Roles of Biogeochemical Processes in the Oceanic Carbon Cycle Described with a Simple Coupled Physical-Biogeochemical Model

To evaluate the contribution of biogeochemical processes to the oceanic carbon cycle and to calculate the ratio of calcium carbonate to organic carbon downward export, we have incorporated biological and alkalinity pumps in the yoked high-latitude exchange/interior diffusion-advection (YOLDA) model. The biogeochemical processes are represented by four parameters. The values of the parameters are tuned so that the model can reproduce the observed phosphate and alkalinity distributions in each oceanic region. The sensitivity of the model to the biogeochemical parameters shows that biological production rates in the euphotic zone and decomposition depths of particulate matters significantly influence horizontal and vertical distributions of biogeochemical substances. The modeled vertical fluxes of particulate organic phosphorus and calcium carbonate are converted to vertical carbon fluxes by the biological pump and the alkalinity pump, respectively. The downward carbon flux from the surface layer to the deep layer in the entire region is estimated to be 3.36 PgC/yr, which consists of 2.93 PgC/yr from the biological pump and 0.43 PgC/yr from the alkalinity pump, which is consistent with previous studies. The modeled rain ratio is higher with depth and higher in the Pacific and Indian Oceans than in the Atlantic Ocean. The global rain ratio at the surface layer is calculated to be 0.14 to 0.15. This value lies between the lower and higher ends of the previous estimates, which range widely from 0.05 to 0.25. This study indicates that the rain ratio is unlikely to be higher than 0.15, at least in the surface waters.     

Evidence of the restricted gene flow within a small spatial scale in the Japanese common intertidal goby Chaenogobius annularis

Elucidating the scale of gene flow among populations is an important challenge for understanding the ecological dynamics and local adaptation of marine organisms. We assessed whether gene flow is restricted even at a small spatial scale in the Japanese common intertidal goby Chaenogobius annularis, using highly polymorphic DNA markers, involving the mitochondrial DNA (mtDNA) control region and 15 microsatellite DNA (msDNA), because past ecological studies have suggested low dispersal ability for rocky intertidal fishes. We found significant heterogeneities between four neighboring local populations by both mtDNA and msDNA analyses. In addition, no genetic heterogeneity was detected by either method across generations within a population; it was considered that such genetic differentiation is retained across generations and that the gene flow of this species is restricted to within a radius of a few kilometers. This is the first report showing a clear genetic subdivision in rocky intertidal fish.     

A three-dimensional ocean general circulation model for mesoscale eddies——Ⅱ Diagnostic analysis

A three-dimensional density field associated with mesoscaie unstable waves generated by the 3-D, primitive-equation model (Wang and Ikeda, 1996) is provided to the quasi-geostrophic pressure tendency and ω-equations, and to the (ageostrophic) Q-vector equation. Diagnostic analyses, analogous to the approaches in meteorology: ω-equation and Q-vector method, are for the first time developed to examine the mesoscaie dynamical processes and mechanisms of the unstable waves propagating in the mid-latitude ocean. The weaknesses and strengths of these two diagnostic approaches are evaluated and compared to the model results. The Q-vector method is then recommended to diagnose the vertical motion associated with the mesoscaie dynamics from a hydrographic CTD (conductivity-temperature-depth) array, while the quasi-geostrophic equations produce some small-scale features (errors) in the diagnosed fields.     

Predictability of Interannual Variability in the Kuroshio Transport South of Japan Based on Wind Stress Data over the North Pacific

