Spatio-temporal variation of suspended and sedimentary organic matter quality in the Bay of Marseilles (NW Mediterranean) assessed by biochemical and isotopic analyses

Isotopic and biochemical features of suspended particulate organic matter (POM) in the water column and of sedimentary organic matter (SOM) were investigated seasonally in the Bay of Marseilles. Biochemical compounds (carbohydrates, lipids and proteins) were consistently more concentrated in POM than in SOM, with SOM mainly composed of insoluble carbohydrates. POM displayed lower δ(13)C and higher δ(15)N values than SOM. Phytoplanktonic production represented the major contributor of POM year-round with spatial and seasonal variations. Climatic parameters and wind-induced currents created differences in POM contributions, with more important inputs of terrestrial OM at one sampling site. Spatial and seasonal variations were lower for SOM. The composition of this pool appeared to be linked with the permanent inputs of phytoplankton and Posidonia oceanica detritus. The combined use of biochemical and isotopic analyses was a useful tool to characterize OM pools and would help understanding the trophic functioning of this coastal environment.     

Thermo-mechanical ratcheting in soil–structure interfaces

Acta Geotechnica - This paper proposes and validates a thermo-mechanical ratcheting mechanism that explains the cumulative displacement of soil–continuum interfaces when subjected to...     

Isolation and characterization of Aeromonas species from an eutrophic tropical estuary

Isolation and characterization of Aeromonas species were undertaken in the Ebrié lagoon (Abidjan, Côte d’Ivoire) over a one year period. Overall 63% of 501 water samples were identified as positive for Aeromonas spp. A. sobria, A. hydrophila and A. caviae represent respectively 49.20%, 20.63% and 30.15% of the positive samples. Thirty nine of the positive samples were recovered from surface water samples; while 24 bottom water samples were positive for Aeromonas. Aeromonas species are most frequently (82.53) present in the Ebrié lagoon urban area during the rainy and flood seasons when the salinity is low and below 10‰. A lower isolation frequency is noticed during the dry season when water salinity is over 10‰. Finally, a higher isolation frequency occurred in samples with highest counts of Escherichia coli.     

Influence of water mixing on the inhibitory effect of UV radiation on primary and bacterial production in Mediterranean coastal water

The scaling of the solar ultraviolet radiation (UVR, 280–400 nm) effect on phyto- and bacterio-plankton at the ecosystem level is difficult since its estimate is often based on short-time incubation experiments performed at fixed depths, neglecting the previous days’ radiation history and the variable radiation caused by vertical mixing. To examine this issue, we measured primary (PP) and bacterial (BP) production in samples from coastal water in the Northwest Mediterranean Sea incubated at fixed depths or moving vertically within the water column (0–8 m) with a periodicity of 22 min, exposed to full sun, PAR or maintained in dark. Three experiments were carried out on consecutive days to measure day-to-day variations in planktonic response. In surface waters, PP was inhibited by ~32 to 42% by UVR, and BP was inhibited by ~50 to 70% by solar radiation (UVR + PAR). We observed a general decrease in the integrated inhibition of PP due to UVR for both fixed and moving incubations over the 3 days from ~27% of inhibition to non-significant inhibition. In contrast, large discrepancies were observed in the integrated inhibition of BP due to solar radiation (UVR + PAR) between fixed and moving incubations. Whereas both type of incubations gave similar estimation of solar radiation inhibition on day 1 (~25%), inhibition became much higher for fixed incubation compared to moving incubation on days 2 and 3. Differences in responses between days suggest that light history, spectral quality, photoadaptation or acclimation may be important factors in daily observed responses. Our results also underline, for the first time, the importance of the vertical mixing in the BP inhibition by solar radiation.     

