Effects of riparian manipulation on stream communities in small streams: Two case studies

The effects of riparian manipulation in New Zealand are described for two case studies, one a short‐term study of the effects of the removal of riparian vegetation on fish, and the second, a long‐term study of the effect of re‐establishment of riparian vegetation on fish and benthic macro invertebrates. The first case study was an experiment carried out between November 2001 and May 2002. Overhanging bank vegetation and in‐stream wood were removed from short reaches of a small pastoral stream that had intact riparian margins, resulting in a change in stream structure with the formation of shallow uniform runs rather than pool and riffle structures as in unmodified reaches. The removal of bank cover and consequential instream habitat changes reduced inanga (Galaxias maculatus) densities by a factor of four within months of vegetation removal, showing the importance of instream cover and habitat to inanga. Adult longfin eel (Anguilla dieffenbachii) also became less abundant in the cleared reaches, but elvers (Anguilla spp.) became more abundant. In the second case study, pastoral sections in two small streams draining from native forest catchments were restored in 1995/96 by planting riparian vegetation and preventing stock access. After 10 years, the restoration efforts had more than doubled the numbers of giant kokopu (G. argenteus) and redfin bullies (Gobiomorphus huttoni), slightly increased numbers of banded kokopu (G. fasciatus), and decreased shortfin eel (A. australis) numbers by about 40%. The macroinvertebrate communities changed so that they became more similar to those at upstream native forest reference sites. These two case studies show that riparian margins can influence the composition of the fish and macroinvertebrate communities in small streams through the effects on cover, instream habitat and probably water temperature. Riparian restoration was most effective for the fish species that use cover and pool habitat.     

Reduced abundance of banded kokopu (Galaxias fasciatus) and other native fish in turbid rivers of the North Island of New Zealand

Laboratory experiments demonstrated that migrant juvenile banded kokopu (Galaxias fasciatus Gray) were more sensitive to suspended sediment (SS) than other native fish species. If juvenile migrants avoid waters made turbid by SS and their recruitment to adult habitats up stream is reduced, then adult abundance may decline in turbid rivers. To test this, we compared the abundance of diadromous native fish between turbid and clear rivers. The duration (% time) for which SS concentrations exceeded 120 mg litre^‐1 (a critical level from laboratory experiments) during the migration season (August‐December) was estimated for over 150 New Zealand river sites. Turbid rivers were defined as those where SS concentrations exceeded 120 mg litre^‐1 for over 20% of the time and clear rivers as those where SS concentrations exceeded 120 mg litre^‐1 for less than 10% of the time. Eight turbid rivers and seven clear ones were identified where sufficient data on SS and native fish populations existed to permit a comparison. The mean occurrence of banded kokopu was reduced by 89.5% in turbid rivers and, although other diadromous fish species were also less common, banded kokopu was most affected. Densities of adult banded kokopu were also significantly lower in optimal stream habitats in three turbid compared with three matched clear rivers. We therefore concluded that the abundance of adult banded kokopu was reduced in turbid rivers and propose that this is because of reduced recruitment of juveniles in turbid rivers.     

Numerical simulations of granular dynamics: I. Hard-sphere discrete element method and tests

We present a new particle-based (discrete element) numerical method for the simulation of granular dynamics, with application to motions of particles on small solar system body and planetary surfaces. The method employs the parallel N-body tree code pkdgrav to search for collisions and compute particle trajectories. Collisions are treated as instantaneous point-contact events between rigid spheres. Particle confinement is achieved by combining arbitrary combinations of four provided wall primitives, namely infinite plane, finite disk, infinite cylinder, and finite cylinder, and degenerate cases of these. Various wall movements, including translation, oscillation, and rotation, are supported. We provide full derivations of collision prediction and resolution equations for all geometries and motions. Several tests of the method are described, including a model granular “atmosphere” that achieves correct energy equipartition, and a series of tumbler simulations that show the expected transition from tumbling to centrifuging as a function of rotation rate.     

