The ecology and phylogeny of cyanobacterial symbionts in sponges

Cyanobacteria have flexible photosynthetic apparatus that allows them to utilise light at very low levels, making them ideal symbionts for a wide range of organisms. Sponge associations with cyanobacteria are common in all areas of the world, but little is known about them. Recent research has revealed new cyanobacterial symbionts that may be host specific and two major clades, ' Candidatus Synechococcus spongiarum ' and Oscillatoria spongeliae , that occur in widely separated geographic locations in unrelated sponge hosts. These clades may represent a cluster of closely related symbiont species, or may be single species that are maintained by periods of horizontal transmission over large distances. Erroneous assumptions regarding the importance of cyanobacterial symbionts to the survival of individual sponges or species may arise from cyanosponges being deemed to be phototrophic or mixotrophic without studies of their photophysiology. This review brings together recent and past research on cyanobacterial associations with sponges, including their biogeography, phylogeny, host specificity, and ecology.     

Molluscan assemblages of seagrass-covered and bare intertidal flats on the Banc d'Arguin, Mauritania, in relation to characteristics of sediment and organic matter

The Banc d'Arguin, a non-estuarine area of shallows and intertidal flats off the tropical Saharan coast of Mauritania, is characterised by extensive intertidal and subtidal seagrass beds. We examined the characteristics of intertidal seagrass (Zostera noltii) meadows and bare areas in terms of the presence and abundance of molluscs (gastropods and bivalves). To explain observed differences between molluscan assemblages in seagrass and bare patches, some aspects of the feeding habitat (top-5 mm of the sediment) and of food (organic materials) of molluscs were examined. The novelty of this study is that phytopigments were measured and identified to assess source and level of decay (freshness) of organic material in the sediment and to study their importance as an explanatory variable for the distribution of molluscs. Over an area of 36 km² of intertidal flats, at 12 sites, paired comparisons were made between seagrass-covered and nearby bare patches. Within seagrass meadows, dry mass of living seagrass was large and amounted to 180 ±10 g AFDM m^− 2 (range 75–240). Containing twice the amount of silt per unit dry sediment mass, seagrass sediments were muddier than bare areas; the relative amount of organic material was also larger. The total number of species of bivalves and gastropods amounted to 27, 14 of which were found only in seagrass areas, 4 only in bare and 9 in both types of habitat. Among the three numerically most abundant species, the bivalves Anadara senilis, Dosinia hepatica and Loripes lacteus, the first was numerically most abundant in bare and the other two in seagrass-covered areas. Bare intertidal areas had greater mean total biomass of molluscs (80.5 g AFDM m^− 2) than seagrass meadows (30.0 g AFDM m^− 2). In both habitats, the bulk of the biomass was made up by A. senilis. Excluding this species, bare mudflats contained on average only 3.1 g AFDM m^− 2 and seagrass meadows 6.9 g AFDM m^− 2. As compared to previous surveys in 1980–1986, the biomass of A. senilis had increased almost 10-fold and D. hepatica, previously found in very small numbers, had become the most numerous species. However, the total biomass excluding that of A. senilis was similar. Concentrations of phytopigments were similar to those observed at temperate mudflats, indicating that the Banc d'Arguin might not be as oligotrophic as previously thought. Per unit of dry sediment mass, smaller amounts of phytopigments were found in bare than in seagrass areas. Per unit of dry organic material, bare sediments contained most (fresh) phytopigments. This suggests that in seagrass-covered meadows the organic material is more degraded than in bare sediments. Overall, the composition of phytopigments, quite surprisingly, indicated a benthic-diatom-dominated trophic system. Multivariate statistics revealed that patterns of zoobenthic assemblages were correlated with patterns of a combination of four environmental parameters: grain size of the sediment, amount of fresh phytopigments and amounts of leaves and roots of seagrass.     

Microbial photosynthesis in coral reef sediments (Heron Reef, Australia)

We investigated microphytobenthic photosynthesis at four stations in the coral reef sediments at Heron Reef, Australia. The microphytobenthos was dominated by diatoms, dinoflagellates and cyanobacteria, as indicated by biomarker pigment analysis. Conspicuous algae firmly attached to the sand grains (ca. 100 μm in diameter, surrounded by a hard transparent wall) were rich in peridinin, a marker pigment for dinoflagellates, but also showed a high diversity based on cyanobacterial 16S rDNA gene sequence analysis. Specimens of these algae that were buried below the photic zone exhibited an unexpected stimulation of respiration by light, resulting in an increase of local oxygen concentrations upon darkening. Net photosynthesis of the sediments varied between 1.9 and 8.5 mmol O₂ m⁻² h⁻¹ and was strongly correlated with Chl a content, which lay between 31 and 84 mg m⁻². An estimate based on our spatially limited dataset indicates that the microphytobenthic production for the entire reef is in the order of magnitude of the production estimated for corals. Photosynthesis stimulated calcification at all investigated sites (0.2–1.0 mmol Ca²⁺ m⁻² h⁻¹). The sediments of at least three stations were net calcifying. Sedimentary N₂-fixation rates (measured by acetylene reduction assays at two sites) ranged between 0.9 to 3.9 mmol N₂ m⁻² h⁻¹ and were highest in the light, indicating the importance of heterocystous cyanobacteria. In coral fingers no N₂-fixation was measurable, which stresses the importance of the sediment compartment for reef nitrogen cycling.     

