Feature modeling approach to simulating Loop Current Frontal Eddies

Loop Current Frontal Eddies (LCFE) in the Gulf of Mexico are simulated with a regional configuration of the Princeton Ocean Model using a feature-oriented initialization technique. The initialization procedure is based on a prior investigation of stability characteristics of the Loop Current (LC). Zonal channel experiments conducted with a multi-layer intermediate equations model allowed to identify conditions necessary for formation and growth of frontal eddies. The simulations were able to reproduce key features of LCFE-topography interaction in the DeSoto Canyon region observed during the “Eddy Intrusion” study.     

The anatomy of a disaster, an overview of Hurricane Katrina and New Orleans

Hurricane Katrina created the one of the worst natural disaster in the history of the United States, resulting in over 1600 fatalities and $30B in direct economic losses in southern Louisiana. The Louisiana and Mississippi coastlines experienced the highest surge level recorded in North America and Katrina-generated waves in the Gulf of Mexico that equaled the highest previously measured by NOAA buoys. What happened in New Orleans epitomizes the risk of living below sea level in a coastal city, depending on structures that were the result of considerable compromise and piecemeal funding and construction. The Interagency Performance Evaluation Task Force was established to examine the performance of the New Orleans and southeast Louisiana hurricane protection system and provide real-time input to the repairs and rebuilding of the system. In addition to this atypical just-in-time forensic analysis, the task force examined the risk of living in New Orleans prior to and following the repairs to the hurricane protection system. Much of the forensic analysis depended on modeling and simulation of hurricane surge and waves. With virtually all measurement instruments swept away by Katrina, only models and high-water marks were available to recreate the conditions that the structures experienced during the storm. Because of the complexities of the region and the processes involved, simulation of hurricane surge and waves required many fresh ideas and new approaches and these topics, along with new concepts for future planning and design, are the focus of this special issue. Yet, the need to influence the repair and rebuilding of the damaged structures prior to the next hurricane season (roughly 9 months) dictated using existing computational tools that were ready to go. The same modeling and simulation approach was put to work to define the surge and wave hazard New Orleans faces for the future. To put this important body of work in context, this paper provides a broad overview of the entire scope of work of the task force and summarizes its principal findings.     

Importance of wave-induced bed liquefaction in the fine sediment budget of Cleveland Bay,Great Barrier Reef

Data from a three-year long field study of fine sediment dynamics in Cleveland Bay show that wave-induced liquefaction of the fine sediment bed on the seafloor in shallow water was the main process causing bed erosion under small waves during tradewinds, and that shear-induced erosion prevailed during cyclonic conditions. These data were used to verify a model of fine sediment dynamics that calculates sediment resuspension by both excess shear stress and wave-induced liquefaction of the bed. For present land-use conditions, the amount of riverine sediments settling on the bay may exceed by 50–75% the amount of sediment exported from the bay. Sediment is thus accumulating in the bay on an annual basis, which in turn may degrade the fringing coral reefs. For those years when a tropical cyclone impacted the bay there may be a net sediment outflow from the bay. During the dry, tradewind season, fine sediment was progressively winnowed out of the shallow, reefal waters.     

Evidence for discrete subpopulations of sea perch (Helicolenus ercoides) across four fjords in Fiordland,New Zealand

In coastal populations of invertebrates and fishes, the distribution of discrete subpopulations is influenced by adult and larval dispersal, as well as by the effects of habitat heterogeneity on site fidelity or connectivity. Here, we examine evidence for spatial structure of sea perch, Helicolenus percoides, populations among four fjords in the Fiordland region of southwestern New Zealand. We examine patterns in adult morphology, length-at-age, δ¹³C and δ¹⁵N of muscle tissue, and trace elemental composition of whole otoliths as proxies for population isolation among the four inner fjord regions. A multivariate analysis of morphometrics reveals significant differences among populations from each of the four sites, suggesting existence of four distinct subpopulations. These patterns are consistent with observed differences in δ¹³C and δ¹⁵N, and length-at-age estimates among the four subpopulations. Differences in whole otolith concentrations of Sr, Ba, Mg and Li, and high classification scores based on the whole otolith elemental fingerprint are also consistent with significant subdivision among areas. Patterns across all four markers are consistent with discrete subpopulation structure of adult sea perch among the four study sites. These data indicate that the newly implemented network of marine protected areas in Fiordland is likely to contain discrete populations of sea perch.     

Lobster trap impact on coral reefs: Effects of wind‐driven trap movement

Commercial fishers report finding their lobster traps often great distances from their original location following major hurricanes. But traps also move during lesser wind events, such as during winter cold fronts. To assess trap impact on coral communities following winter storms, lobster traps were placed in hardbottom and reef habitats commonly used by commercial fishers in the Florida Keys, United States. Trap movement, percentage benthic faunal cover, and benthic faunal damage were assessed after 26 wind events occuring over three winters. Traps moved when storms with sustained winds greater than 15 knots (27.8 km/h) persisted for more than 2 days. Winter storms above this threshold moved buoyed traps a mean (±SE) distance of 3.63 ± 0.62 m, 3.21 ± 0.36 m, and 0.73 ± 0.15 m per trap and affected a mean area of 4.66 ± 0.76 m², 2.88 ± 0.29 m², and 1.06 ± 0.17 m², per trap at 4‐m, 8‐m, and 12‐m depths, respectively. Unbuoyed traps, simulating derelict traps, moved a mean distance of 0.43 ± 0.08 m and 0.44 ± 0.02 m, and affected a mean area of 0.77 ± 0.06 m² and 0.90 ± 0.08 m² per trap at 4‐m and 8‐m depths, respectively. Injuries caused by trap movement included scraped, fragmented, and dislodged sessile fauna, resulting in significant damage to stony coral, octocoral, and sponges. Overall, sessile fauna cover along the trap movement path was reduced from 45% to 31%, 51% to 41%, and 41% to 35% at the 4‐m, 8‐m, and 12‐m sites, respectively. Because of the large numbers of traps deployed and reported lost each season, damage to sessile fauna and loss of benthic faunal cover caused by traps needs to be considered to effectively protect coral reefs and manage essential fishery habitat in the future.     