A numerical model of cohesion in planetary rings

We present a numerical method that incorporates particle sticking in simulations using the N-body code pkdgrav to study motions in a local rotating frame, such as a patch of a planetary ring. Particles stick to form non-deformable but breakable aggregates that obey the (Eulerian) equations of rigid-body motion. Applications include local simulations of planetary ring dynamics and planet formation, which typically feature hundreds of thousands or more colliding bodies. Bonding and breaking thresholds are tunable parameters that can approximately mimic, for example, van der Waals forces or interlocking of surface frost layers. The bonding and breaking model does not incorporate a rigorous treatment of internal fracture; rather the method serves as motivation for first-order investigation of how semi-rigid bonding affects the evolution of particle assemblies in high-density environments.We apply the method to Saturn’s A ring, for which laboratory experiments suggest that interpenetration of thin, frost-coated surface layers may lead to weak cohesive bonding. These experiments show that frost-coated icy bodies can bond at the low impact speeds characteristic of the rings. Our investigation is further motivated by recent simulations that suggest a very low coefficient of restitution is needed to explain the amplitude of the azimuthal brightness asymmetry in Saturn’s A ring, and the hypothesis that fine structure in Saturn’s B ring may in part be caused by large-scale cohesion.This work presents the full implementation of our model in pkdgrav, as well as results from initial tests with a limited set of parameters explored. We find a combination of parameters that yields aggregate size distribution and maximum radius values in agreement with Voyager data for ring particles in Saturn’s outer A ring. We also find that the bonding and breaking parameters define two strength regimes in which fragmentation is dominated either by collisions or other stresses, such as tides. We conclude our study with a discussion of future applications of and refinements to our model.     

Asia-Pacific mussel watch: monitoring contamination of persistent organochlorine compounds in coastal waters of Asian countries

Contamination of persistent organochlorines (OCs) such as PCBs (polychlorinated biphenyls), DDT and its metabolites (DDTs), HCH (hexachlorocyclohexane) isomers (HCHs), chlordane compounds (CHLs), and HCB (hexachlorobenzene) were examined in mussels collected from coastal waters of Asian countries such as Cambodia, China, Hong Kong, India, Indonesia, Japan, Korea, Malaysia, Philippines, Far East Russia, Singapore, and Vietnam in 1994, 1997, 1998, 1999, and 2001 to elucidate the contamination status, distribution and possible pollution sources and to assess the risks on aquatic organisms and human. OCs were detected in all mussels collected from all the sampling sites investigated. Considerable residue levels of p,p(')-DDT and alpha-HCH were found in mussels and the concentrations of DDTs and HCHs found in mussels from Asian developing countries were higher than those in developed nations suggesting present usage of DDTs and HCHs along the coastal waters of Asian developing countries. On the other hand, lower concentrations of PCBs detected in mussels from Asian developing countries than those in developed countries indicate that PCBs contamination in mussels is strongly related to industrial and activities. To our knowledge, this is a first comprehensive report on monitoring OCs pollution in the Asia-Pacific region.     

Relationships between tissue concentrations of chlorinated hydrocarbons (polychlorinated biphenyls and chlorinated pesticides) and antioxidative responses of marine mussels,Perna viridis

Marine mussels, Perna viridis, were transplanted from a reference site to various polluted sites around Hong Kong. After 30 d of exposure, antioxidative responses in the gills and hepatopancreas and tissue concentrations of chlorinated hydrocarbons [polychlorinated biphenyls (PCBs) and chlorinated pesticides (CPs)] were determined for individual mussels. Glutathione S transferase (GST) and glutathione (GSH) were positively correlated with tissue PCB concentrations. Only one of the enzymatic antioxidants, glutathione peroxidase (GPx), showed significant response to tissue PCB. No significant correlation was found between tissue concentrations of chlorinated hydrocarbons and other enzymatic antioxidants (superoxide dismutase (SOD), catalase (CAT), glutathione reductase (GR) and NADPH DT-diaphorase (DT-d). Oxidative stress, measured as thiobarbituric acid reactive substances, was correlated with chlorinated pesticide concentrations in tissues. This study demonstrated a correlation between GST/GSH and chlorinated hydrocarbons. The apparent lack of correlation between trace organic pollutants and some of the enzymatic antioxidants may be due to the inhibitory effects caused by these chemicals. The above results suggest that more investigations are needed before these enzymes can be used as biomarkers.     

Brackish water faunas from the St Maughans Formation: The Old Red Sandstone section at Ammons Hill,Hereford and Worcester,UK, re-examined

The disused railway cutting at Ammons Hill, Hereford and Worcester, exposes a sequence of beds belonging to the Devonian St Maughans Formation of Lochkovian (Gedinnian) age. The beds are of Old Red Sandstone facies, but contain brackish water faunas. These faunas occur at a level generally considered to be above the level of marine influence that affected the older Raglan Mudstone Formation of mainly Přídolí Series age. The section, described by King in 1934, is now overgrown, but was excavated in 1986 by the British Geological Survey during its survey of the Worcester 1:50000 sheet. The evidence of the section calls for slight amendment of Allen's (1985) model of an interrupted transition from marine deposition in Ludlow time to freshwater deposition in Gedinnian time that was complete by the time of the formation of a regionally extensive calcrete palaeosol, the Psammosteus Limestone. Subsequent transgressive events took place before the establishment of apparently wholly fluvial and floodplain environments.