Structure and photosynthetic properties of phytoplankton assemblages in a highly dynamic system, the Northern Adriatic Sea

The photosynthetic properties of phytoplankton populations as related to physical–chemical variations on small temporal and spatial scales and to phytoplankton size structure and pigment spectra were investigated in the Northern Adriatic Sea off the Po River delta in late winter 1997. Large diatoms (fucoxanthin) dominated the phytoplankton in the coastal area whereas small phytoflagellates (mainly 19′-hexanoyloxyfucoxanthin, chlorophyll b, 19′-butanoyloxyfucoxanthin) occurred outside the front. The front was defined by the steep gradient in density in the surface layer separating low-salinity coastal waters from the offshore waters.Physical features of the area strongly influenced phytoplankton biomass distributions, composition and size structure. After high volumes of Po River discharge several gyres and meanders occurred in the area off the river delta in February. Decreasing river discharge and the subsequent disappearance of the gyres and the spreading dilution of the river plume was observed in March. The dynamic circulation of February resulted in high photosynthetic capacity of the abundant phytoplankton population (>3.40 mg m⁻³). In March, the slow circulation and an upper low-salinity water layer, segregated from the deeper layers, resulted in lack of renewal of this water mass. The huge phytoplankton biomass, up to 15.77 mg chl a m⁻³, became nutrient depleted and showed low photosynthetic capacity. In February, an exceptionally high P_max^B, 20.11 mg C (mg chl a)⁻¹ h⁻¹ was recorded in the Po River plume area and average P_max^B was three-fold in February as compared to the March recordings, 10.50 mg C (mg chl a)⁻¹ h⁻¹ and 3.22 mg C (mg chl a)⁻¹ h⁻¹, respectively.The extreme variability and values of phytoplankton biomass in the innermost plume area was not always reflected in primary production. Modeling of circulation patterns and water mass resilience in the area will help to predict phytoplankton response and biomass distributions. In the frontal area, despite a considerable variability in environmental conditions, our findings have shown that the phytoplankton assemblages will compensate for nutrient depression and hydrographic constraints, by means of size and taxonomic composition and, as a result, the variability in the photosynthetic capacity was much less pronounced than that observed for other parameters.     

Environmental limitations on recruitment from seed in invasive Spartina densiflora on a southern European salt marsh

The South American cordgrass, Spartina densiflora, has invaded a range of different habitats that can support different native species assemblages on salt marshes in the Gulf of Cadiz, Spain. Little is known about the mechanisms of invasion. We examined the potential for seed germination and recruitment in a field transplant experiment, representing a wide range of environments, on elevational gradients across marshes with muddy and sandy sediments. The biotic resistance of native, perennial vegetation (where present) to recruitment of the alien was also investigated. Spartina densiflora seeds were able to germinate over a greater than 2-m range of elevation in the tidal frame. Germination success on unvegetated muddy sediments was related to sediment redox potential, with poor germination at strongly negative redox potentials on the lower sites. On sandy, well-drained sediments, germination was apparently constrained by water availability at the highest elevations. Comparison of vegetated and cleared plots on the upper marsh showed that there was a negative relationship between the presence of Atriplex portulacoides and germination on the muddy sediments. Recruitment (survival of seedlings for 12 weeks) was seen only on unvegetated muddy sediments at the highest elevation. Hence the invasive success and wide elevational tolerance of S. densiflora on the marshes of the Gulf of Cadiz are not reflected in its short-term ability to become established from its prolific seed production. Colonization of sub-optimal habitats may be largely by vegetative propagules and clonal growth.     