It is expected that a roughly two-year forecast of the Kuroshio transport variation can be made from a past record of wind stress data over the ocean, since it takes nearly ten years for the first-mode baroclinic Rossby wave to traverse the entire basin in the midlatitude North Pacific (∼30°N). We therefore investigated the predictability using an ocean general circulation model driven by the wind stress data from the National Centers for Environmental Prediction/National Center for Atmospheric Research (NCEP/NCAR) reanalysis. Referring to a hindcast experiment as the control run, we carried out fifteen forecast experiments, the initial conditions of which are taken from the hindcast experiment at intervals of two years during the period from the end of 1969 to the end of 1997. Each of the forecast experiments is driven only by wind stress in the year preceding each experiment. The forecasted Kuroshio transport anomaly south of Japan agrees better with the hindcasted one during the first two years of the forecast in most cases. In some cases, however, significant disagreements occur, most of which are likely due to larger unpredictable variations caused by wind stress anomalies near Japan. At the end of forecast year 2, the anomaly correlation coefficient is about 0.7, and rms of the forecast error is smaller than rms of the hindcasted anomaly. These results indicate that the prediction of the interannual variability in the Kuroshio transport could be made two years in advance at a statistically significant level. This revised version was published online in July 2006 with corrections to the Cover Date.     

Assimilated carbon budget for the hyperiid amphipodThemisto japonica (bovallius) from the Japan sea as influenced by temperature

Using a growth model based on moult number, the assimilated carbon budget was constructed forThemisto japonica growing from the specimens just released from the marsupium to mature adults at 1–15°C. As budget parameters, growth (G), metabolism (Me), moult (Mo), and reproduction (Re) were measured and assimilation (A) was estimated as the sum of these four parameters (A=G+Me +Mo +Re). The results of the lifetime budget indicated that among these parameters the greatest allocation ofA was toMe (70–83%). Lifetime expenditure of carbon forMe was the least at 7°C, andMe increased with either increase or decrease of the temperature from 7°C. A female grown to full adult size at 7°C invested 16.6 % forG, 70.2% forMe, 2.1% forMo, and 11.1% forRe of totalA. General features seen in the partition ofA toG, Me, Mo, andRe forT. japonica are similar to those of other planktonic crustaceans being reported. Considering the profound effect of temperature on the assimilated carbon budget, practical problems in defining the representative habitat temperature for diel vertical migrators likeT. japonica in the field are discussed.     

Structure, biomass distribution and trophodynamics of the pelagic ecosystem in the Oyashio region, western subarctic Pacific

Biomass distribution and trophodynamics in the oceanic ecosystem in the Oyashio region are presented and analyzed, combining the seasonal data for plankton and micronekton collected at Site H since 1996 with data for nekton and other animals at higher trophic levels from various sources. The total biomass of biological components including bacteria, phytoplankton, microzooplankton, mesozooplankton, micronekton, fishes/squids and marine birds/mammals was 23 g C m⁻², among which the most dominant component was mesozooplankton (34% of the total), followed by phytoplankton (28%), bacteria (15%) and microzooplankton (protozoans) (14%). The remainder (9%) was largely composed of micronekton and fish/squid. Marine mammals/birds are only a small fraction (0.14%) of the total biomass. Large/medium grazing copepods (Neocalaus spp., Eucalanus bungii and Metridia spp.) accounted for 77% of the mesozooplankton biomass. Based on information about diet composition, predators were assigned broadly into mean trophic level 3–4, and carbon flow through the grazing food chain was established based on the estimated annual production/food consumption balance of each trophic level. From the food chain scheme, ecological efficiencies as high as 24% were calculated for the primary/secondary production and 21% for the secondary/tertiary production. Biomass and production of bacteria were estimated as 1/10 of the respective values for phytoplankton at Site H, but the role of the microbial food chain remains unresolved in the present analysis. As keystone species in the oceanic Oyashio region, Neocalanus spp. are suggested as a vital link between primary production and production of pelagic fishes, mammals and birds.     

