The molecular universe

Helen J Fraser , Martin R S McCoustra and David A Williams present a simple guide to astrochemistry.
Molecules play a fundamental role in many regions of our universe. The science where chemistry and astronomy overlap is known as astrochemistry, a branch of astronomy that has risen in importance over recent years. In this article we review the significance of chemistry in several astronomical years. IN this article we review the significance of chemistry in several astronomical environments including the early universe, interstellar clouds, starforming regions and protoplanetary disks. We discuss theoretical models, laboratory experiments and observational data, and present several recent and exciting results that challenge our perception of the "molecular universe".     

cDNA cloning and expression of a cytochrome P450 1A (CYP1A) gene from the hermaphroditic fish Rivulus marmoratus

We previously described the genomic structure of the cytochrome P450 1A (CYP1A) gene from the hermaphroditic fish Rivulus marmoratus [Kim, I.-C., Kim, Y.J., Yoon, Y.-D, Kawamura, S., Lee, Y.-S., Lee, J.-S., 2004a. Cloning of cytochrome P450 1A (CYP1A) genes from the hermaphroditic fish Rivulus marmoratus and the Japanese medaka Oryzias latipes. Mar. Environ. Res. 58, 125–129]. To further characterize R. marmoratus CYP1A, we cloned the cDNA sequence of a CYP1A gene from this species and also expressed its recombinant protein in an E. coli system. We exposed R. marmoratus to 4-nonylphenol, and found a small induction of CYP1A mRNA in the treated animals. In this paper, we discuss the characteristics of R. marmoratus CYP1A gene as well as its potential use in a biomonitoring assay.     

Why the Sacramento Delta area differs from other parts of the great valley: Numerical modeling of thermal structure and thermal subsidence of forearc basins

Data on present-day heat flow, subsidence history, and paleotemperature for the Sacramento Delta region, California, have been employed to constrain a numerical model of tectonic subsidence and thermal evolution of forearc basins. The model assumes an oceanic basement with an initial thermal profile dependent on its age subjected to refrigeration caused by a subducting slab. Subsidence in the Sacramento Delta region appears to be close to that expected for a forearc basin underlain by normal oceanic lithosphere of age 150 Ma, demonstrating that effects from both the initial thermal profile and the subduction process are necessary and sufficient. Subsidence at the eastern and northern borders of the Sacramento Valley is considerably less, approximating subsidence expected from the dynamics of the subduction zone alone. These results, together with other geophysical data, show that Sacramento Delta lithosphere, being thinner and having undergone deeper subsidence, must differ from lithosphere of the transitional type under other parts of the Sacramento Valley. Thermal modeling allows evaluation of the rheological properties of the lithosphere. Strength diagrams based on our thermal model show that, even under relatively slow deformation (10⁻¹⁷ s⁻¹), the upper part of the delta crystalline crust (down to 20–22 km) can fail in brittle fashion, which is in agreement with deeper earthquake occurrence. Hypocentral depths of earthquakes under the Sacramento Delta region extend to nearly 20 km, whereas, in the Coast Ranges to the west, depths are typically less than 12–15 km. The greater width of the seismogenic zone in this area raises the possibility that, for fault segments of comparable length, earthquakes of somewhat greater magnitude might occur than in the Coast Ranges to the west. The text was submitted by the authors in English.     

Comparison of flood hazard assessments on desert piedmonts and playas: A case study in Ivanpah Valley, Nevada

Accurate and realistic characterizations of flood hazards on desert piedmonts and playas are increasingly important given the rapid urbanization of arid regions. Flood behavior in arid fluvial systems differs greatly from that of the perennial rivers upon which most conventional flood hazard assessment methods are based. Additionally, hazard assessments may vary widely between studies or even contradict other maps. This study's chief objective was to compare and evaluate landscape interpretation and hazard assessment between types of maps depicting assessments of flood risk in Ivanpah Valley, NV, as a case study. As a secondary goal, we explain likely causes of discrepancy between data sets to ameliorate confusion for map users. Four maps, including three different flood hazard assessments of Ivanpah Valley, NV, were compared: (i) a regulatory map prepared by FEMA, (ii) a soil survey map prepared by NRCS, (iii) a surficial geologic map, and (iv) a flood hazard map derived from the surficial geologic map, both of which were prepared by NBMG. GIS comparisons revealed that only 3.4% (33.9 km²) of Ivanpah Valley was found to lie within a FEMA floodplain, while the geologic flood hazard map indicated that ~ 44% of Ivanpah Valley runs some risk of flooding (Fig. 2D). Due to differences in mapping methodology and scale, NRCS data could not be quantitatively compared, and other comparisons were complicated by differences in flood hazard class criteria and terminology between maps. Owing to its scale and scope of attribute data, the surficial geologic map provides the most useful information on flood hazards for land-use planning. This research has implications for future soil geomorphic mapping and flood risk mitigation on desert piedmonts and playas. The Ivanpah Valley study area also includes the location of a planned new international airport, thus this study has immediate implications for urban development and land-use planning near Las Vegas, NV.     