Polar stratospheric clouds from satellite observational data

The spectral aerosol-extinction coefficients (SAECs) obtained from SAGE III measurements are used to study the physical and integral microphysical characteristics of polar stratospheric clouds (PSCs). Different criteria for PSC identification from SAEC measurements are considered and analyzed based on model and field measurements. An intercomparison of them is performed, and the agreement and difference of the results obtained with the use of different criteria are shown. A new criterion is proposed for PSC identification, which is based on the estimate of how close the measured vector of the spectral attenuation coefficient is to a model distribution of the PSC ensemble. On the basis of different criteria, cases of PSCs are isolated from all SAGE III observations (over 30000). All selection criteria lead to a qualitatively and quantitatively similar space-time distribution of the regions of PSC localization. The PSCs observed in the region accessible to SAGE III measurements are localized in the latitudinal zones 65°–80° in the Northern Hemisphere and 45°–60° in the Southern Hemisphere during the winter-spring period. In the Northern Hemisphere, PSCs are observed within the longitudinal zone 120° W–100° E with the maximum frequency of PSC observation in the vicinity of the Greenwich meridian. In the Southern Hemisphere, the region of PSC observation is almost the same in longitude but with a certain shift in the maximum frequency of PSC observation to the west. This maximum is observed in the vicinity of 40°W, and the region of usual PSC observation is the neighborhood of 60° of the maximum’s longitude. The physical parameters of PSCs are estimated: the mean heights of the lower and upper boundaries of PSCs are 19.5 and 21.9 km, respectively, and the mean cloud temperature is 191.8 K. The integral microphysical parameters of PSCs are estimated: the total surface of NAT particles S _NAT = 0.41 μm²/cm³; the total volume of NAT particles V _NAT = 1.1 μm³/cm³; and, for all aerosol and cloud particles together, S is 2.9 ± 1.5 at a standard deviation of 2.7 μm²/cm³ and V is 2.8 ± 1.5 at a standard deviation of 4.2 μm³/cm³. A high frequency of PSC occurrence and high values of S and V in PSCs both for all particles and for NAT particles have been noted in January–February 2005 as compared to the rest of the period of SAGE III measurements for 2002–2005.     

A probabilistic methodology to estimate future coastal flood risk due to sea level rise

In this paper we present a methodology to estimate the probability of future coastal flooding given uncertainty over possible sea level rise. We take as an example the range of sea level rise magnitudes for 2100 contained in the IPCC Third Assessment Report [Church, J.A., Gregory, J.M., Huybrechts, P., Kuhn, M., Lambeck, K., Nhuan, M.T., Qin, D., Woodworth, P.L., Anisimov, O.A., Bryan, F.O., Cazenave, A., Dixon, K.W., Fitzharris, B.B., Flato, G.M., Ganopolski, A., Gornitz, V., Lowe, J.A., Noda, A., Oberhuber, J.M., O'Farrell, S.P., Ohmura, A., Oppenheimer, M., Peltier, W.R., Raper, S.C.B., Ritz, C., Russell, G.L., Schlosser, E., Shum, C.K., Stocker, T.F., Stouffer, R.J., van de Wal, R.S.W., Voss, R., Wiebe, E.C., Wild, M., Wingham, D.J. and Zwally, H.J., 2001. Changes in sea level. In Houghton, J.T. et al. (eds), Climate Change 2001: The Scientific Basis. Contribution of Working Group I to the Third Assessment Report of the Intergovernmental Panel on Climate Change. Cambridge University Press, Cambridge, United Kingdom, 881pp.] and infer a plausible probability distribution for this range. We then use a Monte Carlo procedure to sample from this distribution and use the resulting values as an additional boundary forcing for a two-dimensional model of coastal inundation used to simulate a 1 in 200 year extreme water level event. This yields an ensemble of simulations for an event of this magnitude occurring in 2100, where each member represents a different possible scenario of sea level rise by this time. We then develop a methodology to approximate the probability of flooding in each model grid cell over the ensemble and by combining these hazards maps with maps of land use values (consequence) we are able to estimate spatial contributions to flood risk that can aid planning and investment decisions. The method is then applied to a 32 km section of the UK coast in Somerset, South-West England and used to estimate the monetary losses and risk due a 1 in 200 year recurrence interval event under: (a) current conditions; (b) with the IPCC's most plausible value for sea level rise by 2100 (0.48 m) and (c) using the above methodology to fully account for uncertainty over possible sea level rise. The analysis shows that undertaking a risk assessment using the most plausible sea level rise value may significantly underestimate monetary losses as it fails to account for the impact of low probability, high consequence events. The developed method provides an objective basis for decisions regarding future defence spending and can be easily extended to consider other sources of uncertainty such as changing event frequency–magnitude distribution, changing storm surge conditions or model structural uncertainty, either singly or in combination as joint probabilities.     

Large-scale dune erosion tests to study the influence of wave periods

Large-scale physical model tests were performed to quantify the effects of the wave period on dune erosion. Attention was focussed on 2D cross-shore effects in a situation with sandy dunes and extreme water levels and wave conditions. Besides profile measurements, detailed measurements in time and space of water pressure, flow velocities and sediment concentrations were performed in the near near-shore area. It was concluded that a longer wave period leads to a larger dune erosion volume and to a larger landward retreat of the dune face. Tests with double-peaked wave spectra showed that the influence of the spectral shape on dune erosion was best represented by the T_m − 1,0 spectral mean wave period, better than the peak wave period, T_p. The effect of the wave period on dune erosion was implemented in a dune erosion prediction method that estimates erosion volumes during normative storm conditions for the Dutch coast. More details of the measurements and additional analyses of physical processes are described in an accompanying paper by Van Thiel de Vries et al. [Van Thiel de Vries, J.S.M., van Gent, M.R.A., Reniers, A.J.H.M. and Walstra, D.J.R., submitted for publication. Analysis of dune erosion processes in large scale flume experiments, In this volume of Coastal Engineering.].