Comparative phylogeography of African rain forest trees: A review of genetic signatures of vegetation history in the Guineo-Congolian region

The biogeographic history of the African rain forests has been contentious. Phylogeography, the study of the geographic distribution of genetic lineages within species, can highlight the signatures of historical events affecting the demography and distribution of species (i.e. population fragmentation or size changes, range expansion/contraction) and, thereby, the ecosystems they belong to. The accumulation of recent data for African rain forests now enables a first biogeographic synthesis for the region. In this review, we explain which phylogeographic patterns are expected under different scenarios of past demographic change, and we give an overview of the patterns detected in African rain forest trees to discuss whether they support alternative hypotheses regarding the history of the African rain forest cover. The major genetic discontinuities in the region support the role of refugia during climatic oscillations, though not necessarily following the classically proposed scenarios. We identify in particular a genetic split between the North and the South of the Lower Guinean region. Finally we provide some perspectives for future study.     

Seasonal changes in community composition and trophic structure of fish populations of five salt marshes along the Essex coastline, United Kingdom

European intertidal salt marshes are important nursery sites for juvenile fish and crustaceans. Due to the increasing threat of habitat loss, the seasonal changes of salt marsh fish communities need to be understood in order to appreciate the ecological and economic importance of the saltmarsh habitat. This study was the first in Great Britain to investigate the seasonal changes of salt marsh fish communities and the variation in community structure between closely located marsh habitats. Between February 2007 and March 2008, five marshes on three estuaries of the Essex coastline were sampled using flume nets to block off intertidal creeks at high tide. Fourteen fish species were caught. The community overall was dominated by three species that made up 91.6% of the total catch: the common goby Pomatoschistus microps (46.2% of the total catch), juvenile herring Clupea harengus (24.3%), and juvenile and larval sea bass Dicentrarchus labrax (21.2%). Cluster analysis demonstrated clear seasonal patterns, with some community structures unique to specific marshes or estuaries. The marsh fish community shifts from a highly diverse community during spring, to a community dominated by D. labrax and P. microps in autumn, and low diversity during winter months. Gravimetric stomach content analysis of fish community identified three main trophic guilds; macroinvertivores, planktivores and omnivores. The macroinvertivore feeding guild contained D. labrax and P. microps, the two most frequently occurring species. This investigation demonstrates the importance of British salt marshes as nursery habitats for commercial fish species.     

Elevated biomass of mesozooplankton and enhanced fecal pellet flux in cyclonic and mode-water eddies in the Sargasso Sea

Accumulating evidence points to the importance of mesoscale eddies in supplying nutrients to surface waters in oligotrophic gyres. However, the nature of the biological response and its evolution over time has yet to be elucidated. Changes in mesozooplankton community composition due to eddy perturbation also could affect biogeochemical cycling. Over the course of two summers we sampled seven eddies in the Sargasso Sea. We focused on and followed a post-phytoplankton bloom cyclonic eddy (C1) in 2004 and a blooming mode-water anticyclonic eddy (A4) in 2005. We collected zooplankton in all eddies using a Multiple Opening and Closing Net Environmental Sampling System (MOCNESS) and quantified biomass (>0.15 mm, in five size fractions) from 0 to 700 m over nine discrete depth intervals. Zooplankton biomass (>0.5 mm) in the upper 150 m was similarly enhanced at night for the periphery of C1 and the center of A4 at 0.514 g m⁻² and 0.533 g m⁻², respectively, compared to outside (0.183 g m⁻² outside C1 and 0.197 g m⁻² outside A4). Despite minimal chlorophyll a enhancement and dominance by picoplankton in C1, zooplankton biomass increased most for the largest size class (>5 mm). Gut fluorescence for euphausiids and large copepods was also elevated on the C1 periphery. In A4, peak biomass occurred at eddy center coincident with peak primary production, but was highly variable (changing by >3-fold) over time, perhaps resulting from the dense, but patchy distribution of diatom chains in this region. Shifts in zooplankton community composition and abundance were reflected in enhancement of fecal pellet production and active transport by diel vertical migration in eddies. Inside C1 the flux of zooplankton fecal pellets at 150 m in June 2004 was 1.5-fold higher than outside the eddy, accounting for 9% of total particulate organic carbon (POC) flux. The flux of fecal pellets (mostly from copepods) increased through the summer in eddy A4, matching concurrent increases in zooplankton <2 mm in length, and accounting for up to 12% of total POC flux. Active carbon transport by vertically migrating zooplankton was 37% higher on the periphery of C1 and 74% higher at the center of A4 compared to the summer mean at the Bermuda Atlantic Time-series Study (BATS) station. Despite contrasting responses by the phytoplankton community to cyclonic and mode-water eddies, mesozooplankton biomass was similarly enhanced, possibly due to differential physical and biological aggregation mechanisms, and resulted in important zooplankton-mediated changes in mesoscale biogeochemistry.     