River stabilisation due to changing climate and vegetation during the late Quaternary in western Tasmania, Australia

The Stanley River in western Tasmania, Australia, contains sub-fossil rainforest logs within the channel and floodplain. Of the more than 85 radiocarbon dates obtained, all but 3 date from 17 ka to the present and permit an interpretation of fluvial and related environmental changes over this period. Particular attention is focused on the interactive relationship between the river and its riparian rainforest. Following the Last Glacial Maximum, the Stanley River was a laterally active gravel-load system reworking most of its valley floor in the upstream reaches. With ameliorating conditions at the end of the Pleistocene, climate became less seasonal and flow regimes less energetic. Huon pines already present in the catchment, re-asserted themselves in the form of dense tree cover along the river banks and floodplains with basal floodplain deposition shifting from gravels to coarse sands and granules. By about 3.5 ka, a further change in climate reduced stream discharges substantially. As a result the channel reduced in size, transported finer sediment, became laterally stable, and the floodplain accreted with overbank deposits of sand and silt. Huon pines falling into the channel formed obstructions of woody debris, some surviving for 2 ka. These have reduced stream power and boundary shear stress, further contributing to channel stability. Generational sequences of Huon pines on the river banks, some extending back 1–2 ka, are additional evidence of this stability. Since the Pleistocene, changing climate and the re-establishment of dense riparian rainforest appear to have stabilised the river channels and floodplains of western Tasmania.     

Finding work in 2001: urban–rural contrasts across England in employment rates and local job availability

Early results from the 2001 census of England allow a preliminary analysis of joblessness. People in the prime working ages (25–49) are more likely to be in work than those in their 50s, but the differences are quite subtle: in particular, men without qualifications are not much more likely to be in work when they are younger, despite the suggestions that too many men cease working in their 50s. The evidence supports the view that there is a national shortfall of demand for labour, that the low-skilled are the least able to compete for scarce jobs, and older people are the most likely to be unqualified. Moreover there is a strong spatial clustering of areas where job availability has declined or grown least, undermining the government's claim that there were often available jobs near to concentrations of people without work.     

Unique isoprene oxidation products demonstrate chlorine atom chemistry occurs in the Houston,Texas urban area

As part of the 2000 Texas Air Quality Study (TexAQS), we studied the isoprene oxidation process under ambient conditions to discern the presence of chlorine atom (Cl) chemistry in the Houston, Texas urban area. By measuring chloromethylbutenone (CMBO) and an isomer of chloromethylbutenal (CMBA), we clearly observed sixteen episodes of active Cl chemistry during the 24-day experiment. Estimated median Cl concentration during each of these episodes was between the detection limit of ~10² atoms cm⁻³ and 50 _{- 30} ^{+ 70} ×10⁴ 50_{ - 30}^{ + 70} \times {10^4} atoms cm⁻³. Cl concentration during all the episodes averaged 7.6 _{- 2.0} ^{+ 4.7} ×10⁴ 7.6_{ - 2.0}^{ + 4.7} \times {10^4} atoms cm⁻³ and thus amounted to less than 3% of the OH concentration during the same periods. During the episodes, the fraction of oxidation chemistry initiated by Cl ranged from 3–43% and was strongly dependent on the quantity and type of hydrocarbons present in the atmosphere. Because of its intermittent presence and low concentration, Cl is not a broadly influential oxidant in the Houston, Texas urban area.     

Estimating australian forest fire danger under conditions of doubled carbon dioxide concentrations

The most appropriate indices with which to quantify Australian bushfire danger are the McArthur fire danger meters. These meters use meteorological information to produce a fire danger index that is directly related to the chance of a fire starting - and to the severity of a fire once it has started. The Mark 5 forest-fire danger meter uses air temperature, relative humidity and wind speed, plus a drought factor that is calculated using daily rainfall and temperature information.Three years of daily data generated from the CSIRO four-level general circulation model, and thirty years of daily data generated from the CSIRO nine-level model were used to estimate the daily McArthur forest fire danger index for simulations corresponding to present conditions, and to those corresponding to doubled atmospheric CO₂. The performance of these models with respect to fire danger was tested by comparing the fire danger index for Sale (in the Eastern part of Victoria, South-eastern Australia) calculated from analysis of daily climatological data with the modelled annual cumulative forest fire danger index for the grid point that was representative of Sale. Data from both models for all Australian grid points were also examined. Both models predict an increase in fire danger over much of Australia for their doubled CO₂ scenarios.The results from the models confirm that annually averaged daily relative humidity is the single most important variable in the estimation of forest fire danger on an annual basis, yet the models tend to produce relative humidities that are slightly too low so that the fire danger is overestimated. A simple one-box model of evaporation indicates that the value of relative humidity to be expected under an altered climatic regime depends on the modelled relation between actual and potential evaporation, the present values of relative humidity and evaporation rate, as well as on the expected changes in wind speed.