Importance of intracellular Fe pools on growth of marine diatoms by using unialgal cultures and on the Oyashio region phytoplankton community during spring

We report on the ability for luxury Fe uptake and the potential for growth utilizing intracellular Fe pools for 4 coastal centric diatom isolates and in situ phytoplankton assemblages, mainly composed of diatoms. Iron uptake of the diatom isolates and natural phytoplankton assemblages in the Oyashio region during spring blooms were prevented by adding hydroxamate siderophore desferrioxamine B (DFB). After the addition of DFB, intracellular Fe in the diatom isolates supported 2.4–4.2 cell divisions with 1.2–2.6 Chl a doublings. The intracellular Fe was primarily used for cell generation rather than Chl a production, leading to a reduction in the Chl a cell quota in the Fe-starved cells with time. The metabolic properties of the Fe-starved cells with their cell morphologies were different among species or genera. An on-deck incubation experiment also exhibited 1.9 cell divisions and 0.81 Chl a doublings of phytoplankton after the addition of DFB, also indicating the preference of cell generation over Chl a production. A decrease in the level of cellular Chl a, a main light-harvesting pigment in Fe-starved diatoms, may become a superior survival strategy to protect the cells from high irradiance that can cause photo-oxidative damages through photosynthesis. Such relatively low-Fe with high-light conditions could often occur in surface waters of the Oyashio region from spring to summer.     

Instability processes of mesoscale features in the Kuroshio Extension reproduced through assimilation of altimeter data into a quasi-geostrophic model using the variational method

The Kuroshio, one of the most energetic western boundary currents in the world, shows variations in its mesoscale features and recirculation gyres, providing an excellent test case of interactions between the mesoscale field and Kuroshio Extension (KE) states. A three-layer quasi-geostrophic model was used to reconstruct flow fields continuous in time and the horizontal plane from the TOPEX/POSEIDON altimeter data based on the variational method. Compared with the solutions obtained by the nudging method, the present results proved that the variational solution was closer to the real field. In the assimilation period, 1993–1997, the baroclinic instability index (BII) was defined to be the phase shift from the uppermost layer to the lowest layer with mesoscale features. In the first half of the assimilation period, the KE took the transition from the elongated to contracted states, in which BII decreased gradually, as a consequence of the KE state shift. In the second half period, BII increased in the downstream region just west of the Shatsky Rise, in which baroclinic instability contributed to the final stage of the contracted state, and was followed by rapidly weakened instability as a trigger of the opposite transition from the contracted to elongated states. The wind-driven recirculation gyre played an active role on the KE transition in the first half period, although not in the second half.     

Geometry of the Nojima Fault at Nojima-Hirabayashi, Japan – II. Microstructures and their Implications for Permeability and Strength

Samples of damage-zone granodiorite and fault core from two drillholes into the active, strike-slip Nojima fault zone display microstructures and alteration features that explain their measured present-day strengths and permeabilities and provide insight on the evolution of these properties in the fault zone. The least deformed damage-zone rocks contain two sets of nearly perpendicular (60–90° angles), roughly vertical fractures that are concentrated in quartz-rich areas, with one set typically dominating over the other. With increasing intensity of deformation, which corresponds generally to increasing proximity to the core, zones of heavily fragmented rock, termed microbreccia zones, develop between prominent fractures of both sets. Granodiorite adjoining intersecting microbreccia zones in the active fault strands has been repeatedly fractured and locally brecciated, accompanied by the generation of millimeter-scale voids that are partly filled with secondary minerals. Minor shear bands overprint some of the heavily deformed areas, and small-scale shear zones form from the pairing of closely spaced shear bands. Strength and permeability measurements were made on core collected from the fault within a year after a major (Kobe) earthquake. Measured strengths of the samples decrease regularly with increasing fracturing and fragmentation, such that the gouge of the fault core and completely brecciated samples from the damage zone are the weakest. Permeability increases with increasing disruption, generally reaching a peak in heavily fractured but still more or less cohesive rock at the scale of the laboratory samples. Complete loss of cohesion, as in the gouge or the interiors of large microbreccia zones, is accompanied by a reduction of permeability by 1-2 orders of magnitude below the peak values. The core samples show abundant evidence of hydrothermal alteration and mineral precipitation. Permeability is thus expected to decrease and strength to increase somewhat in active fault strands between earthquakes, as mineral deposits progressively seal fractures and fill pore spaces.