Application of participatory principles to investigation of the natural world: An example from Chile

Participatory research in environmental and natural resources-related fields is premised on many of the same notions that underlie participatory processes in decision making. This study examines one instance of participatory research to assess the extent to which the documented benefits of participatory decision-making hold up in the context of research. A survey of Chilean shell-fishers engaged in research with marine biologists assesses the relationships between four variables: fishers’ participation in research, fishers’ opinions of biologists, fishers’ trust in biologists, and fishers’ acquisition of knowledge from biologists. Results illuminate the multidimensionality of these variables and suggest that complex interrelationships between them make the benefits of participatory research more nuanced than those reported for participatory decision-making. For instance, participatory research may provide low benefits when participatory research outcomes differ little from those produced solely by scientists. In addition, high-cost scenarios may result when outcomes of participatory research are inferior to those produced solely by scientists. A third downside may result when participation leads participants to increase their deference to scientific knowledge, thereby defeating the corroborative purpose of their participation. A fourth effect may occur when increased trust by in scientists results from participation, decreasing participants’ perceived need to take part in research.     

Midlittoral polychaete communities in the Eastern Mediterranean Sea: new information from the implementation of the Natural Geography in Shore Areas (NaGISA) protocol and comparisons at local and regional scales

The aim of this study was to attempt to fill current knowledge gaps on midlittoral Mediterranean biodiversity at local and regional scales, by using benthic polychaetes as a model taxon. Two different data sets were analysed: (i) a quantitative data set from the two Natural Geography in Shore Areas (NaGISA) study sites in Crete and (ii) a qualitative data set from multiple sites across the Mediterranean. At the local scale, the results provide evidence that (i) discrete species communities are formed in midlittoral Mediterranean habitats, which vary by geographical location and year, depending on the scale of observation; (ii) macrophyte coverage and Chl‐a are the only environmental variables associated, albeit weakly, with the above pattern; (iii) although naturally disturbed, the Cretan NaGISA sites do not seem to experience any anthropogenic stress; (iv) environmental heterogeneity and history seem to be much less important in shaping the polychaete communities than inter‐specific interactions; however, it is not possible to specify at this stage whether local or regional processes or even their interactions may shape the polychaete communities. At the regional scale, the results indicate that (i) the only factor that seems to be involved in the regional pattern is the identity of the study providing the data sets, which implies variability and bias in how research projects are carried out, from the sampling design through to data collection and analysis; (ii) the Cretan NaGISA sites may be considered as representative of the habitat in the Mediterranean, under certain conditions.     

More than just access to fish: The pros and cons of fisher participation in a customary marine tenure (Padu) system under pressure

The Padu system of South Asia has received growing attention as an example of customary marine tenure that has survived despite rapid development and change throughout the region’s fisheries. This paper describes the Padu system as it functions at Pulicat lagoon, India, where it has enjoyed decades of legitimacy amongst its members, and has contributed to sustainable fishing. Recently, however, the Padu system has become unstable, driven by pressures of an expanding fishing population, reduced access to fishing grounds and a growing ‘shared poverty’. In spite of this, fisher loyalty to uphold the Padu system remains strong. This raises questions about the broader social, political and cultural meanings of Padu, which extend beyond access to a lucrative fishery. The paper highlights a trade-off between the benefits received through Padu membership at a societal level through collective action, and the individual costs of partaking in ‘shared poverty’, which is inherently distributed unequally amongst fishing families. The paper concludes with a discussion on the future of the Padu system in Pulicat, drawing from evolutionary pathways of other Padu systems in the region. It is suggested that, in the Pulicat case, the high social values attributed to the Padu system, alongside complex power structures, may hinder institutional adaptation.     

Monitoring Large-Scale Tests for Nuclear Waste Disposal

Two large-scale “in situ” demonstration experiments and their instrumentation are described. The first test (FEBEX Experiment) involves the hydration of a compacted bentonite barrier under the combined effect of an inner source of heat and an outer water flow from the confining saturated granite rock. In the second case, the progressive de-saturation of Opalinus clay induced by maintained ventilation of an unlined tunnel is analyzed. The paper shows the performance of different sensors (capacitive cells, psychrometers, TDR’s) and a comparison of fill behaviour with modelling results. The long term performance of some instruments could also be evaluated specially in the case of FEBEX test. Capacitive sensors provide relative humidity data during long transient periods characterised by very large variations of suction within the bentonite.     

Molluskan species richness and endemism on New Caledonian seamounts: Are they enhanced compared to adjacent slopes?

Seamounts were often considered as ‘hotspots of diversity’ and ‘centers of endemism’, but recently this opinion has been challenged. After 25 years of exploration and the work of numerous taxonomists, the Norfolk Ridge (Southwest Pacific) is probably one of the best-studied seamount chains worldwide. However, even in this intensively explored area, the richness and the geographic patterns of diversity are still poorly characterized. Among the benthic organisms, the post-mortem remains of mollusks can supplement live records to comprehensively document geographical distributions. Moreover, the accretionary growth of mollusk shells informs us about the life span of the pelagic larva. To compare diversity and level of endemism between the Norfolk Ridge seamounts and the continental slopes of New Caledonia we used species occurrence data drawn from (i) the taxonomic literature on mollusks and (ii) a raw dataset of mainly undescribed deep-sea species of the hyperdiverse Turridae. Patterns of endemism and species richness were analyzed through quantitative indices of endemism and species richness estimator metrics. To date, 403 gastropods and bivalves species have been recorded on the Norfolk Ridge seamounts. Of these, at least 38 species (∼10%) are potentially endemic to the seamounts and nearly all of 38 species have protoconchs indicating lecithotrophic larval development. Overall, our results suggest that estimates of species richness and endemism, when sampling effort is taken into account, were not significantly different between slopes and seamounts. By including in our analyses 347 undescribed morphospecies from the Norfolk Ridge, our results also demonstrate the influence of taxonomic bias on our estimates of species richness and endemism.