Extreme <Superscript>15</Superscript>N Depletion in Seagrasses

Seagrass beds form an important part of the coastal ecosystem in many parts of the world but are very sensitive to anthropogenic nutrient increases. In the last decades, stable isotopes have been used as tracers of anthropogenic nutrient sources and to distinguish these impacts from natural environmental change, as well as in the identification of food sources in isotopic food web reconstruction. Thus, it is important to establish the extent of natural variations on the stable isotope composition of seagrass, validating their ability to act as both tracers of nutrients and food sources. Around the world, depending on the seagrass species and ecosystem, values of seagrass N normally vary from 0 to 8?‰ δ¹⁵N. In this study, highly unusual seagrass N isotope values were observed on the east coast of Qatar, with significant spatial variation over a scale of a few metres, and with δ¹⁵N values ranging from +2.95 to ?12.39?‰ within a single bay during March 2012. This pattern of variation was consistent over a period of a year although there was a seasonal effect on the seagrass δ¹⁵N values. Seagrass, water column and sediment nutrient profiles were not correlated with seagrass δ¹⁵N values and neither were longer-term indicators of nutrient limitation such as seagrass biomass and height. Sediment δ¹⁵N values were correlated with Halodule uninervis δ¹⁵N values and this, together with the small spatial scale of variation, suggest that localised sediment processes may be responsible for the extreme isotopic values. Consistent differences in sediment to plant ¹⁵N discrimination between seagrass species also suggest that species-specific nutrient uptake mechanisms contribute to the observed δ¹⁵N values. This study reports some of the most extreme, negative δ¹⁵N values ever noted for seagrass (as low as ?12.4?‰) and some of the most highly spatially variable (values varied over 15.4?‰ in a relatively small area of only 655 ha). These results are widely relevant, as they demonstrate the need for adequate spatial and temporal sampling when working with N stable isotopes to identify food sources in food web studies or as tracers of anthropogenic nutrients.     

Origin of high field strength element enrichment in volcanic arcs: Geochemical evidence from the Sulu Arc, southern Philippines

Lavas from the Sulu Arc, southern Philippines, exhibit an enrichment in high field strength elements (HFSE) that represents a departure from the typical volcanic arc geochemical signature. It has been postulated that this relative enrichment arises from metasomatism of mantle wedge peridotites by melts derived from the subducting oceanic lithosphere, through formation of amphibole which subsequently breaks down and enriches the mantle source of parental arc magmas in HFSE. Divergent chemical and isotopic characteristics between Sulu Arc HFSE-enriched lavas and the Sulu Sea crust being subducted—the presumed source of slab-derived melts—render it unlikely, however, that HFSE enrichment arises from the influence of such melts. New geochemical data suggest that the varying degrees of HFSE enrichment in Sulu Arc lavas are instead the result of variable amounts of mixing between enriched and depleted mantle end-components—the sources of South China Sea intraplate lavas and Sulu seafloor basalts, respectively—within a compositionally heterogeneous mantle wedge.     

Rift structure, evolution, and earthquakes in the Gulf of Corinth, from reflection seismic images

Continental extension is forming the Gulf of Corinth across the strike of earlier Alpine evolution. Here, we present the first deep reflection sections with pre-stack depth-migration processing across the deep basin of the Corinth active rift, which image structures unpredicted by current models. Resolving the infill as a pile of layers that are broken by faults allows one to follow their subsidence and deformation history. Variation among the profiles suggests that southern normal faults control the rift in a time progression from the east towards its western tip. On the central, Derveni-Itea transect, a 3-km widening of the basin accrued since the initiation of this control that is marked by an unconformity between the two main sedimentary units. This is estimated to have occurred 0.5-0.6 Myr ago, assuming the glacio-eustatic sea-level changes have controlled the stratigraphy of sediments deposited as a succession of layers on the subsiding hangingwall, as they did on the southern footwall in forming the famous flight of marine terraces of Corinth. A roll-over anticline and crestal collapse graben are diagnostic of the control by a normal fault of dip varying with depth. The deeper low-angle part of this bi-planar fault is indeed imaged as a reflector in the basement. The occurrence of the collapse with a breakaway at the steep southern basin-bounding fault of the hangingwall slab can be estimated 0.12-0.2 Myr ago, with a marked increase in extension rate that brought it to its present fastest value over 10 mm/yr. The low-angle part of the active fault might also have controlled earlier evolution upslope and in the basin. When compared with inferences from earthquake studies, this low-angle active fault may not appear to be seismogenic but may participate to the seismic cycle, possibly in a conditionally stable regime. Active faults seen as sea-bottom scarps merely accommodate deformation of its subsiding hangingwall. The footwall of the low-angle faults, which current seismicity shows to be in extension, appears then as being pulled out from beneath the rift, in a motion towards the rolling-back slab that causes the Hellenic subduction retreat.     

Ubiquitination and carbonylation as markers of oxidative-stress in Ruditapes decussatus.