Predicting suitability of cockle Austrovenus stutchburyi restoration sites using hydrodynamic models of larval dispersal

An important aspect of shellfish restoration projects is to evaluate whether potential sites are likely to be recolonised naturally once disturbances are removed and habitats are restored. Similarly, if active translocation or reseeding of juveniles or adults is undertaken, it is important to understand whether these introduced populations will be self‐maintaining in future, and whether any seed they produce are likely to be retained within the restored area. We used a combined hydrodynamic and particle tracking model to predict larval dispersion patterns for the common cockle Austrovenus stutchburyi under different hydrodynamic scenarios for seven release locations in Whangarei Harbour, New Zealand. Our results implied that sites varied substantially in their potential for self‐seeding and for exporting seed to other locations. For sites with more restricted dispersal, the model predicted that most larvae originating at these sites would settle inside the release region (68–94% for passive particle simulations), whereas relatively few larvae originating from the other release sites settled at these sites. In contrast, model larvae released from sites exhibiting high connectivity dispersed to all sub‐regions in the harbour, and export outside of the model region was high. Forthcoming field validation of these model predictions will result in better integration of hydrodynamic connectivity in whole estuary restoration programs.     

Non-Energy Resources,Connecticut Coastal Waters,Year 9 and 10 Activities

The Connecticut effort in year 9 of the Continental Margins Program concentrated on a 13.6-mi2 area south of the Housatonic River. This area was chosen for a side-scan sonar survey because it lies on and adjacent to the bathymetric expressions of two fairly large, subcropping, potential sources of coarse material. Previous seismic work in the area indicated that outcrops or subcrops of these potential source deposits could be delineated using their bathymetric expression. Owing to the limited resolution of the seismic data, a correlation between bottom type and underlying source deposits could not be made with the seismics alone. Results from the November 1993 side-scan survey show that although the source deposits have discernible bathymetric expressions, they are not cropping out as much as expected. As a result, bottom type is not necessarily determined by subcropping deposits in this particular area. Year 10 work was concentrated in Fishers Island Sound, where three areas of potential interest for near-shore gravel resources had previously been identified. These areas were surveyed, during the spring of 1996, using the RoxAnn Seabed Classification System. A small video camera and a Van Veen grab sampler were used to calibrate and verify the RoxAnn data. Although previous sampling had indicated the presence of gravel or gravelly sediment in all of the survey areas, the RoxAnn results showed less gravel than anticipated. Vibrant eelgrass beds and other habitat indicators were detected in all of the survey areas. Given the variable sediment results, and the high habitat potential of the areas surveyed, the likelihood of developing a sand and gravel supply from the near shore of Fishers Island Sound appears quite low.     

The expression of CYP1A,vitellogenin and zona radiata proteins in Atlantic salmon (Salmo salar) after oral dosing with two commercial PBDE flame retardant mixtures: absence of short-term responses

The short-term effects of the commercial PBDE flame retardant mixtures Penta-BDE and cta-BDE on the expression of cytochrome P450 1A (CYP1A), vitellogenin (Vtg) and zona radiata proteins (Zrp) were investigated in juvenile salmon (Salmo salar). For this purpose, groups of fish were dosed twice (oral intake at days I and 4) with 10 and 50 mg/kg body weight of both commercial mixtures. The fishes were sacrificed at day 7 (n = 5 for each group) and 14 (n = 6 for each group), and blood, liver, fillet, and brain were collected. Blanks and positive controls were also part of the experiment. The expressions of Vtg, Zrp, and CYPIA were measured with several techniques (EROD, ELISA, Western, Northern and Slot Blot). The values in the groups of fish treated with Penta-BDE or Octa-BDE did not significantly differ from the reference group for any of the parameters tested. In contrast, the positive control groups treated with estradiol-17beta for Vtg and Zrp expression, and beta-naphthoflavone for CYP1A expression did show a significant response, indicating the potential sensitivity of the fishes for the parameters measured. Since the results of the chemical analyses showed concentrations of a number of PBDE congeners in liver, fillet, and brain that were about three orders of magnitude above those of fish from the North Sea, it is concluded that the short-term toxicity of both commercial PBDE mixtures for these endpoints was low.     

Submersible observations of an iceberg pit and scour on the Grand Banks of Newfoundland

An elongated sea bed depression (pit), 80 by 125 m and 10 m deep located on the Grand Banks of Newfoundland was identified on high resolution surficial geophysical survey lines and investigated using a manned submersible. The pit occurs at the termination of a long (greater than 3 km) iceberg scour, 1.5 m deep, and 80 m wide in 91 m of water. It is similar to other depressions in the region that indent the sea bed up to seven times deeper than the surrounding deepest iceberg furrows. The pit is interpreted to be the sea bed response to impact and loading by a rolling and grounding iceberg. The iceberg scour and pit appear to be of recent origin.