding management structure and the status and type of fishery concerned. In this paper, we consider case study fisheries from the UK, France, Spain and Denmark to compare some of the various types of fisheries and fisheries management systems that exist in the European Union. From this, we define the key objectives for each management system.     

Investigating Ionospheric Scintillation Effects on Multifrequency GPS Signals

Surveys in Geophysics - Over the last 15 years, the satellite constellation of the global positioning system (GPS) has been modernized for more precise applications, with the introduction...     

Water Availability of Sub-Basins with Restrictions on Use under Climate Change Scenarios in Brazil

Water Resources - The Queima Pé Stream Basin (QPSB) and Ararão River Basin (ARB) in central Brazil have had recurrent problems with water scarcity. This may get worse under anthropogenic...