Environmental pollutants, such as metals, are widespread in aquatic environments and can lead to the formation of reactive oxygen species (ROS). ROS are highly toxic in marine species since they can cause serious reversible and irreversible changes in proteins including ubiquitination and modifications such as carbonylation. This study aimed to confirm the potential of ubiquitination and carbonylation as markers of oxidative stress in the clam Ruditapes decussatus (Veneroida, Veneridae) exposed to cadmium (40 microg/L). After 21 days of exposure clams were dissected into gills and digestive gland. Cytosolic proteins of both tissues were separated by two-dimensional electrophoresis (2-D SDS-PAGE) and analysed by immunobloting. Higher ubiquitination and carbonylation levels were in digestive gland of contaminated organisms. These results confirm the potential of ubiquitination and carbonylation as a sensitive and specific marker of oxidative stress in marine bivalves. In this approach, changes in protein structure provide options for affinity selection of sub-proteomes for 2D SDS-PAGE, simplifying the detection of protein biomarkers using proteomic approach.     

Ecology and functional roles of biological soil crusts in semi-arid ecosystems of Spain

Biological soil crusts (BSCs), composed of lichens, cyanobacteria, mosses, liverworts and microorganisms, are key biotic components of arid and semi-arid ecosystems worldwide. Despite they are widespread in Spain, these organisms have been historically understudied in this country. This trend is beginning to change as a recent wave of research has been identifying BSCs as a model ecological system. Many studies and research projects carried out in Spain have explored the role of BSCs on water, carbon and nitrogen fluxes, the interactions between BSCs and vascular plants, their dynamics after disturbances, and their response to global change, among other topics. In this article we review the growing body of research on BSCs available from semi-arid areas of Spain, highlighting its importance for increasing our knowledge on this group of organisms. We also discuss how it is breaking new ground in emerging research areas on the ecology of BSCs, and how it can be use to guide management and restoration efforts. Finally, we provide directions for future research on the ecology of BSCs in Spain and abroad.     

A preliminary methods comparison for measurement of dissolved organic nitrogen in seawater

Routine determination of dissolved organic nitrogen (DON) is performed in numerous laboratories around the world using one of three families of methods: UV oxidation (UV), persulfate oxidation (PO), or high temperature combustion (HTC). Essentially all routine methods measure total dissolved nitrogen (TDN) and calculate DON by subtracting the dissolved inorganic nitrogen (DIN). While there is currently no strong suggestion that any of these methods is inadequate, there are continuing suspicions of slight inaccuracy by UV methods.This is a report of a broad community methods comparison where 29 sets (7 UV, 13 PO, and 9 HTC) of TDN analyses were performed on five samples with varying TDN and DIN concentrations. Analyses were done in a “blind” procedure with results sent to the first author. With editing out one set of extreme outliers (representing 5 out of 145 ampoules analyzed), the community comparability for analyzing the TDN samples was in the 8–28% range (coefficient of variation representing one standard deviation for the five individual samples by 28 analyses). When DIN concentrations were subtracted uniformly (single DIN value for each sample), the comparability was obviously worse (19–46% cv). This comparison represents a larger and more diverse set of analyses, but the overall comparability is only marginally better than that of the Seattle workshop of a decade ago. Grouping methods, little difference was seen other than inconclusive evidence that the UV methods gave TDN values for several of the samples higher than HTC methods. Since there was much scatter for each of the groups of methods and for all analyses when grouped, it is thought that more uniformity in procedures is probably needed. An important unplanned observation is that variability in DIN analyses (used in determining the final analyte in most UV and PO methods) is essentially as large as the variability in the TDN analyses.This exercise should not be viewed as a qualification exercise for the analysts, but should instead be considered a broad preliminary test of the comparison of the families of methods being used in various laboratories around the world. Based on many independent analyses here, none of the routinely used methods appears to be grossly inaccurate, thus, most routine TDN analyses being reported in the literature are apparently accurate. However, it is not reassuring that the ability of the international community to determine DON in deep oceanic waters continues to be poor. It is suggested that as an outgrowth of this paper, analysts using UV and PO methods experiment and look more carefully at the completeness of DIN conversion to the final analyte and also at the accuracy of their analysis of the final analyte. HTC methods appear to be relatively easy and convenient and have potential for routine adoption. Several of the authors of this paper are currently working together on an interlaboratory comparison on HTC methodology.